Wall clock time and date at job start Tue Mar 31 2020 18:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00368 * 2 1 4 4 C 1.50706 * 109.47391 * 89.99508 * 3 2 1 5 5 H 1.07995 * 119.99568 * 0.02562 * 4 3 2 6 6 C 1.37869 * 119.99790 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00532 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99870 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47528 * 89.99594 * 8 6 4 10 10 H 1.48496 * 109.47137 * 210.00150 * 8 6 4 11 11 H 1.48502 * 109.46860 * 329.99846 * 8 6 4 12 12 C 1.34782 * 119.99560 * 180.26826 * 2 1 3 13 13 O 1.21282 * 119.99376 * 184.65820 * 12 2 1 14 14 C 1.50694 * 120.00084 * 4.66511 * 12 2 1 15 15 H 1.09005 * 109.47388 * 45.94897 * 14 12 2 16 16 C 1.52994 * 109.47335 * 285.94138 * 14 12 2 17 17 C 1.52999 * 109.47318 * 180.02562 * 16 14 12 18 18 C 1.52996 * 109.46913 * 60.00084 * 17 16 14 19 19 C 1.52996 * 109.47539 * 299.99847 * 18 17 16 20 20 C 1.52999 * 109.46893 * 60.00141 * 19 18 17 21 21 H 1.08996 * 109.47521 * 59.99787 * 20 19 18 22 22 C 1.50694 * 109.47226 * 180.02562 * 20 19 18 23 23 O 1.21284 * 120.00125 * 119.99790 * 22 20 19 24 24 N 1.34781 * 119.99992 * 299.99880 * 22 20 19 25 25 C 1.46503 * 119.99899 * 359.97438 * 24 22 20 26 26 C 1.46497 * 120.00071 * 180.02562 * 24 22 20 27 27 C 1.52998 * 109.47345 * 89.99690 * 26 24 22 28 28 C 1.47198 * 109.47521 * 179.97438 * 27 26 24 29 29 N 8.28695 * 132.73701 * 245.33818 * 2 1 3 30 30 H 1.08994 * 109.47093 * 84.63678 * 1 2 3 31 31 H 1.08995 * 109.47017 * 204.64141 * 1 2 3 32 32 H 1.09001 * 109.46965 * 324.63554 * 1 2 3 33 33 H 1.09000 * 109.47414 * 210.00039 * 3 2 1 34 34 H 1.09002 * 109.46821 * 329.99903 * 3 2 1 35 35 H 0.97002 * 120.00563 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.47265 * 300.00704 * 16 14 12 37 37 H 1.09005 * 109.46856 * 59.99838 * 16 14 12 38 38 H 1.09000 * 109.47322 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.47451 * 300.00024 * 17 16 14 40 40 H 1.09006 * 109.47242 * 60.00429 * 18 17 16 41 41 H 1.09004 * 109.47124 * 179.97438 * 18 17 16 42 42 H 1.08992 * 109.47466 * 180.02562 * 19 18 17 43 43 H 1.08997 * 109.47092 * 300.00515 * 19 18 17 44 44 H 1.08993 * 109.46985 * 89.99993 * 25 24 22 45 45 H 1.08997 * 109.46960 * 210.00170 * 25 24 22 46 46 H 1.08998 * 109.46876 * 330.00219 * 25 24 22 47 47 H 1.09003 * 109.47105 * 210.00102 * 26 24 22 48 48 H 1.09002 * 109.47378 * 329.99703 * 26 24 22 49 49 H 1.08995 * 109.47710 * 300.00251 * 27 26 24 50 50 H 1.09007 * 109.46987 * 60.00151 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0981 1.0959 2.2417 6 6 3.1261 2.8779 1.6727 7 7 3.5526 3.6185 0.6731 8 14 3.4380 3.4170 3.4338 9 1 4.7334 2.8603 3.8999 10 1 3.4852 4.8998 3.4966 11 1 2.3432 2.9192 4.3050 12 6 2.1389 -1.1673 -0.0055 13 8 3.3487 -1.1694 0.0798 14 6 1.3891 -2.4696 -0.1177 15 1 0.6425 -2.3922 -0.9082 16 6 0.6951 -2.7748 1.2112 17 6 -0.0657 -4.0973 1.0974 18 6 0.9155 -5.2230 0.7643 19 6 1.6095 -4.9179 -0.5647 20 6 2.3703 -3.5954 -0.4509 21 1 3.1168 -3.6724 0.3395 22 6 3.0534 -3.2946 -1.7600 23 8 2.7822 -2.2798 -2.3665 24 7 3.9657 -4.1532 -2.2570 25 6 4.2936 -5.3787 -1.5243 26 6 4.6302 -3.8605 -3.5294 27 6 5.9058 -3.0579 -3.2659 28 6 6.5738 -2.7644 -4.5443 29 7 7.0888 -2.5397 -5.5314 30 1 -0.3633 0.0961 -1.0231 31 1 -0.3633 -0.9340 0.4285 32 1 -0.3633 0.8381 0.5948 33 1 3.1500 1.1383 -0.5138 34 1 1.6085 2.0283 -0.5139 35 1 4.0288 4.4447 0.8503 36 1 1.4416 -2.8522 2.0016 37 1 -0.0036 -1.9725 1.4488 38 1 -0.5605 -4.3145 2.0441 39 1 -0.8123 -4.0203 0.3070 40 1 1.6621 -5.3001 1.5548 41 1 0.3736 -6.1653 0.6836 42 1 2.3082 -5.7201 -0.8023 43 1 0.8630 -4.8408 -1.3551 44 1 3.6308 -6.1822 -1.8452 45 1 5.3276 -5.6576 -1.7272 46 1 4.1664 -5.2079 -0.4553 47 1 4.8855 -4.7949 -4.0294 48 1 3.9604 -3.2802 -4.1641 49 1 5.6505 -2.1236 -2.7660 50 1 6.5756 -3.6383 -2.6312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154929597.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:26 Heat of formation + Delta-G solvation = -45.163935 kcal Electronic energy + Delta-G solvation = -30734.953188 eV Core-core repulsion = 26762.374094 eV Total energy + Delta-G solvation = -3972.579095 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.84678 -38.89879 -37.25768 -36.86155 -35.68600 -34.66067 -32.68624 -32.37297 -31.03740 -30.53739 -27.64470 -27.06202 -25.87697 -25.10296 -23.57429 -22.90750 -22.01402 -20.11621 -19.37874 -18.23135 -17.79900 -17.11426 -16.40080 -16.25262 -16.22583 -15.37345 -15.32363 -15.04232 -14.68934 -14.57734 -13.99536 -13.97184 -13.90340 -13.62014 -13.43247 -13.07153 -12.95964 -12.74986 -12.55169 -12.43705 -12.34165 -12.30997 -11.94224 -11.91083 -11.81682 -11.52163 -11.34918 -11.23462 -11.13122 -11.04302 -10.91449 -10.70920 -10.62887 -10.47224 -10.22723 -10.04416 -9.52610 -9.49859 -8.83115 -8.62904 -8.36229 -7.45842 -5.96158 -4.00676 2.51187 2.71364 2.83313 2.92230 3.34570 3.40153 3.42232 3.64355 3.98616 4.06494 4.39071 4.49552 4.51437 4.70643 4.74027 4.82186 4.88124 5.01899 5.10546 5.14278 5.14617 5.22835 5.26510 5.30843 5.36469 5.39314 5.43812 5.47913 5.60161 5.66962 5.74932 5.75739 5.82174 5.95859 5.99342 6.00035 6.04406 6.09949 6.18290 6.32689 6.35533 6.44609 7.19998 7.28219 7.46567 7.58070 7.69870 8.00925 8.28656 8.33754 8.61200 9.00282 9.28480 9.64157 11.11717 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008787 B = 0.004256 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.841903 B = 6577.789526 C = 8865.359375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.600 5.600 3 C 0.249 3.751 4 C -0.521 4.521 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.525 3.475 13 O -0.544 6.544 14 C -0.089 4.089 15 H 0.092 0.908 16 C -0.119 4.119 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.084 4.084 21 H 0.107 0.893 22 C 0.529 3.471 23 O -0.515 6.515 24 N -0.623 5.623 25 C 0.076 3.924 26 C 0.126 3.874 27 C -0.048 4.048 28 C 0.215 3.785 29 N -0.440 5.440 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.028 0.972 35 H 0.262 0.738 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.092 0.908 49 H 0.120 0.880 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.778 -23.584 -1.692 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.332 5.332 3 C 0.130 3.870 4 C -0.560 4.560 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.311 3.689 13 O -0.422 6.422 14 C -0.111 4.111 15 H 0.110 0.890 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.106 4.106 21 H 0.125 0.875 22 C 0.317 3.683 23 O -0.389 6.389 24 N -0.358 5.358 25 C -0.067 4.067 26 C 0.001 3.999 27 C -0.089 4.089 28 C -0.103 4.103 29 N -0.118 5.118 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.110 0.890 49 H 0.138 0.862 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.438 -22.475 -3.497 23.174 hybrid contribution 0.079 0.445 1.397 1.468 sum -4.359 -22.030 -2.100 22.555 Atomic orbital electron populations 1.21860 0.82007 1.02488 1.00674 1.47980 1.05811 1.07751 1.71634 1.19201 0.92429 0.78256 0.97140 1.21443 1.36136 1.06007 0.92400 0.92569 1.24933 0.95560 0.96470 0.97211 1.69942 1.38596 1.14335 1.30625 0.86536 0.78679 0.77521 0.84879 1.20642 1.21232 1.19972 1.19902 0.87761 0.84634 0.76558 1.90606 1.14212 1.87006 1.50369 1.21153 0.97713 0.93006 0.99215 0.89004 1.21721 0.99905 0.97859 0.96141 1.21563 0.97879 0.94467 1.01715 1.21534 0.98706 0.98267 0.96992 1.21831 0.99820 0.95679 0.98662 1.21108 0.97988 0.95703 0.95765 0.87526 1.20604 0.78609 0.82359 0.86724 1.90750 1.62970 1.25027 1.60108 1.47732 1.42025 1.23063 1.22946 1.21988 1.01088 0.86127 0.97526 1.21202 0.92622 0.99850 0.86228 1.19742 0.96521 1.04614 0.88049 1.28989 0.93540 0.93127 0.94628 1.81213 1.09643 1.09056 1.11839 0.93980 0.91519 0.91207 0.94066 0.95364 0.92837 0.91088 0.90070 0.91609 0.91782 0.91588 0.91699 0.90285 0.91479 0.92229 0.91070 0.90357 0.89864 0.88993 0.86217 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 9.96 59.85 0.60 1.84 16 2 N -0.60 -13.33 2.86 -182.96 -0.52 -13.85 16 3 C 0.25 6.83 5.15 -5.19 -0.03 6.80 16 4 C -0.52 -15.10 9.39 -34.44 -0.32 -15.42 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 8 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 9 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.53 11.04 5.52 -10.99 -0.06 10.98 16 13 O -0.54 -13.53 14.61 -9.42 -0.14 -13.67 16 14 C -0.09 -1.30 0.88 -91.77 -0.08 -1.38 16 15 H 0.09 1.32 7.63 -51.93 -0.40 0.92 16 16 C -0.12 -1.42 4.87 -26.73 -0.13 -1.55 16 17 C -0.12 -1.00 5.92 -26.73 -0.16 -1.15 16 18 C -0.12 -0.84 5.92 -26.74 -0.16 -1.00 16 19 C -0.12 -0.98 4.84 -26.73 -0.13 -1.11 16 20 C -0.08 -1.03 0.88 -91.77 -0.08 -1.11 16 21 H 0.11 1.36 7.21 -51.93 -0.37 0.98 16 22 C 0.53 7.45 6.24 -10.99 -0.07 7.39 16 23 O -0.52 -9.70 14.12 -9.42 -0.13 -9.83 16 24 N -0.62 -6.19 2.87 -181.58 -0.52 -6.72 16 25 C 0.08 0.44 8.80 59.85 0.53 0.97 16 26 C 0.13 1.15 5.36 -4.04 -0.02 1.13 16 27 C -0.05 -0.46 6.03 -29.52 -0.18 -0.64 16 28 C 0.22 2.59 15.43 -20.77 -0.32 2.27 16 29 N -0.44 -6.53 18.54 42.15 0.78 -5.75 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.90 4.01 -51.93 -0.21 0.69 16 32 H 0.07 1.20 8.11 -51.93 -0.42 0.77 16 33 H 0.04 1.28 7.49 -51.93 -0.39 0.90 16 34 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.99 5.45 -51.93 -0.28 0.71 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.47 4.53 -51.93 -0.24 0.23 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.25 6.95 -51.93 -0.36 -0.11 16 45 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 46 H 0.08 0.46 6.01 -51.93 -0.31 0.15 16 47 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 48 H 0.09 1.03 7.42 -51.93 -0.39 0.65 16 49 H 0.12 1.52 8.14 -51.93 -0.42 1.09 16 50 H 0.11 0.76 8.14 -51.92 -0.42 0.34 16 LS Contribution 396.22 15.07 5.97 5.97 Total: -1.00 -38.36 396.22 -7.53 -45.89 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.97 Total: -2.22 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -0.71 Total: 9.65 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.47 Total: -52.94 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.27 Total: -23.50 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.36 -7.53 -45.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154929597.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.725 kcal (2) G-P(sol) polarization free energy of solvation -38.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds