Wall clock time and date at job start Tue Mar 31 2020 18:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35894 * 117.00297 * 2 1 4 4 C 1.38803 * 120.01736 * 359.73126 * 3 2 1 5 5 C 1.38180 * 120.08297 * 179.69584 * 4 3 2 6 6 C 1.38165 * 120.11982 * 0.59750 * 5 4 3 7 7 C 1.38884 * 120.04062 * 359.67882 * 6 5 4 8 8 N 1.39941 * 120.04215 * 180.02562 * 7 6 5 9 9 C 1.34776 * 119.99662 * 324.87803 * 8 7 6 10 10 O 1.21584 * 120.00318 * 4.59260 * 9 8 7 11 11 N 1.34776 * 119.99668 * 184.58742 * 9 8 7 12 12 C 1.46504 * 120.00279 * 0.02562 * 11 9 8 13 13 C 1.50695 * 109.46817 * 89.99868 * 12 11 9 14 14 H 1.08003 * 120.00712 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99987 * 180.02562 * 13 12 11 16 16 N 1.31507 * 120.00182 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99825 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46967 * 89.99765 * 17 15 13 19 19 H 1.48494 * 109.47236 * 210.00254 * 17 15 13 20 20 H 1.48506 * 109.47184 * 330.00081 * 17 15 13 21 21 C 1.46506 * 120.00014 * 179.97438 * 11 9 8 22 22 C 1.53001 * 109.46832 * 90.00204 * 21 11 9 23 23 C 1.53008 * 109.47061 * 180.02562 * 22 21 11 24 24 N 1.46897 * 109.47300 * 179.97438 * 23 22 21 25 25 C 1.46894 * 111.00018 * 169.99803 * 24 23 22 26 26 C 1.46900 * 110.99972 * 293.95589 * 24 23 22 27 27 C 1.38580 * 120.01934 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47042 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46814 * 299.99738 * 1 2 3 30 30 H 1.09000 * 109.47049 * 59.99547 * 1 2 3 31 31 H 1.08006 * 119.96547 * 359.97438 * 4 3 2 32 32 H 1.07992 * 119.93872 * 180.27573 * 5 4 3 33 33 H 1.08002 * 119.97992 * 179.70189 * 6 5 4 34 34 H 0.97002 * 120.00295 * 144.87810 * 8 7 6 35 35 H 1.09002 * 109.47055 * 209.99987 * 12 11 9 36 36 H 1.08999 * 109.46877 * 330.00047 * 12 11 9 37 37 H 0.97003 * 119.99891 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.47392 * 209.99963 * 21 11 9 39 39 H 1.09005 * 109.46913 * 330.00291 * 21 11 9 40 40 H 1.08996 * 109.47220 * 299.99602 * 22 21 11 41 41 H 1.08997 * 109.47441 * 60.00058 * 22 21 11 42 42 H 1.09001 * 109.46499 * 300.00205 * 23 22 21 43 43 H 1.09005 * 109.47026 * 59.99878 * 23 22 21 44 44 H 1.09006 * 109.47329 * 60.00272 * 25 24 23 45 45 H 1.09000 * 109.47234 * 179.97438 * 25 24 23 46 46 H 1.09004 * 109.47423 * 300.00302 * 25 24 23 47 47 H 1.08997 * 109.47383 * 59.99743 * 26 24 23 48 48 H 1.08999 * 109.47238 * 180.02562 * 26 24 23 49 49 H 1.09005 * 109.46889 * 299.99662 * 26 24 23 50 50 H 1.07995 * 120.06715 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2905 2.3752 -0.0056 5 6 1.9164 3.6070 0.0007 6 6 3.2960 3.6838 0.0002 7 6 4.0569 2.5220 0.0001 8 7 5.4542 2.5997 0.0001 9 6 6.0740 3.5904 -0.6713 10 8 5.4195 4.4639 -1.2070 11 7 7.4193 3.6130 -0.7487 12 6 8.2080 2.5603 -0.1035 13 6 8.4227 1.4275 -1.0739 14 1 8.0132 1.4859 -2.0715 15 6 9.1422 0.3163 -0.6881 16 7 9.3292 -0.6725 -1.5347 17 14 9.8500 0.2149 1.0376 18 1 8.8585 -0.4199 1.9428 19 1 11.0924 -0.5983 1.0161 20 1 10.1619 1.5822 1.5260 21 6 8.0931 4.6896 -1.4790 22 6 8.3841 5.8491 -0.5241 23 6 9.0872 6.9738 -1.2869 24 7 9.3660 8.0874 -0.3703 25 6 10.2449 9.0811 -1.0011 26 6 8.1198 8.7085 0.0979 27 6 3.4299 1.2837 -0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 0.2119 2.3184 -0.0104 32 1 1.3263 4.5115 0.0008 33 1 3.7828 4.6478 0.0003 34 1 5.9766 1.9405 0.4833 35 1 9.1729 2.9649 0.2021 36 1 7.6745 2.1920 0.7727 37 1 9.8356 -1.4540 -1.2633 38 1 9.0296 4.3167 -1.8936 39 1 7.4505 5.0375 -2.2878 40 1 7.4476 6.2221 -0.1095 41 1 9.0266 5.5013 0.2848 42 1 10.0236 6.6011 -1.7019 43 1 8.4442 7.3216 -2.0955 44 1 9.7630 9.4767 -1.8953 45 1 10.4348 9.8946 -0.3010 46 1 11.1885 8.6095 -1.2754 47 1 7.5186 7.9661 0.6227 48 1 8.3551 9.5300 0.7745 49 1 7.5610 9.0906 -0.7564 50 1 4.0194 0.3789 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178367885.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:59 Heat of formation + Delta-G solvation = -43.035225 kcal Electronic energy + Delta-G solvation = -29217.671517 eV Core-core repulsion = 25245.184731 eV Total energy + Delta-G solvation = -3972.486787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.82856 -40.73892 -38.89997 -38.32819 -36.90973 -35.63143 -34.69285 -33.00333 -31.63407 -30.18425 -29.76664 -28.48189 -28.09654 -27.05113 -24.63238 -24.13944 -23.69677 -22.71278 -21.76326 -20.83239 -19.49970 -19.08324 -18.85400 -17.49933 -17.08949 -17.01040 -16.66654 -16.55375 -16.49568 -16.33615 -15.99170 -15.69950 -15.56170 -15.13060 -14.85634 -14.58086 -14.47618 -14.39487 -13.93296 -13.56936 -13.49628 -13.28511 -13.13774 -12.96911 -12.93643 -12.87470 -12.61945 -12.48722 -12.40924 -12.19626 -12.15089 -11.99945 -11.85938 -11.71418 -11.51405 -11.25666 -10.96805 -10.80035 -9.63858 -9.36755 -9.31766 -8.91486 -8.31322 -6.40159 0.29749 0.49453 1.39568 1.41412 1.50587 1.60961 2.12433 2.32912 2.41410 2.85733 2.90010 3.02490 3.10214 3.88509 3.94673 4.11179 4.14189 4.22578 4.27208 4.34421 4.40800 4.42572 4.45273 4.48417 4.51608 4.55907 4.60494 4.63567 4.66691 4.72289 4.74864 4.80177 4.81854 4.86525 5.00416 5.02498 5.10112 5.27406 5.29913 5.32970 5.36662 5.40600 5.54818 5.63116 5.95167 6.01410 6.05858 6.12616 6.20821 6.48174 6.64889 6.87085 7.25596 7.51360 8.85017 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007642 B = 0.003802 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3663.024710 B = 7362.629708 C =10494.884278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.140 3.860 4 C -0.221 4.221 5 C -0.058 4.058 6 C -0.174 4.174 7 C 0.194 3.806 8 N -0.682 5.682 9 C 0.707 3.293 10 O -0.614 6.614 11 N -0.606 5.606 12 C 0.220 3.780 13 C -0.543 4.543 14 H 0.027 0.973 15 C 0.021 3.979 16 N -0.940 5.940 17 Si 0.940 3.060 18 H -0.262 1.262 19 H -0.285 1.285 20 H -0.237 1.237 21 C 0.138 3.862 22 C -0.113 4.113 23 C 0.064 3.936 24 N -0.562 5.562 25 C 0.024 3.976 26 C 0.023 3.977 27 C -0.204 4.204 28 H 0.117 0.883 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.127 0.873 34 H 0.414 0.586 35 H 0.054 0.946 36 H 0.037 0.963 37 H 0.269 0.731 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.034 0.966 44 H 0.027 0.973 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.081 0.919 49 H 0.025 0.975 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.927 12.395 6.708 17.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.094 3.906 4 C -0.241 4.241 5 C -0.077 4.077 6 C -0.195 4.195 7 C 0.098 3.902 8 N -0.329 5.329 9 C 0.409 3.591 10 O -0.495 6.495 11 N -0.339 5.339 12 C 0.097 3.903 13 C -0.581 4.581 14 H 0.045 0.955 15 C -0.178 4.178 16 N -0.579 5.579 17 Si 0.762 3.238 18 H -0.187 1.187 19 H -0.211 1.211 20 H -0.160 1.160 21 C 0.014 3.986 22 C -0.152 4.152 23 C -0.065 4.065 24 N -0.286 5.286 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.226 4.226 28 H 0.135 0.865 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.178 0.822 32 H 0.175 0.825 33 H 0.145 0.855 34 H 0.253 0.747 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.099 0.901 49 H 0.043 0.957 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.859 12.476 6.685 17.840 hybrid contribution 0.351 -0.752 -0.378 0.912 sum -10.508 11.724 6.308 16.960 Atomic orbital electron populations 1.23387 0.76050 1.05584 1.02608 1.86052 1.23858 1.26670 1.88624 1.18689 0.91038 0.85282 0.95597 1.21463 1.01296 0.91170 1.10124 1.21125 0.93006 0.98429 0.95108 1.21261 0.94673 0.97563 1.05995 1.17442 0.81773 0.93632 0.97376 1.42780 1.05175 1.31325 1.53657 1.15877 0.82489 0.81718 0.79024 1.90789 1.64908 1.40336 1.53478 1.47135 1.03267 1.27591 1.55884 1.19580 0.92616 0.85647 0.92415 1.21488 1.34871 1.02277 0.99490 0.95475 1.25797 0.95618 0.94554 1.01833 1.70055 1.41457 1.08464 1.37974 0.85832 0.78516 0.80237 0.79208 1.18651 1.21084 1.15967 1.21253 0.97074 0.86201 0.94040 1.21784 1.00274 0.94444 0.98748 1.21977 1.00145 0.91103 0.93245 1.61967 1.16437 1.10638 1.39529 1.22430 0.96836 0.95126 0.97945 1.22427 0.90851 0.99498 0.99717 1.20117 0.93143 0.96777 1.12528 0.86484 0.91045 0.91547 0.82159 0.82500 0.85511 0.74707 0.92774 0.94540 0.92232 0.90094 0.91635 0.92723 0.91384 0.89804 0.94780 0.95444 0.90226 0.90855 0.92143 0.90072 0.95684 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -9.03 10.49 -92.36 -0.97 -10.00 16 3 C 0.14 4.12 6.68 22.49 0.15 4.27 16 4 C -0.22 -5.29 9.04 22.39 0.20 -5.09 16 5 C -0.06 -1.49 10.03 22.24 0.22 -1.27 16 6 C -0.17 -5.83 8.69 22.41 0.19 -5.63 16 7 C 0.19 7.13 6.30 38.13 0.24 7.37 16 8 N -0.68 -27.04 5.21 -317.22 -1.65 -28.69 16 9 C 0.71 30.13 8.12 179.05 1.45 31.58 16 10 O -0.61 -27.66 13.36 -3.98 -0.05 -27.71 16 11 N -0.61 -24.87 2.46 -844.18 -2.07 -26.94 16 12 C 0.22 9.41 4.03 85.63 0.35 9.76 16 13 C -0.54 -28.98 9.94 25.60 0.25 -28.72 16 14 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 15 C 0.02 1.15 5.47 84.66 0.46 1.61 16 16 N -0.94 -56.03 13.96 21.45 0.30 -55.73 16 17 Si 0.94 39.65 27.47 68.60 1.88 41.54 16 18 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 19 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 20 H -0.24 -8.94 6.54 99.48 0.65 -8.29 16 21 C 0.14 4.92 5.41 86.38 0.47 5.39 16 22 C -0.11 -3.38 5.46 30.60 0.17 -3.22 16 23 C 0.06 1.60 4.96 86.31 0.43 2.03 16 24 N -0.56 -13.01 5.02 -948.83 -4.76 -17.77 16 25 C 0.02 0.44 9.57 127.69 1.22 1.66 16 26 C 0.02 0.49 9.32 127.69 1.19 1.68 16 27 C -0.20 -7.12 9.90 22.49 0.22 -6.90 16 28 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 0.85 7.67 -2.38 -0.02 0.83 16 30 H 0.07 0.86 7.65 -2.39 -0.02 0.84 16 31 H 0.16 2.58 6.29 -2.91 -0.02 2.56 16 32 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 33 H 0.13 4.60 6.22 -2.91 -0.02 4.58 16 34 H 0.41 16.00 6.52 -92.71 -0.60 15.40 16 35 H 0.05 2.20 7.13 -2.39 -0.02 2.19 16 36 H 0.04 1.47 5.72 -2.39 -0.01 1.46 16 37 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 38 H 0.08 2.86 8.07 -2.39 -0.02 2.84 16 39 H 0.07 2.44 7.42 -2.38 -0.02 2.42 16 40 H 0.05 1.75 6.55 -2.39 -0.02 1.73 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.08 1.97 8.06 -2.39 -0.02 1.96 16 43 H 0.03 0.86 8.12 -2.38 -0.02 0.84 16 44 H 0.03 0.47 8.14 -2.38 -0.02 0.45 16 45 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 46 H 0.07 1.24 8.12 -2.38 -0.02 1.22 16 47 H 0.06 1.43 6.47 -2.39 -0.02 1.41 16 48 H 0.08 1.42 8.12 -2.39 -0.02 1.40 16 49 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 50 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -69.99 402.78 1.28 -68.71 By element: Atomic # 1 Polarization: 40.41 SS G_CDS: 0.27 Total: 40.68 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 8.34 Total: 15.93 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -8.19 Total: -129.14 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -1.02 Total: -37.71 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 1.88 Total: 41.54 kcal Total: -69.99 1.28 -68.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178367885.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.672 kcal (2) G-P(sol) polarization free energy of solvation -69.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds