Wall clock time and date at job start Tue Mar 31 2020 18:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00182 * 2 1 4 4 C 1.53001 * 109.47416 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47106 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47393 * 180.02562 * 5 4 3 7 7 C 1.46906 * 110.99949 * 293.95693 * 6 5 4 8 8 C 1.46898 * 111.00485 * 170.00138 * 6 5 4 9 9 C 1.52995 * 109.47332 * 190.00334 * 8 6 5 10 10 N 1.46504 * 109.47304 * 180.02562 * 9 8 6 11 11 C 1.34775 * 119.99968 * 179.97438 * 10 9 8 12 12 O 1.21581 * 120.00275 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99660 * 179.97438 * 11 10 9 14 14 C 1.39238 * 119.99647 * 184.29115 * 13 11 10 15 15 C 1.39490 * 119.83647 * 324.69823 * 14 13 11 16 16 C 1.36364 * 120.17166 * 180.30102 * 15 14 13 17 17 C 1.40873 * 119.82804 * 359.47909 * 16 15 14 18 18 C 1.41159 * 120.16700 * 180.25259 * 17 16 15 19 19 H 1.07994 * 120.00020 * 215.02006 * 18 17 16 20 20 C 1.39893 * 119.99767 * 35.01581 * 18 17 16 21 21 N 1.30880 * 119.99961 * 355.54049 * 20 18 17 22 22 Si 1.86796 * 119.99962 * 175.54569 * 20 18 17 23 23 H 1.48496 * 109.47393 * 90.00331 * 22 20 18 24 24 H 1.48502 * 109.47160 * 209.99900 * 22 20 18 25 25 H 1.48496 * 109.47164 * 329.99543 * 22 20 18 26 26 C 1.40875 * 119.67207 * 0.52306 * 17 16 15 27 27 C 1.36367 * 119.82519 * 359.72935 * 26 17 16 28 28 H 1.09000 * 109.46801 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46873 * 299.99187 * 1 2 3 30 30 H 1.08992 * 109.47451 * 59.99666 * 1 2 3 31 31 H 1.09001 * 109.46691 * 60.00362 * 3 2 1 32 32 H 1.08998 * 109.47749 * 300.00585 * 3 2 1 33 33 H 1.09001 * 109.47003 * 60.00420 * 4 3 2 34 34 H 1.08998 * 109.47157 * 299.99937 * 4 3 2 35 35 H 1.09001 * 109.47074 * 60.00185 * 5 4 3 36 36 H 1.08998 * 109.47677 * 300.00218 * 5 4 3 37 37 H 1.08997 * 109.47020 * 296.04337 * 7 6 5 38 38 H 1.08996 * 109.47278 * 56.04039 * 7 6 5 39 39 H 1.09003 * 109.46867 * 176.04323 * 7 6 5 40 40 H 1.08995 * 109.47255 * 69.99979 * 8 6 5 41 41 H 1.09003 * 109.46679 * 310.00120 * 8 6 5 42 42 H 1.09001 * 109.47538 * 59.99305 * 9 8 6 43 43 H 1.09003 * 109.47064 * 299.99551 * 9 8 6 44 44 H 0.96997 * 119.99714 * 359.97438 * 10 9 8 45 45 H 0.96999 * 120.00338 * 4.28557 * 13 11 10 46 46 H 1.07999 * 119.90930 * 0.02712 * 15 14 13 47 47 H 1.07999 * 120.08778 * 179.70269 * 16 15 14 48 48 H 0.97001 * 119.99957 * 179.97438 * 21 20 18 49 49 H 1.07996 * 120.08670 * 179.70906 * 26 17 16 50 50 H 1.08005 * 119.91570 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6221 2.4665 -0.0012 7 6 6.1040 1.8688 1.2512 8 6 6.2534 3.7715 -0.2388 9 6 7.7514 3.5768 -0.4811 10 7 8.3811 4.8784 -0.7174 11 6 9.7056 4.9529 -0.9551 12 8 10.3781 3.9402 -0.9730 13 7 10.2848 6.1503 -1.1730 14 6 11.6348 6.2202 -1.5067 15 6 12.5357 5.3141 -0.9473 16 6 13.8603 5.3802 -1.2646 17 6 14.3163 6.3599 -2.1683 18 6 15.6851 6.4314 -2.5059 19 1 16.1468 7.3905 -2.6885 20 6 16.4434 5.2600 -2.6039 21 7 15.9073 4.1059 -2.2980 22 14 18.2212 5.3429 -3.1713 23 1 19.1085 5.5233 -1.9943 24 1 18.5769 4.0822 -3.8707 25 1 18.3914 6.4891 -4.0999 26 6 13.4004 7.2716 -2.7292 27 6 12.0796 7.1963 -2.3983 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6886 1.8462 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8567 0.6439 -0.8909 34 1 3.8575 0.6436 0.8891 35 1 3.8364 3.1227 0.8905 36 1 3.8358 3.1239 -0.8895 37 1 5.8650 2.5294 2.0846 38 1 5.6208 0.9036 1.4027 39 1 7.1837 1.7299 1.1957 40 1 6.1062 4.4102 0.6321 41 1 5.8017 4.2397 -1.1134 42 1 7.8987 2.9380 -1.3520 43 1 8.2032 3.1086 0.3934 44 1 7.8447 5.6864 -0.7028 45 1 9.7611 6.9633 -1.0975 46 1 12.1840 4.5610 -0.2577 47 1 14.5574 4.6810 -0.8270 48 1 16.4330 3.2935 -2.3662 49 1 13.7434 8.0284 -3.4191 50 1 11.3761 7.8943 -2.8277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174714122.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:19 Heat of formation + Delta-G solvation = -70.581985 kcal Electronic energy + Delta-G solvation = -27285.278547 eV Core-core repulsion = 23311.597243 eV Total energy + Delta-G solvation = -3973.681304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.40783 -39.54281 -39.14144 -38.49129 -36.29367 -35.78600 -34.65971 -33.35842 -31.40180 -30.94607 -29.61736 -28.30198 -27.19943 -26.55555 -24.91983 -23.29739 -22.88680 -22.41452 -21.85200 -21.47536 -19.35685 -19.17298 -18.22734 -17.51414 -17.27425 -17.10372 -16.84847 -16.74789 -16.20057 -15.92175 -15.74549 -15.61079 -15.33558 -15.01495 -14.94612 -14.61502 -14.39859 -14.23012 -13.91585 -13.61232 -13.28543 -13.18247 -12.97302 -12.84358 -12.75733 -12.66839 -12.63373 -12.36801 -12.29045 -12.06238 -11.96275 -11.78711 -11.67756 -11.65800 -11.31686 -10.90477 -10.61389 -10.53317 -10.08406 -9.41124 -9.35560 -8.67439 -8.46134 -6.29127 0.89273 1.17193 1.40113 1.48211 1.55632 1.69524 2.21324 2.26706 2.64244 2.86084 3.13081 3.51051 3.73331 3.83030 3.96768 4.04910 4.18350 4.22247 4.40753 4.46593 4.47340 4.50934 4.52194 4.52709 4.54263 4.56876 4.62441 4.75562 4.85692 4.87064 4.93345 5.03161 5.04516 5.15023 5.16950 5.19811 5.26578 5.37027 5.43957 5.47569 5.73876 5.83465 6.00868 6.03983 6.12848 6.18503 6.22785 6.25701 6.41324 6.75189 6.99799 7.06906 7.19132 7.68558 8.46976 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029177 B = 0.001481 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.415194 B =18907.450211 C =19484.409960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.062 3.938 4 C -0.113 4.113 5 C 0.065 3.935 6 N -0.554 5.554 7 C 0.016 3.984 8 C 0.059 3.941 9 C 0.145 3.855 10 N -0.725 5.725 11 C 0.691 3.309 12 O -0.627 6.627 13 N -0.657 5.657 14 C 0.040 3.960 15 C -0.110 4.110 16 C -0.166 4.166 17 C 0.063 3.937 18 C -0.497 4.497 19 H 0.080 0.920 20 C 0.022 3.978 21 N -0.849 5.849 22 Si 0.990 3.010 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.255 1.255 26 C -0.207 4.207 27 C -0.108 4.108 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.098 0.902 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.414 0.586 45 H 0.417 0.583 46 H 0.095 0.905 47 H 0.103 0.897 48 H 0.281 0.719 49 H 0.114 0.886 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.417 0.015 5.733 29.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.015 4.015 4 C -0.151 4.151 5 C -0.063 4.063 6 N -0.279 5.279 7 C -0.132 4.132 8 C -0.069 4.069 9 C 0.020 3.980 10 N -0.383 5.383 11 C 0.391 3.609 12 O -0.507 6.507 13 N -0.305 5.305 14 C -0.054 4.054 15 C -0.130 4.130 16 C -0.187 4.187 17 C 0.061 3.939 18 C -0.528 4.528 19 H 0.098 0.902 20 C -0.189 4.189 21 N -0.478 5.478 22 Si 0.811 3.189 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.178 1.178 26 C -0.227 4.227 27 C -0.128 4.128 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.251 0.749 45 H 0.254 0.746 46 H 0.113 0.887 47 H 0.120 0.880 48 H 0.091 0.909 49 H 0.132 0.868 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -28.595 -1.632 5.353 29.138 hybrid contribution 0.185 0.810 0.531 0.986 sum -28.410 -0.822 5.884 29.024 Atomic orbital electron populations 1.22906 0.79505 1.03690 1.00919 1.87837 1.21499 1.29245 1.95635 1.22532 0.93460 0.84279 1.01192 1.21449 0.93028 0.97488 1.03159 1.21978 0.85699 0.96346 1.02241 1.61722 1.06803 1.23391 1.35959 1.22537 1.01051 1.00167 0.89462 1.22126 0.91748 0.90453 1.02575 1.21054 0.92741 0.83534 1.00687 1.44696 1.05465 1.11022 1.77157 1.16210 0.82687 0.83680 0.78289 1.90929 1.63719 1.36322 1.59742 1.41820 1.08704 1.07375 1.72624 1.17139 0.82239 1.02213 1.03852 1.20672 0.93146 0.98810 1.00391 1.21151 0.94513 1.02392 1.00620 1.18062 0.94321 0.91749 0.89780 1.19755 0.94896 0.94371 1.43824 0.90216 1.26842 1.04656 0.94256 0.93165 1.69928 1.39179 0.99814 1.38849 0.85079 0.75927 0.78742 0.79139 1.18713 1.19882 1.17838 1.20948 0.93060 1.04069 1.04651 1.20409 0.95969 0.99417 0.97053 0.88938 0.93050 0.93115 0.92225 0.92170 0.91665 0.91613 0.93302 0.89298 0.94496 0.90478 0.92095 0.92433 0.88354 0.93080 0.93122 0.74889 0.74595 0.88724 0.87956 0.90865 0.86843 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.48 16 2 O -0.42 -6.69 10.70 -148.98 -1.59 -8.29 16 3 C 0.06 0.70 5.94 71.98 0.43 1.12 16 4 C -0.11 -1.45 5.51 30.60 0.17 -1.28 16 5 C 0.06 0.70 4.96 86.30 0.43 1.13 16 6 N -0.55 -8.44 4.76 -922.46 -4.39 -12.84 16 7 C 0.02 0.24 9.13 127.69 1.17 1.41 16 8 C 0.06 0.82 5.07 86.30 0.44 1.26 16 9 C 0.14 3.27 5.60 86.38 0.48 3.75 16 10 N -0.73 -16.84 5.56 -478.54 -2.66 -19.50 16 11 C 0.69 24.64 8.39 179.05 1.50 26.14 16 12 O -0.63 -30.01 13.76 -3.97 -0.05 -30.06 16 13 N -0.66 -21.99 5.31 -316.78 -1.68 -23.67 16 14 C 0.04 1.76 6.31 38.57 0.24 2.00 16 15 C -0.11 -5.81 8.61 22.13 0.19 -5.61 16 16 C -0.17 -9.61 8.61 22.48 0.19 -9.41 16 17 C 0.06 3.55 5.55 -21.27 -0.12 3.43 16 18 C -0.50 -27.75 9.02 23.39 0.21 -27.54 16 19 H 0.08 4.18 7.85 -2.91 -0.02 4.16 16 20 C 0.02 1.16 5.42 85.24 0.46 1.63 16 21 N -0.85 -48.53 10.61 21.82 0.23 -48.30 16 22 Si 0.99 40.58 29.56 68.60 2.03 42.61 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 26 C -0.21 -10.00 9.74 22.48 0.22 -9.78 16 27 C -0.11 -4.53 9.90 22.13 0.22 -4.31 16 28 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.34 8.14 -2.39 -0.02 0.33 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 0.93 6.47 -2.39 -0.02 0.91 16 35 H 0.05 0.43 8.12 -2.39 -0.02 0.41 16 36 H 0.09 0.78 7.93 -2.39 -0.02 0.76 16 37 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.08 1.10 6.30 -2.39 -0.02 1.09 16 39 H 0.06 1.12 6.47 -2.39 -0.02 1.11 16 40 H 0.06 0.64 8.12 -2.39 -0.02 0.62 16 41 H 0.10 1.07 7.93 -2.39 -0.02 1.05 16 42 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.05 1.31 6.55 -2.39 -0.02 1.30 16 44 H 0.41 5.88 8.49 -92.71 -0.79 5.09 16 45 H 0.42 9.60 8.83 -92.71 -0.82 8.79 16 46 H 0.09 5.19 6.22 -2.91 -0.02 5.18 16 47 H 0.10 6.34 6.15 -2.91 -0.02 6.32 16 48 H 0.28 14.75 8.30 -92.71 -0.77 13.98 16 49 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 50 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -77.03 405.35 -1.30 -78.33 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: -0.65 Total: 36.31 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 7.48 Total: -14.59 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -8.50 Total: -104.31 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -1.65 Total: -38.35 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -77.03 -1.30 -78.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174714122.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.749 kcal (2) G-P(sol) polarization free energy of solvation -77.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds