Wall clock time and date at job start Tue Mar 31 2020 18:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35894 * 117.00297 * 2 1 4 4 C 1.38803 * 120.01736 * 359.73126 * 3 2 1 5 5 C 1.38180 * 120.08297 * 179.69584 * 4 3 2 6 6 C 1.38165 * 120.11982 * 0.59750 * 5 4 3 7 7 C 1.38884 * 120.04062 * 359.67882 * 6 5 4 8 8 N 1.39941 * 120.04215 * 180.02562 * 7 6 5 9 9 C 1.34776 * 119.99662 * 324.87803 * 8 7 6 10 10 O 1.21584 * 120.00318 * 4.59260 * 9 8 7 11 11 N 1.34776 * 119.99668 * 184.58742 * 9 8 7 12 12 C 1.46504 * 120.00279 * 0.02562 * 11 9 8 13 13 C 1.50695 * 109.46817 * 89.99868 * 12 11 9 14 14 H 1.08003 * 120.00712 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99987 * 180.02562 * 13 12 11 16 16 N 1.31507 * 120.00182 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99825 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46967 * 89.99765 * 17 15 13 19 19 H 1.48494 * 109.47236 * 210.00254 * 17 15 13 20 20 H 1.48506 * 109.47184 * 330.00081 * 17 15 13 21 21 C 1.46506 * 120.00014 * 179.97438 * 11 9 8 22 22 C 1.53001 * 109.46832 * 90.00204 * 21 11 9 23 23 C 1.53008 * 109.47061 * 180.02562 * 22 21 11 24 24 N 1.46897 * 109.47300 * 179.97438 * 23 22 21 25 25 C 1.46894 * 111.00018 * 169.99803 * 24 23 22 26 26 C 1.46900 * 110.99972 * 293.95589 * 24 23 22 27 27 C 1.38580 * 120.01934 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47042 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46814 * 299.99738 * 1 2 3 30 30 H 1.09000 * 109.47049 * 59.99547 * 1 2 3 31 31 H 1.08006 * 119.96547 * 359.97438 * 4 3 2 32 32 H 1.07992 * 119.93872 * 180.27573 * 5 4 3 33 33 H 1.08002 * 119.97992 * 179.70189 * 6 5 4 34 34 H 0.97002 * 120.00295 * 144.87810 * 8 7 6 35 35 H 1.09002 * 109.47055 * 209.99987 * 12 11 9 36 36 H 1.08999 * 109.46877 * 330.00047 * 12 11 9 37 37 H 0.97003 * 119.99891 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.47392 * 209.99963 * 21 11 9 39 39 H 1.09005 * 109.46913 * 330.00291 * 21 11 9 40 40 H 1.08996 * 109.47220 * 299.99602 * 22 21 11 41 41 H 1.08997 * 109.47441 * 60.00058 * 22 21 11 42 42 H 1.09001 * 109.46499 * 300.00205 * 23 22 21 43 43 H 1.09005 * 109.47026 * 59.99878 * 23 22 21 44 44 H 1.09006 * 109.47329 * 60.00272 * 25 24 23 45 45 H 1.09000 * 109.47234 * 179.97438 * 25 24 23 46 46 H 1.09004 * 109.47423 * 300.00302 * 25 24 23 47 47 H 1.08997 * 109.47383 * 59.99743 * 26 24 23 48 48 H 1.08999 * 109.47238 * 180.02562 * 26 24 23 49 49 H 1.09005 * 109.46889 * 299.99662 * 26 24 23 50 50 H 1.07995 * 120.06715 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2905 2.3752 -0.0056 5 6 1.9164 3.6070 0.0007 6 6 3.2960 3.6838 0.0002 7 6 4.0569 2.5220 0.0001 8 7 5.4542 2.5997 0.0001 9 6 6.0740 3.5904 -0.6713 10 8 5.4195 4.4639 -1.2070 11 7 7.4193 3.6130 -0.7487 12 6 8.2080 2.5603 -0.1035 13 6 8.4227 1.4275 -1.0739 14 1 8.0132 1.4859 -2.0715 15 6 9.1422 0.3163 -0.6881 16 7 9.3292 -0.6725 -1.5347 17 14 9.8500 0.2149 1.0376 18 1 8.8585 -0.4199 1.9428 19 1 11.0924 -0.5983 1.0161 20 1 10.1619 1.5822 1.5260 21 6 8.0931 4.6896 -1.4790 22 6 8.3841 5.8491 -0.5241 23 6 9.0872 6.9738 -1.2869 24 7 9.3660 8.0874 -0.3703 25 6 10.2449 9.0811 -1.0011 26 6 8.1198 8.7085 0.0979 27 6 3.4299 1.2837 -0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 0.2119 2.3184 -0.0104 32 1 1.3263 4.5115 0.0008 33 1 3.7828 4.6478 0.0003 34 1 5.9766 1.9405 0.4833 35 1 9.1729 2.9649 0.2021 36 1 7.6745 2.1920 0.7727 37 1 9.8356 -1.4540 -1.2633 38 1 9.0296 4.3167 -1.8936 39 1 7.4505 5.0375 -2.2878 40 1 7.4476 6.2221 -0.1095 41 1 9.0266 5.5013 0.2848 42 1 10.0236 6.6011 -1.7019 43 1 8.4442 7.3216 -2.0955 44 1 9.7630 9.4767 -1.8953 45 1 10.4348 9.8946 -0.3010 46 1 11.1885 8.6095 -1.2754 47 1 7.5186 7.9661 0.6227 48 1 8.3551 9.5300 0.7745 49 1 7.5610 9.0906 -0.7564 50 1 4.0194 0.3789 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178367885.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:00 Heat of formation + Delta-G solvation = -23.100390 kcal Electronic energy + Delta-G solvation = -29216.807078 eV Core-core repulsion = 25245.184731 eV Total energy + Delta-G solvation = -3971.622348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.41063 -39.49489 -37.81522 -37.19121 -35.33413 -34.21648 -32.78932 -31.62297 -30.47205 -28.82760 -28.08140 -27.63395 -27.23939 -25.82162 -23.03283 -22.69786 -22.48629 -21.50515 -20.66651 -19.36242 -18.18566 -17.35916 -17.07713 -16.17212 -15.95166 -15.74489 -15.67046 -15.46834 -15.34056 -14.97782 -14.54475 -14.41215 -14.18560 -13.87413 -13.43098 -13.35087 -13.30861 -12.64903 -12.50276 -12.45585 -12.27111 -12.23862 -12.06397 -11.82228 -11.70143 -11.53193 -11.49407 -11.30039 -11.12325 -10.86980 -10.82348 -10.72786 -10.34146 -10.23329 -9.89062 -9.66617 -9.41090 -8.77280 -8.39308 -8.23108 -7.94611 -7.56829 -6.25152 -4.28236 1.52386 1.70991 3.00862 3.14396 3.23077 3.25039 3.49046 3.63678 3.95257 4.15049 4.22526 4.47557 4.90976 5.03806 5.05230 5.09137 5.10459 5.13447 5.16505 5.23902 5.33563 5.39366 5.50103 5.57298 5.59706 5.63467 5.64138 5.72926 5.74621 5.75641 5.83808 5.95013 6.01382 6.11898 6.29795 6.36522 6.46217 6.52092 6.55065 6.60020 6.67615 6.77029 6.99038 7.01522 7.14812 7.26611 7.37228 7.55210 7.57495 8.22011 8.49408 8.81960 9.10137 9.33446 10.87286 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007642 B = 0.003802 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3663.024710 B = 7362.629708 C =10494.884278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.142 3.858 4 C -0.235 4.235 5 C -0.067 4.067 6 C -0.159 4.159 7 C 0.220 3.780 8 N -0.681 5.681 9 C 0.712 3.288 10 O -0.597 6.597 11 N -0.601 5.601 12 C 0.210 3.790 13 C -0.545 4.545 14 H 0.079 0.921 15 C 0.078 3.922 16 N -0.887 5.887 17 Si 0.869 3.131 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.263 1.263 21 C 0.140 3.860 22 C -0.131 4.131 23 C 0.058 3.942 24 N -0.548 5.548 25 C 0.025 3.975 26 C 0.022 3.978 27 C -0.183 4.183 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.142 0.858 34 H 0.416 0.584 35 H 0.040 0.960 36 H 0.020 0.980 37 H 0.267 0.733 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.035 0.965 44 H 0.023 0.977 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.024 0.976 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.648 11.008 4.803 15.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.096 3.904 4 C -0.255 4.255 5 C -0.086 4.086 6 C -0.179 4.179 7 C 0.122 3.878 8 N -0.329 5.329 9 C 0.415 3.585 10 O -0.477 6.477 11 N -0.334 5.334 12 C 0.089 3.911 13 C -0.583 4.583 14 H 0.097 0.903 15 C -0.126 4.126 16 N -0.524 5.524 17 Si 0.695 3.305 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.187 1.187 21 C 0.015 3.985 22 C -0.170 4.170 23 C -0.070 4.070 24 N -0.272 5.272 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.205 4.205 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.160 0.840 34 H 0.255 0.745 35 H 0.058 0.942 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.053 0.947 44 H 0.042 0.958 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.082 0.918 49 H 0.043 0.957 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.547 11.062 4.778 15.374 hybrid contribution 0.134 -0.282 0.321 0.447 sum -9.413 10.781 5.098 15.193 Atomic orbital electron populations 1.23000 0.78781 1.03552 1.01189 1.86067 1.21020 1.27117 1.88927 1.18573 0.91514 0.83978 0.96326 1.21079 0.99519 0.92392 1.12474 1.20749 0.94097 0.96690 0.97085 1.21263 0.93268 0.98747 1.04656 1.17220 0.82357 0.92704 0.95477 1.42810 1.04352 1.31880 1.53844 1.15716 0.82375 0.81487 0.78934 1.90817 1.64628 1.39615 1.52683 1.47059 1.03310 1.27341 1.55682 1.19755 0.91597 0.86686 0.93083 1.21391 1.35580 1.00524 1.00835 0.90260 1.24889 0.95320 0.95292 0.97132 1.69888 1.39862 1.07430 1.35215 0.86965 0.79544 0.78960 0.85028 1.19812 1.20770 1.18744 1.21141 0.97683 0.85943 0.93714 1.21993 1.00649 0.94869 0.99492 1.22077 1.00142 0.91308 0.93475 1.61970 1.15786 1.10039 1.39425 1.22369 0.97188 0.95286 0.97504 1.22423 0.91254 0.99416 0.99502 1.20103 0.91847 0.97565 1.10989 0.88544 0.92845 0.92782 0.85970 0.85922 0.84028 0.74520 0.94185 0.96266 0.92285 0.89985 0.90693 0.91729 0.91073 0.90529 0.94652 0.95843 0.91645 0.91331 0.90895 0.91808 0.95719 0.84684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.47 10.49 -19.41 -0.20 -4.68 16 3 C 0.14 2.16 6.68 -39.25 -0.26 1.90 16 4 C -0.23 -3.14 9.04 -39.39 -0.36 -3.50 16 5 C -0.07 -0.94 10.03 -39.63 -0.40 -1.34 16 6 C -0.16 -2.66 8.69 -39.37 -0.34 -3.00 16 7 C 0.22 3.93 6.30 -83.71 -0.53 3.41 16 8 N -0.68 -13.00 5.21 -14.24 -0.07 -13.08 16 9 C 0.71 14.69 8.12 -86.92 -0.71 13.98 16 10 O -0.60 -13.03 13.36 5.29 0.07 -12.96 16 11 N -0.60 -12.04 2.46 -180.80 -0.44 -12.48 16 12 C 0.21 4.50 4.03 -5.19 -0.02 4.48 16 13 C -0.54 -14.06 9.94 -34.44 -0.34 -14.41 16 14 H 0.08 2.34 8.06 -52.48 -0.42 1.91 16 15 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 16 N -0.89 -25.50 13.96 55.43 0.77 -24.73 16 17 Si 0.87 19.37 27.47 -169.99 -4.67 14.71 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 21 C 0.14 2.43 5.41 -4.04 -0.02 2.41 16 22 C -0.13 -1.96 5.46 -26.73 -0.15 -2.11 16 23 C 0.06 0.75 4.96 -3.82 -0.02 0.73 16 24 N -0.55 -6.75 5.02 -251.25 -1.26 -8.01 16 25 C 0.02 0.25 9.57 60.06 0.57 0.82 16 26 C 0.02 0.25 9.32 60.06 0.56 0.81 16 27 C -0.18 -3.12 9.90 -39.25 -0.39 -3.51 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.42 7.67 -51.92 -0.40 0.02 16 30 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 31 H 0.12 1.27 6.29 -52.48 -0.33 0.94 16 32 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.14 2.52 6.22 -52.49 -0.33 2.19 16 34 H 0.42 7.74 6.52 -40.82 -0.27 7.47 16 35 H 0.04 0.85 7.13 -51.93 -0.37 0.48 16 36 H 0.02 0.40 5.72 -51.93 -0.30 0.10 16 37 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 39 H 0.07 1.34 7.42 -51.93 -0.39 0.96 16 40 H 0.06 1.03 6.55 -51.93 -0.34 0.69 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 43 H 0.04 0.46 8.12 -51.93 -0.42 0.03 16 44 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 46 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 47 H 0.07 0.88 6.47 -51.93 -0.34 0.54 16 48 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 49 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.14 2.30 8.06 -52.49 -0.42 1.87 16 LS Contribution 402.78 15.07 6.07 6.07 Total: -1.00 -30.87 402.78 -9.34 -40.21 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -8.10 Total: 11.03 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -1.50 Total: 3.92 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -1.01 Total: -58.30 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.13 Total: -17.64 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.67 Total: 14.71 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.87 -9.34 -40.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178367885.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.111 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds