Wall clock time and date at job start Tue Mar 31 2020 18:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42906 * 113.99704 * 2 1 4 4 C 1.52994 * 109.47123 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47452 * 64.99642 * 4 3 2 6 6 C 1.46504 * 120.00325 * 270.00695 * 5 4 3 7 7 C 1.53000 * 109.46669 * 269.99405 * 6 5 4 8 8 N 1.46895 * 109.47079 * 179.97438 * 7 6 5 9 9 C 1.46898 * 111.00258 * 170.00035 * 8 7 6 10 10 C 1.46909 * 111.00197 * 293.95773 * 8 7 6 11 11 C 1.34781 * 119.99879 * 89.99500 * 5 4 3 12 12 O 1.21575 * 119.99880 * 179.97438 * 11 5 4 13 13 N 1.34778 * 119.99629 * 0.02562 * 11 5 4 14 14 C 1.39243 * 119.99652 * 185.17484 * 13 11 5 15 15 C 1.39480 * 119.83679 * 324.05004 * 14 13 11 16 16 C 1.36367 * 120.17286 * 180.25661 * 15 14 13 17 17 C 1.40874 * 119.82413 * 359.49018 * 16 15 14 18 18 C 1.41158 * 120.16239 * 180.23301 * 17 16 15 19 19 H 1.08007 * 120.00058 * 205.01442 * 18 17 16 20 20 C 1.39893 * 120.00193 * 25.00950 * 18 17 16 21 21 N 1.30881 * 119.99832 * 17.70316 * 20 18 17 22 22 Si 1.86802 * 120.00251 * 197.69568 * 20 18 17 23 23 H 1.48497 * 109.47079 * 94.98398 * 22 20 18 24 24 H 1.48497 * 109.47288 * 214.98638 * 22 20 18 25 25 H 1.48504 * 109.46869 * 334.98670 * 22 20 18 26 26 C 1.40868 * 119.67492 * 0.53062 * 17 16 15 27 27 C 1.36376 * 119.82424 * 359.72225 * 26 17 16 28 28 H 1.08995 * 109.46917 * 60.00318 * 1 2 3 29 29 H 1.09006 * 109.46470 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47101 * 299.99771 * 1 2 3 31 31 H 1.08994 * 109.47050 * 59.99894 * 3 2 1 32 32 H 1.09004 * 109.46697 * 300.00124 * 3 2 1 33 33 H 1.09003 * 109.47119 * 305.00075 * 4 3 2 34 34 H 1.08994 * 109.47605 * 185.00011 * 4 3 2 35 35 H 1.08999 * 109.47096 * 29.99091 * 6 5 4 36 36 H 1.09000 * 109.47242 * 149.99682 * 6 5 4 37 37 H 1.08996 * 109.47199 * 300.00210 * 7 6 5 38 38 H 1.09000 * 109.47063 * 60.00167 * 7 6 5 39 39 H 1.09003 * 109.46982 * 60.00463 * 9 8 7 40 40 H 1.09009 * 109.47071 * 180.02562 * 9 8 7 41 41 H 1.08996 * 109.47233 * 300.00261 * 9 8 7 42 42 H 1.09000 * 109.46907 * 59.99901 * 10 8 7 43 43 H 1.08996 * 109.46825 * 179.97438 * 10 8 7 44 44 H 1.09001 * 109.46537 * 299.99590 * 10 8 7 45 45 H 0.96995 * 120.00403 * 5.17525 * 13 11 5 46 46 H 1.08005 * 119.91336 * 359.97063 * 15 14 13 47 47 H 1.08001 * 120.09186 * 179.74557 * 16 15 14 48 48 H 0.96998 * 120.00158 * 179.97438 * 21 20 18 49 49 H 1.07998 * 120.09039 * 179.70685 * 26 17 16 50 50 H 1.08003 * 119.91158 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1053 -0.8920 -1.3427 7 6 5.5224 -1.3038 -0.9388 8 7 5.6521 -2.7643 -1.0285 9 6 7.0537 -3.1784 -0.8799 10 6 4.7982 -3.4307 -0.0361 11 6 4.2614 1.3339 -2.3218 12 8 4.6273 0.8191 -3.3607 13 7 4.1425 2.6738 -2.2389 14 6 4.3328 3.4610 -3.3715 15 6 5.2965 3.1006 -4.3133 16 6 5.4922 3.8694 -5.4224 17 6 4.7105 5.0245 -5.6211 18 6 4.9037 5.8228 -6.7691 19 1 4.6347 6.8687 -6.7511 20 6 5.4435 5.2593 -7.9302 21 7 5.4488 3.9598 -8.0855 22 14 6.1566 6.3617 -9.2590 23 1 7.6232 6.4876 -9.0633 24 1 5.8843 5.7687 -10.5930 25 1 5.5291 7.7051 -9.1770 26 6 3.7395 5.3823 -4.6654 27 6 3.5589 4.6063 -3.5586 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8515 0.5684 0.8409 34 1 3.9785 2.1766 0.0889 35 1 3.3854 -1.3629 -0.6733 36 1 3.9121 -1.2113 -2.3668 37 1 6.2423 -0.8329 -1.6082 38 1 5.7155 -0.9845 0.0853 39 1 7.4276 -2.8533 0.0910 40 1 7.1212 -4.2641 -0.9508 41 1 7.6522 -2.7252 -1.6701 42 1 3.7571 -3.1608 -0.2129 43 1 4.9133 -4.5109 -0.1247 44 1 5.0905 -3.1147 0.9653 45 1 3.9245 3.0898 -1.3902 46 1 5.8925 2.2128 -4.1613 47 1 6.2415 3.5914 -6.1487 48 1 5.8228 3.5690 -8.8907 49 1 3.1398 6.2690 -4.8086 50 1 2.8151 4.8796 -2.8247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104985821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:08 Heat of formation + Delta-G solvation = -52.664066 kcal Electronic energy + Delta-G solvation = -29422.042276 eV Core-core repulsion = 25449.137951 eV Total energy + Delta-G solvation = -3972.904325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.66433 -39.56105 -38.72415 -38.45975 -36.43951 -36.19901 -34.68204 -31.78861 -31.39099 -30.85233 -29.52099 -28.46360 -27.15996 -26.84539 -25.10991 -24.14195 -23.17199 -22.76367 -21.98290 -20.57258 -19.37735 -19.18395 -18.20969 -17.37161 -17.22363 -17.05491 -16.48726 -16.44729 -16.36699 -15.85268 -15.80019 -15.63634 -15.39659 -14.87662 -14.76180 -14.50645 -14.20856 -13.92415 -13.72586 -13.62128 -13.36836 -13.25491 -13.18954 -12.92608 -12.79358 -12.78965 -12.64565 -12.60341 -12.49973 -12.28816 -12.12168 -11.79518 -11.71050 -11.69490 -11.24467 -10.94514 -10.59656 -10.46597 -9.75766 -9.41616 -9.30397 -8.81520 -8.58252 -6.23883 0.89343 1.17650 1.38488 1.48552 1.53464 1.65248 2.18464 2.22671 2.77816 2.84602 2.94679 3.19729 3.77133 3.91430 4.00871 4.14708 4.16538 4.25740 4.32529 4.43024 4.45686 4.48173 4.52557 4.52792 4.56172 4.59102 4.66320 4.70548 4.83005 4.85784 4.88702 4.96621 4.98112 5.02735 5.11427 5.12627 5.20661 5.32405 5.45668 5.56738 5.68654 5.79787 6.02675 6.06888 6.11340 6.13973 6.17454 6.25400 6.38479 6.72073 6.95628 7.05228 7.06206 7.68370 8.36268 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.002763 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.503112 B =10131.413232 C =11683.037698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.405 6.405 3 C 0.040 3.960 4 C 0.107 3.893 5 N -0.615 5.615 6 C 0.150 3.850 7 C 0.053 3.947 8 N -0.566 5.566 9 C 0.027 3.973 10 C 0.023 3.977 11 C 0.691 3.309 12 O -0.622 6.622 13 N -0.656 5.656 14 C 0.026 3.974 15 C -0.099 4.099 16 C -0.181 4.181 17 C 0.073 3.927 18 C -0.495 4.495 19 H 0.082 0.918 20 C 0.029 3.971 21 N -0.830 5.830 22 Si 0.985 3.015 23 H -0.264 1.264 24 H -0.271 1.271 25 H -0.252 1.252 26 C -0.222 4.222 27 C -0.098 4.098 28 H 0.031 0.969 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.036 0.964 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.049 0.951 39 H 0.034 0.966 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.035 0.965 45 H 0.411 0.589 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.286 0.714 49 H 0.111 0.889 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.996 -8.903 21.544 23.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.324 6.324 3 C -0.038 4.038 4 C -0.015 4.015 5 N -0.352 5.352 6 C 0.027 3.973 7 C -0.077 4.077 8 N -0.291 5.291 9 C -0.121 4.121 10 C -0.125 4.125 11 C 0.394 3.606 12 O -0.501 6.501 13 N -0.306 5.306 14 C -0.068 4.068 15 C -0.120 4.120 16 C -0.201 4.201 17 C 0.070 3.930 18 C -0.524 4.524 19 H 0.100 0.900 20 C -0.185 4.185 21 N -0.456 5.456 22 Si 0.806 3.194 23 H -0.189 1.189 24 H -0.196 1.196 25 H -0.176 1.176 26 C -0.242 4.242 27 C -0.119 4.119 28 H 0.050 0.950 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.055 0.945 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.054 0.946 45 H 0.249 0.751 46 H 0.110 0.890 47 H 0.111 0.889 48 H 0.096 0.904 49 H 0.129 0.871 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.760 -9.809 20.218 22.970 hybrid contribution 0.404 0.825 -0.038 0.919 sum -4.356 -8.984 20.180 22.515 Atomic orbital electron populations 1.22846 0.80028 1.03511 1.00358 1.87830 1.20881 1.28166 1.95545 1.23155 0.93935 0.85256 1.01463 1.21917 0.92751 1.00652 0.86220 1.47032 1.70345 1.06453 1.11327 1.21151 0.96206 0.77757 1.02221 1.22332 0.97771 0.88013 0.99565 1.61828 1.09433 1.06210 1.51594 1.22380 0.87652 1.01979 1.00055 1.22492 0.97648 0.99802 0.92519 1.16224 0.78803 0.81864 0.83746 1.90916 1.54680 1.73534 1.31002 1.41959 1.73852 1.03647 1.11153 1.17030 1.02033 0.96115 0.91623 1.20580 0.97687 0.98195 0.95515 1.20871 1.02562 0.98947 0.97705 1.17998 0.89962 0.92075 0.92942 1.19820 1.38573 0.97602 0.96427 0.89972 1.26870 0.93365 0.96458 1.01823 1.69964 1.34244 1.13563 1.27865 0.85152 0.79082 0.79033 0.76170 1.18896 1.19588 1.17558 1.20808 1.02231 1.03294 0.97913 1.20361 0.98268 0.95071 0.98158 0.95031 0.88811 0.92306 0.89060 0.94538 0.87049 0.87436 0.87798 0.93059 0.93570 0.93316 0.94792 0.89849 0.92618 0.90985 0.90328 0.94629 0.75051 0.88978 0.88887 0.90399 0.87071 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.66 16 2 O -0.40 -7.68 9.53 -148.98 -1.42 -9.10 16 3 C 0.04 0.64 6.28 71.98 0.45 1.09 16 4 C 0.11 1.76 5.62 86.38 0.49 2.25 16 5 N -0.62 -16.63 2.44 -839.85 -2.05 -18.67 16 6 C 0.15 4.03 5.15 86.38 0.44 4.48 16 7 C 0.05 1.31 5.28 86.30 0.46 1.77 16 8 N -0.57 -12.79 5.02 -948.84 -4.76 -17.55 16 9 C 0.03 0.52 9.57 127.69 1.22 1.74 16 10 C 0.02 0.37 9.32 127.69 1.19 1.57 16 11 C 0.69 26.09 8.11 179.05 1.45 27.55 16 12 O -0.62 -30.78 13.35 -3.95 -0.05 -30.83 16 13 N -0.66 -22.95 5.18 -316.78 -1.64 -24.59 16 14 C 0.03 1.17 6.30 38.56 0.24 1.41 16 15 C -0.10 -5.31 8.61 22.13 0.19 -5.12 16 16 C -0.18 -10.45 8.64 22.48 0.19 -10.26 16 17 C 0.07 4.09 5.57 -21.27 -0.12 3.97 16 18 C -0.49 -27.44 9.03 23.39 0.21 -27.23 16 19 H 0.08 4.30 7.91 -2.91 -0.02 4.27 16 20 C 0.03 1.54 5.13 85.24 0.44 1.98 16 21 N -0.83 -46.93 10.97 21.82 0.24 -46.69 16 22 Si 0.99 39.88 29.59 68.60 2.03 41.91 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 24 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 25 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 26 C -0.22 -10.82 9.74 22.48 0.22 -10.60 16 27 C -0.10 -4.17 9.90 22.13 0.22 -3.96 16 28 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.09 1.14 8.14 -2.38 -0.02 1.13 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.11 1.35 8.07 -2.39 -0.02 1.33 16 34 H 0.11 1.37 6.29 -2.39 -0.02 1.35 16 35 H 0.10 2.33 5.52 -2.39 -0.01 2.32 16 36 H 0.05 1.79 7.42 -2.39 -0.02 1.77 16 37 H 0.05 1.45 8.06 -2.39 -0.02 1.43 16 38 H 0.05 1.02 8.12 -2.39 -0.02 1.00 16 39 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.08 1.31 8.12 -2.38 -0.02 1.29 16 41 H 0.05 1.20 8.12 -2.39 -0.02 1.18 16 42 H 0.07 1.17 6.47 -2.39 -0.02 1.16 16 43 H 0.08 1.09 8.12 -2.39 -0.02 1.07 16 44 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.41 10.34 6.51 -92.71 -0.60 9.73 16 46 H 0.09 5.14 6.24 -2.91 -0.02 5.12 16 47 H 0.09 5.72 6.18 -2.91 -0.02 5.71 16 48 H 0.29 14.72 8.30 -92.71 -0.77 13.95 16 49 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 50 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -76.18 403.26 1.23 -74.95 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: 0.33 Total: 38.29 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 8.55 Total: -7.71 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -8.21 Total: -107.51 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -1.47 Total: -39.93 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -76.18 1.23 -74.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104985821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.287 kcal (2) G-P(sol) polarization free energy of solvation -76.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds