Wall clock time and date at job start Tue Mar 31 2020 18:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00368 * 2 1 4 4 C 1.50706 * 109.47391 * 89.99508 * 3 2 1 5 5 H 1.07995 * 119.99568 * 0.02562 * 4 3 2 6 6 C 1.37869 * 119.99790 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00532 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99870 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47528 * 89.99594 * 8 6 4 10 10 H 1.48496 * 109.47137 * 210.00150 * 8 6 4 11 11 H 1.48502 * 109.46860 * 329.99846 * 8 6 4 12 12 C 1.34782 * 119.99560 * 180.26826 * 2 1 3 13 13 O 1.21282 * 119.99376 * 184.65820 * 12 2 1 14 14 C 1.50694 * 120.00084 * 4.66511 * 12 2 1 15 15 H 1.09005 * 109.47388 * 45.94897 * 14 12 2 16 16 C 1.52994 * 109.47335 * 285.94138 * 14 12 2 17 17 C 1.52999 * 109.47318 * 180.02562 * 16 14 12 18 18 C 1.52996 * 109.46913 * 60.00084 * 17 16 14 19 19 C 1.52996 * 109.47539 * 299.99847 * 18 17 16 20 20 C 1.52999 * 109.46893 * 60.00141 * 19 18 17 21 21 H 1.08996 * 109.47521 * 59.99787 * 20 19 18 22 22 C 1.50694 * 109.47226 * 180.02562 * 20 19 18 23 23 O 1.21284 * 120.00125 * 119.99790 * 22 20 19 24 24 N 1.34781 * 119.99992 * 299.99880 * 22 20 19 25 25 C 1.46503 * 119.99899 * 359.97438 * 24 22 20 26 26 C 1.46497 * 120.00071 * 180.02562 * 24 22 20 27 27 C 1.52998 * 109.47345 * 89.99690 * 26 24 22 28 28 C 1.47198 * 109.47521 * 179.97438 * 27 26 24 29 29 N 8.28695 * 132.73701 * 245.33818 * 2 1 3 30 30 H 1.08994 * 109.47093 * 84.63678 * 1 2 3 31 31 H 1.08995 * 109.47017 * 204.64141 * 1 2 3 32 32 H 1.09001 * 109.46965 * 324.63554 * 1 2 3 33 33 H 1.09000 * 109.47414 * 210.00039 * 3 2 1 34 34 H 1.09002 * 109.46821 * 329.99903 * 3 2 1 35 35 H 0.97002 * 120.00563 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.47265 * 300.00704 * 16 14 12 37 37 H 1.09005 * 109.46856 * 59.99838 * 16 14 12 38 38 H 1.09000 * 109.47322 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.47451 * 300.00024 * 17 16 14 40 40 H 1.09006 * 109.47242 * 60.00429 * 18 17 16 41 41 H 1.09004 * 109.47124 * 179.97438 * 18 17 16 42 42 H 1.08992 * 109.47466 * 180.02562 * 19 18 17 43 43 H 1.08997 * 109.47092 * 300.00515 * 19 18 17 44 44 H 1.08993 * 109.46985 * 89.99993 * 25 24 22 45 45 H 1.08997 * 109.46960 * 210.00170 * 25 24 22 46 46 H 1.08998 * 109.46876 * 330.00219 * 25 24 22 47 47 H 1.09003 * 109.47105 * 210.00102 * 26 24 22 48 48 H 1.09002 * 109.47378 * 329.99703 * 26 24 22 49 49 H 1.08995 * 109.47710 * 300.00251 * 27 26 24 50 50 H 1.09007 * 109.46987 * 60.00151 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0981 1.0959 2.2417 6 6 3.1261 2.8779 1.6727 7 7 3.5526 3.6185 0.6731 8 14 3.4380 3.4170 3.4338 9 1 4.7334 2.8603 3.8999 10 1 3.4852 4.8998 3.4966 11 1 2.3432 2.9192 4.3050 12 6 2.1389 -1.1673 -0.0055 13 8 3.3487 -1.1694 0.0798 14 6 1.3891 -2.4696 -0.1177 15 1 0.6425 -2.3922 -0.9082 16 6 0.6951 -2.7748 1.2112 17 6 -0.0657 -4.0973 1.0974 18 6 0.9155 -5.2230 0.7643 19 6 1.6095 -4.9179 -0.5647 20 6 2.3703 -3.5954 -0.4509 21 1 3.1168 -3.6724 0.3395 22 6 3.0534 -3.2946 -1.7600 23 8 2.7822 -2.2798 -2.3665 24 7 3.9657 -4.1532 -2.2570 25 6 4.2936 -5.3787 -1.5243 26 6 4.6302 -3.8605 -3.5294 27 6 5.9058 -3.0579 -3.2659 28 6 6.5738 -2.7644 -4.5443 29 7 7.0888 -2.5397 -5.5314 30 1 -0.3633 0.0961 -1.0231 31 1 -0.3633 -0.9340 0.4285 32 1 -0.3633 0.8381 0.5948 33 1 3.1500 1.1383 -0.5138 34 1 1.6085 2.0283 -0.5139 35 1 4.0288 4.4447 0.8503 36 1 1.4416 -2.8522 2.0016 37 1 -0.0036 -1.9725 1.4488 38 1 -0.5605 -4.3145 2.0441 39 1 -0.8123 -4.0203 0.3070 40 1 1.6621 -5.3001 1.5548 41 1 0.3736 -6.1653 0.6836 42 1 2.3082 -5.7201 -0.8023 43 1 0.8630 -4.8408 -1.3551 44 1 3.6308 -6.1822 -1.8452 45 1 5.3276 -5.6576 -1.7272 46 1 4.1664 -5.2079 -0.4553 47 1 4.8855 -4.7949 -4.0294 48 1 3.9604 -3.2802 -4.1641 49 1 5.6505 -2.1236 -2.7660 50 1 6.5756 -3.6383 -2.6312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154929597.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:25 Heat of formation + Delta-G solvation = -70.603247 kcal Electronic energy + Delta-G solvation = -30736.056320 eV Core-core repulsion = 26762.374094 eV Total energy + Delta-G solvation = -3973.682226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.94618 -40.22372 -38.36017 -37.90930 -36.71383 -36.45207 -34.74109 -33.32052 -32.14064 -31.38040 -29.58638 -27.70690 -27.40269 -26.21313 -25.16368 -23.74617 -23.35961 -20.89549 -20.51330 -19.62672 -18.73429 -18.65536 -18.05697 -17.70480 -17.34953 -16.86493 -16.30140 -16.20556 -15.98717 -15.88926 -15.41741 -14.89396 -14.76439 -14.75441 -14.50173 -14.22605 -14.02466 -13.82758 -13.79312 -13.61301 -13.56399 -13.44041 -13.32879 -13.10453 -12.98959 -12.82572 -12.77508 -12.63255 -12.38941 -12.23546 -12.13307 -12.08722 -11.95803 -11.73250 -11.59013 -11.36613 -11.05211 -10.65332 -10.52832 -10.26600 -9.64389 -9.32225 -8.20753 -6.37030 1.35600 1.39304 1.49457 1.53069 1.69602 1.81274 2.05314 2.07032 2.34113 2.54126 3.04935 3.07561 3.53199 3.60862 3.72055 3.98413 4.01955 4.09712 4.23656 4.34017 4.34602 4.40441 4.44374 4.44527 4.48885 4.52677 4.59647 4.68817 4.77394 4.78905 4.85990 4.92530 4.98632 4.99661 5.07279 5.08818 5.22048 5.24639 5.27131 5.33349 5.39672 5.44687 5.58835 5.61161 5.63892 5.89317 6.07642 6.42103 6.47020 6.71501 6.90715 7.29299 7.30791 7.62858 8.86292 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008787 B = 0.004256 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.841903 B = 6577.789526 C = 8865.359375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.615 5.615 3 C 0.266 3.734 4 C -0.536 4.536 5 H 0.056 0.944 6 C 0.004 3.996 7 N -0.933 5.933 8 Si 0.972 3.028 9 H -0.278 1.278 10 H -0.276 1.276 11 H -0.258 1.258 12 C 0.514 3.486 13 O -0.593 6.593 14 C -0.077 4.077 15 H 0.096 0.904 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.081 4.081 21 H 0.100 0.900 22 C 0.517 3.483 23 O -0.579 6.579 24 N -0.614 5.614 25 C 0.063 3.937 26 C 0.126 3.874 27 C -0.039 4.039 28 C 0.241 3.759 29 N -0.489 5.489 30 H 0.054 0.946 31 H 0.105 0.895 32 H 0.064 0.936 33 H -0.013 1.013 34 H 0.011 0.989 35 H 0.266 0.734 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.127 0.873 48 H 0.064 0.936 49 H 0.084 0.916 50 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.034 -27.480 0.294 28.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.346 5.346 3 C 0.144 3.856 4 C -0.575 4.575 5 H 0.074 0.926 6 C -0.195 4.195 7 N -0.573 5.573 8 Si 0.795 3.205 9 H -0.204 1.204 10 H -0.201 1.201 11 H -0.182 1.182 12 C 0.303 3.697 13 O -0.474 6.474 14 C -0.099 4.099 15 H 0.114 0.886 16 C -0.153 4.153 17 C -0.150 4.150 18 C -0.152 4.152 19 C -0.150 4.150 20 C -0.103 4.103 21 H 0.118 0.882 22 C 0.306 3.694 23 O -0.457 6.457 24 N -0.347 5.347 25 C -0.078 4.078 26 C 0.001 3.999 27 C -0.080 4.080 28 C -0.077 4.077 29 N -0.167 5.167 30 H 0.073 0.927 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.006 0.994 34 H 0.029 0.971 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.126 0.874 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.116 0.884 46 H 0.097 0.903 47 H 0.145 0.855 48 H 0.082 0.918 49 H 0.103 0.897 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.723 -26.448 -1.503 27.102 hybrid contribution 0.513 1.653 0.728 1.878 sum -5.209 -24.795 -0.774 25.348 Atomic orbital electron populations 1.22110 0.78776 1.04426 1.01835 1.48054 1.07920 1.06527 1.72077 1.18605 0.90432 0.80558 0.95985 1.21682 1.36603 1.06411 0.92768 0.92589 1.25944 0.94901 0.96367 1.02255 1.70088 1.39120 1.14820 1.33314 0.85360 0.78802 0.77447 0.78868 1.20436 1.20098 1.18198 1.21132 0.87673 0.86200 0.74651 1.90554 1.16675 1.87942 1.52254 1.21149 0.97785 0.89937 1.01033 0.88579 1.21737 0.99577 1.00207 0.93770 1.21569 0.97929 0.92403 1.03141 1.21565 0.98615 0.98830 0.96213 1.21861 1.00012 0.93553 0.99565 1.21166 0.97694 0.97018 0.94424 0.88166 1.21083 0.79182 0.82006 0.87087 1.90724 1.65314 1.27744 1.61947 1.47795 1.40365 1.23497 1.23013 1.22378 1.03561 0.84656 0.97221 1.21289 0.91391 1.01287 0.85941 1.19795 0.97543 1.03624 0.87055 1.29297 0.92285 0.91714 0.94364 1.81231 1.11542 1.10539 1.13406 0.92713 0.87664 0.91697 0.99441 0.97091 0.92515 0.92287 0.90566 0.89877 0.90758 0.91265 0.88865 0.87445 0.91341 0.89330 0.88398 0.90263 0.85540 0.91769 0.89748 0.83596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.42 9.96 127.77 1.27 3.69 16 2 N -0.61 -28.81 2.86 -851.13 -2.43 -31.24 16 3 C 0.27 15.66 5.15 85.64 0.44 16.10 16 4 C -0.54 -32.39 9.39 25.60 0.24 -32.15 16 5 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 6 C 0.00 0.22 5.46 84.65 0.46 0.68 16 7 N -0.93 -59.32 13.29 21.44 0.28 -59.03 16 8 Si 0.97 46.13 29.54 68.60 2.03 48.15 16 9 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 12 C 0.51 22.72 5.52 87.65 0.48 23.20 16 13 O -0.59 -31.56 14.61 11.28 0.16 -31.39 16 14 C -0.08 -2.25 0.88 -11.54 -0.01 -2.26 16 15 H 0.10 2.72 7.63 -2.38 -0.02 2.70 16 16 C -0.12 -2.56 4.87 30.59 0.15 -2.41 16 17 C -0.11 -1.47 5.92 30.59 0.18 -1.28 16 18 C -0.11 -1.12 5.92 30.59 0.18 -0.94 16 19 C -0.11 -1.40 4.84 30.59 0.15 -1.25 16 20 C -0.08 -1.92 0.88 -11.54 -0.01 -1.93 16 21 H 0.10 2.49 7.21 -2.39 -0.02 2.47 16 22 C 0.52 14.71 6.24 87.65 0.55 15.26 16 23 O -0.58 -23.22 14.12 11.28 0.16 -23.06 16 24 N -0.61 -11.31 2.87 -846.77 -2.43 -13.74 16 25 C 0.06 0.49 8.80 127.77 1.12 1.61 16 26 C 0.13 2.18 5.36 86.38 0.46 2.64 16 27 C -0.04 -0.75 6.03 28.79 0.17 -0.58 16 28 C 0.24 5.88 15.43 89.44 1.38 7.26 16 29 N -0.49 -14.87 18.54 20.00 0.37 -14.50 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.11 2.74 4.01 -2.39 -0.01 2.73 16 32 H 0.06 2.26 8.11 -2.39 -0.02 2.25 16 33 H -0.01 -0.86 7.49 -2.39 -0.02 -0.88 16 34 H 0.01 0.67 8.07 -2.39 -0.02 0.65 16 35 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.73 5.45 -2.38 -0.01 1.72 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 42 H 0.11 0.74 4.53 -2.39 -0.01 0.73 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.09 0.25 6.95 -2.39 -0.02 0.23 16 45 H 0.10 0.31 8.07 -2.39 -0.02 0.29 16 46 H 0.08 0.66 6.01 -2.39 -0.01 0.64 16 47 H 0.13 1.14 8.07 -2.39 -0.02 1.12 16 48 H 0.06 1.51 7.42 -2.39 -0.02 1.49 16 49 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 50 H 0.15 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -93.19 396.22 6.31 -86.88 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.94 Total: 10.30 kcal Atomic # 6 Polarization: 20.40 SS G_CDS: 7.23 Total: 27.62 kcal Atomic # 7 Polarization: -114.31 SS G_CDS: -4.21 Total: -118.52 kcal Atomic # 8 Polarization: -54.77 SS G_CDS: 0.32 Total: -54.45 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -93.19 6.31 -86.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154929597.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.281 kcal (2) G-P(sol) polarization free energy of solvation -93.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds