Wall clock time and date at job start Tue Mar 31 2020 18:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00182 * 2 1 4 4 C 1.53001 * 109.47416 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47106 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47393 * 180.02562 * 5 4 3 7 7 C 1.46906 * 110.99949 * 293.95693 * 6 5 4 8 8 C 1.46898 * 111.00485 * 170.00138 * 6 5 4 9 9 C 1.52995 * 109.47332 * 190.00334 * 8 6 5 10 10 N 1.46504 * 109.47304 * 180.02562 * 9 8 6 11 11 C 1.34775 * 119.99968 * 179.97438 * 10 9 8 12 12 O 1.21581 * 120.00275 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99660 * 179.97438 * 11 10 9 14 14 C 1.39238 * 119.99647 * 184.29115 * 13 11 10 15 15 C 1.39490 * 119.83647 * 324.69823 * 14 13 11 16 16 C 1.36364 * 120.17166 * 180.30102 * 15 14 13 17 17 C 1.40873 * 119.82804 * 359.47909 * 16 15 14 18 18 C 1.41159 * 120.16700 * 180.25259 * 17 16 15 19 19 H 1.07994 * 120.00020 * 215.02006 * 18 17 16 20 20 C 1.39893 * 119.99767 * 35.01581 * 18 17 16 21 21 N 1.30880 * 119.99961 * 355.54049 * 20 18 17 22 22 Si 1.86796 * 119.99962 * 175.54569 * 20 18 17 23 23 H 1.48496 * 109.47393 * 90.00331 * 22 20 18 24 24 H 1.48502 * 109.47160 * 209.99900 * 22 20 18 25 25 H 1.48496 * 109.47164 * 329.99543 * 22 20 18 26 26 C 1.40875 * 119.67207 * 0.52306 * 17 16 15 27 27 C 1.36367 * 119.82519 * 359.72935 * 26 17 16 28 28 H 1.09000 * 109.46801 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46873 * 299.99187 * 1 2 3 30 30 H 1.08992 * 109.47451 * 59.99666 * 1 2 3 31 31 H 1.09001 * 109.46691 * 60.00362 * 3 2 1 32 32 H 1.08998 * 109.47749 * 300.00585 * 3 2 1 33 33 H 1.09001 * 109.47003 * 60.00420 * 4 3 2 34 34 H 1.08998 * 109.47157 * 299.99937 * 4 3 2 35 35 H 1.09001 * 109.47074 * 60.00185 * 5 4 3 36 36 H 1.08998 * 109.47677 * 300.00218 * 5 4 3 37 37 H 1.08997 * 109.47020 * 296.04337 * 7 6 5 38 38 H 1.08996 * 109.47278 * 56.04039 * 7 6 5 39 39 H 1.09003 * 109.46867 * 176.04323 * 7 6 5 40 40 H 1.08995 * 109.47255 * 69.99979 * 8 6 5 41 41 H 1.09003 * 109.46679 * 310.00120 * 8 6 5 42 42 H 1.09001 * 109.47538 * 59.99305 * 9 8 6 43 43 H 1.09003 * 109.47064 * 299.99551 * 9 8 6 44 44 H 0.96997 * 119.99714 * 359.97438 * 10 9 8 45 45 H 0.96999 * 120.00338 * 4.28557 * 13 11 10 46 46 H 1.07999 * 119.90930 * 0.02712 * 15 14 13 47 47 H 1.07999 * 120.08778 * 179.70269 * 16 15 14 48 48 H 0.97001 * 119.99957 * 179.97438 * 21 20 18 49 49 H 1.07996 * 120.08670 * 179.70906 * 26 17 16 50 50 H 1.08005 * 119.91570 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6221 2.4665 -0.0012 7 6 6.1040 1.8688 1.2512 8 6 6.2534 3.7715 -0.2388 9 6 7.7514 3.5768 -0.4811 10 7 8.3811 4.8784 -0.7174 11 6 9.7056 4.9529 -0.9551 12 8 10.3781 3.9402 -0.9730 13 7 10.2848 6.1503 -1.1730 14 6 11.6348 6.2202 -1.5067 15 6 12.5357 5.3141 -0.9473 16 6 13.8603 5.3802 -1.2646 17 6 14.3163 6.3599 -2.1683 18 6 15.6851 6.4314 -2.5059 19 1 16.1468 7.3905 -2.6885 20 6 16.4434 5.2600 -2.6039 21 7 15.9073 4.1059 -2.2980 22 14 18.2212 5.3429 -3.1713 23 1 19.1085 5.5233 -1.9943 24 1 18.5769 4.0822 -3.8707 25 1 18.3914 6.4891 -4.0999 26 6 13.4004 7.2716 -2.7292 27 6 12.0796 7.1963 -2.3983 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6886 1.8462 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8567 0.6439 -0.8909 34 1 3.8575 0.6436 0.8891 35 1 3.8364 3.1227 0.8905 36 1 3.8358 3.1239 -0.8895 37 1 5.8650 2.5294 2.0846 38 1 5.6208 0.9036 1.4027 39 1 7.1837 1.7299 1.1957 40 1 6.1062 4.4102 0.6321 41 1 5.8017 4.2397 -1.1134 42 1 7.8987 2.9380 -1.3520 43 1 8.2032 3.1086 0.3934 44 1 7.8447 5.6864 -0.7028 45 1 9.7611 6.9633 -1.0975 46 1 12.1840 4.5610 -0.2577 47 1 14.5574 4.6810 -0.8270 48 1 16.4330 3.2935 -2.3662 49 1 13.7434 8.0284 -3.4191 50 1 11.3761 7.8943 -2.8277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174714122.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:20 Heat of formation + Delta-G solvation = -46.426847 kcal Electronic energy + Delta-G solvation = -27284.231102 eV Core-core repulsion = 23311.597243 eV Total energy + Delta-G solvation = -3972.633859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.89660 -38.81619 -38.01576 -37.30939 -34.89210 -34.23447 -32.95999 -32.54297 -29.57073 -29.32260 -28.36609 -27.78333 -26.50552 -24.96626 -24.04951 -21.95153 -21.36646 -21.19196 -20.96404 -19.92592 -17.89058 -17.22098 -17.05268 -16.76683 -16.57283 -16.16485 -15.91594 -15.34778 -15.06108 -15.03447 -14.54544 -14.41919 -14.10929 -13.88758 -13.71852 -13.50263 -12.93043 -12.67477 -12.61934 -12.27381 -12.21761 -12.15326 -12.02872 -11.76683 -11.61651 -11.47956 -11.38398 -11.30340 -11.13228 -11.10104 -10.86109 -10.43943 -10.13936 -9.93934 -9.81869 -9.54562 -9.03936 -8.84364 -8.74921 -8.68897 -7.44707 -6.79581 -6.52229 -4.26037 2.71915 2.87586 3.11468 3.15069 3.16537 3.22117 3.26967 3.75314 3.80659 4.04508 4.44002 4.58113 4.65081 4.68632 4.74757 4.79828 4.82031 4.85314 4.90956 4.95921 5.00846 5.11632 5.17016 5.21187 5.25172 5.30775 5.59212 5.70738 5.72886 5.76774 5.83045 5.93723 6.19222 6.43298 6.53638 6.60946 6.70590 6.71153 6.86978 6.90877 7.11733 7.22197 7.35450 7.45144 7.72257 7.90038 8.09298 8.16567 8.37075 8.53584 8.74989 9.00510 9.01259 9.17247 10.38948 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029177 B = 0.001481 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.415194 B =18907.450211 C =19484.409960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.062 3.938 4 C -0.118 4.118 5 C 0.060 3.940 6 N -0.537 5.537 7 C 0.014 3.986 8 C 0.047 3.953 9 C 0.143 3.857 10 N -0.754 5.754 11 C 0.695 3.305 12 O -0.572 6.572 13 N -0.669 5.669 14 C 0.025 3.975 15 C -0.094 4.094 16 C -0.142 4.142 17 C 0.098 3.902 18 C -0.465 4.465 19 H 0.074 0.926 20 C 0.069 3.931 21 N -0.809 5.809 22 Si 0.914 3.086 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.203 4.203 27 C -0.117 4.117 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.027 0.973 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.040 0.960 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.390 0.610 45 H 0.390 0.610 46 H 0.108 0.892 47 H 0.130 0.870 48 H 0.278 0.722 49 H 0.096 0.904 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.025 -2.138 6.250 27.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.015 4.015 4 C -0.155 4.155 5 C -0.068 4.068 6 N -0.261 5.261 7 C -0.134 4.134 8 C -0.082 4.082 9 C 0.018 3.982 10 N -0.411 5.411 11 C 0.395 3.605 12 O -0.448 6.448 13 N -0.315 5.315 14 C -0.068 4.068 15 C -0.114 4.114 16 C -0.162 4.162 17 C 0.096 3.904 18 C -0.496 4.496 19 H 0.093 0.907 20 C -0.146 4.146 21 N -0.436 5.436 22 Si 0.739 3.261 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.188 1.188 26 C -0.223 4.223 27 C -0.137 4.137 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.223 0.777 45 H 0.223 0.777 46 H 0.126 0.874 47 H 0.147 0.853 48 H 0.089 0.911 49 H 0.114 0.886 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -26.098 -3.847 5.850 27.021 hybrid contribution -0.331 1.502 0.316 1.570 sum -26.429 -2.344 6.166 27.240 Atomic orbital electron populations 1.22745 0.80916 1.02870 0.99969 1.87882 1.19785 1.28010 1.95418 1.22480 0.94157 0.84708 1.00129 1.21511 0.92280 0.97357 1.04397 1.21981 0.87174 0.96534 1.01106 1.61771 1.05500 1.23135 1.35680 1.22581 1.02054 0.99626 0.89107 1.22251 0.94729 0.90122 1.01076 1.21022 0.90226 0.84572 1.02354 1.45002 1.07436 1.09434 1.79274 1.15979 0.81295 0.84503 0.78695 1.90946 1.61920 1.34397 1.57525 1.42096 1.10290 1.06129 1.72989 1.17097 0.80585 1.03752 1.05375 1.20674 0.93073 0.97905 0.99762 1.21299 0.93993 1.01733 0.99221 1.17720 0.93161 0.90632 0.88935 1.19452 0.94190 0.93618 1.42317 0.90742 1.25874 1.00044 0.95056 0.93614 1.69797 1.37280 0.99002 1.37514 0.86224 0.81932 0.78519 0.79410 1.19593 1.20349 1.18817 1.20666 0.92304 1.04572 1.04785 1.20043 0.96040 0.99396 0.98233 0.89543 0.94105 0.94015 0.93471 0.93180 0.89925 0.90856 0.94608 0.90446 0.95440 0.90817 0.90447 0.94172 0.90102 0.90740 0.91691 0.77700 0.77695 0.87358 0.85260 0.91143 0.88596 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.28 10.70 -35.23 -0.38 -3.66 16 3 C 0.06 0.40 5.94 37.16 0.22 0.62 16 4 C -0.12 -0.82 5.51 -26.73 -0.15 -0.96 16 5 C 0.06 0.40 4.96 -3.82 -0.02 0.38 16 6 N -0.54 -4.53 4.76 -242.92 -1.16 -5.68 16 7 C 0.01 0.11 9.13 60.07 0.55 0.66 16 8 C 0.05 0.38 5.07 -3.83 -0.02 0.37 16 9 C 0.14 1.69 5.60 -4.04 -0.02 1.66 16 10 N -0.75 -9.56 5.56 -65.23 -0.36 -9.93 16 11 C 0.69 12.75 8.39 -86.92 -0.73 12.02 16 12 O -0.57 -13.39 13.76 5.29 0.07 -13.31 16 13 N -0.67 -11.96 5.31 -14.10 -0.07 -12.04 16 14 C 0.02 0.56 6.31 -83.57 -0.53 0.03 16 15 C -0.09 -2.40 8.61 -39.79 -0.34 -2.75 16 16 C -0.14 -3.91 8.61 -39.26 -0.34 -4.25 16 17 C 0.10 2.68 5.55 -106.79 -0.59 2.09 16 18 C -0.46 -12.63 9.02 -37.85 -0.34 -12.97 16 19 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 20 C 0.07 1.81 5.42 -17.34 -0.09 1.71 16 21 N -0.81 -22.07 10.61 55.54 0.59 -21.48 16 22 Si 0.91 19.48 29.56 -169.99 -5.03 14.45 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 26 C -0.20 -4.99 9.74 -39.26 -0.38 -5.37 16 27 C -0.12 -2.59 9.90 -39.79 -0.39 -2.98 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.54 6.47 -51.93 -0.34 0.20 16 35 H 0.04 0.21 8.12 -51.93 -0.42 -0.21 16 36 H 0.08 0.46 7.93 -51.93 -0.41 0.05 16 37 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.07 0.54 6.30 -51.93 -0.33 0.21 16 39 H 0.08 0.70 6.47 -51.93 -0.34 0.36 16 40 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 41 H 0.08 0.59 7.93 -51.93 -0.41 0.18 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.84 6.55 -51.93 -0.34 0.50 16 44 H 0.39 3.53 8.49 -40.82 -0.35 3.18 16 45 H 0.39 5.28 8.83 -40.82 -0.36 4.92 16 46 H 0.11 2.82 6.22 -52.49 -0.33 2.49 16 47 H 0.13 3.71 6.15 -52.49 -0.32 3.39 16 48 H 0.28 6.96 8.30 -40.82 -0.34 6.63 16 49 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 50 H 0.09 1.67 8.06 -52.48 -0.42 1.24 16 LS Contribution 405.35 15.07 6.11 6.11 Total: -1.00 -33.32 405.35 -10.43 -43.75 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -8.14 Total: 10.24 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -2.07 Total: -8.46 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -1.01 Total: -49.12 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.30 Total: -16.97 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.32 -10.43 -43.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174714122.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.678 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds