Wall clock time and date at job start Tue Mar 31 2020 18:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35974 * 117.00414 * 2 1 4 4 C 1.38715 * 119.98998 * 179.97438 * 3 2 1 5 5 C 1.38097 * 120.01761 * 180.27549 * 4 3 2 6 6 C 1.38843 * 119.97995 * 359.47999 * 5 4 3 7 7 N 1.40149 * 120.01048 * 180.22962 * 6 5 4 8 8 C 1.34771 * 120.00007 * 145.22672 * 7 6 5 9 9 O 1.21597 * 120.00097 * 4.59122 * 8 7 6 10 10 N 1.34776 * 120.00273 * 184.59116 * 8 7 6 11 11 C 1.46499 * 119.99810 * 0.02562 * 10 8 7 12 12 C 1.50695 * 109.47688 * 89.99824 * 11 10 8 13 13 H 1.08007 * 119.99762 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00246 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99757 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00144 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47083 * 89.99513 * 16 14 12 18 18 H 1.48499 * 109.46921 * 209.99756 * 16 14 12 19 19 H 1.48503 * 109.47078 * 329.99534 * 16 14 12 20 20 C 1.46501 * 120.00330 * 179.97438 * 10 8 7 21 21 C 1.53002 * 109.47022 * 89.99651 * 20 10 8 22 22 C 1.53000 * 109.46761 * 179.97438 * 21 20 10 23 23 N 1.46904 * 109.46701 * 180.02562 * 22 21 20 24 24 C 1.46900 * 111.00112 * 66.04920 * 23 22 21 25 25 C 1.46908 * 110.99724 * 190.00217 * 23 22 21 26 26 C 1.38828 * 119.97131 * 0.54666 * 6 5 4 27 27 C 1.38099 * 119.98996 * 359.70234 * 26 6 5 28 28 H 1.08994 * 109.47224 * 59.99815 * 1 2 3 29 29 H 1.08996 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46782 * 299.99792 * 1 2 3 31 31 H 1.08000 * 119.99242 * 0.02562 * 4 3 2 32 32 H 1.07992 * 120.00875 * 179.72498 * 5 4 3 33 33 H 0.97004 * 120.00285 * 325.22666 * 7 6 5 34 34 H 1.09001 * 109.47061 * 209.99895 * 11 10 8 35 35 H 1.09001 * 109.46895 * 329.99737 * 11 10 8 36 36 H 0.97003 * 119.99740 * 180.02562 * 15 14 12 37 37 H 1.09004 * 109.47185 * 210.00204 * 20 10 8 38 38 H 1.09002 * 109.47160 * 330.00265 * 20 10 8 39 39 H 1.08987 * 109.47504 * 300.00356 * 21 20 10 40 40 H 1.09004 * 109.46821 * 60.00823 * 21 20 10 41 41 H 1.08994 * 109.47859 * 300.00302 * 22 21 20 42 42 H 1.09002 * 109.47188 * 60.00756 * 22 21 20 43 43 H 1.09002 * 109.46676 * 59.99796 * 24 23 22 44 44 H 1.08994 * 109.47365 * 179.97438 * 24 23 22 45 45 H 1.08993 * 109.47001 * 299.99965 * 24 23 22 46 46 H 1.08995 * 109.46639 * 60.00420 * 25 23 22 47 47 H 1.08999 * 109.46701 * 179.97438 * 25 23 22 48 48 H 1.08998 * 109.46962 * 299.99736 * 25 23 22 49 49 H 1.07997 * 120.00542 * 179.68674 * 26 6 5 50 50 H 1.07991 * 119.99445 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4316 1.2837 0.0005 5 6 4.0593 2.5138 0.0063 6 6 3.3033 3.6784 0.0006 7 7 3.9397 4.9272 0.0016 8 6 3.3947 5.9617 -0.6685 9 8 2.3102 5.8356 -1.2040 10 7 4.0516 7.1360 -0.7452 11 6 5.3583 7.2878 -0.1005 12 6 6.4451 6.9047 -1.0716 13 1 6.1882 6.5810 -2.0695 14 6 7.7675 6.9685 -0.6866 15 7 8.7159 6.6337 -1.5341 16 14 8.2120 7.5291 1.0389 17 1 8.2633 6.3527 1.9437 18 1 9.5392 8.1947 1.0166 19 1 7.1867 8.4855 1.5282 20 6 3.4594 8.2605 -1.4741 21 6 2.6038 9.0941 -0.5180 22 6 1.9859 10.2687 -1.2792 23 7 1.1649 11.0694 -0.3611 24 6 1.9974 11.7154 0.6625 25 6 0.3692 12.0620 -1.0959 26 6 1.9170 3.6054 0.0006 27 6 1.2906 2.3747 0.0001 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0195 0.3778 0.0005 32 1 5.1377 2.5699 0.0112 33 1 4.7724 5.0469 0.4845 34 1 5.4940 8.3250 0.2060 35 1 5.4088 6.6406 0.7751 36 1 9.6463 6.6782 -1.2631 37 1 4.2525 8.8829 -1.8886 38 1 2.8352 7.8808 -2.2830 39 1 1.8108 8.4718 -0.1036 40 1 3.2280 9.4739 0.2909 41 1 2.7791 10.8910 -1.6933 42 1 1.3618 9.8894 -2.0883 43 1 2.7228 12.3707 0.1802 44 1 1.3647 12.3020 1.3284 45 1 2.5226 10.9531 1.2378 46 1 -0.2892 11.5515 -1.7987 47 1 -0.2294 12.6406 -0.3924 48 1 1.0357 12.7298 -1.6417 49 1 1.3285 4.5110 0.0013 50 1 0.2121 2.3178 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178368186.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:03 Heat of formation + Delta-G solvation = -23.515891 kcal Electronic energy + Delta-G solvation = -29136.517368 eV Core-core repulsion = 25164.877003 eV Total energy + Delta-G solvation = -3971.640365 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.36727 -39.46821 -37.82321 -37.19949 -35.31705 -34.02436 -32.78729 -31.57807 -30.84446 -28.83625 -28.10454 -27.64323 -27.06189 -25.70221 -23.09291 -22.72477 -22.46442 -21.45882 -20.68305 -19.24862 -18.06393 -17.69077 -17.10082 -16.74363 -15.90844 -15.67097 -15.57198 -15.50795 -15.12339 -14.56079 -14.51531 -14.24145 -14.12837 -13.93523 -13.57499 -13.37138 -13.11818 -12.67373 -12.54539 -12.48580 -12.46990 -12.28131 -12.00861 -11.86204 -11.82823 -11.72775 -11.35382 -11.21588 -11.18135 -10.99058 -10.79658 -10.74514 -10.36454 -10.22243 -9.70907 -9.58453 -9.33132 -8.80474 -8.74740 -8.40014 -7.90073 -7.30520 -6.27999 -4.30927 1.55311 1.66704 3.10547 3.16645 3.19289 3.23520 3.38769 3.65861 3.94115 4.16112 4.19232 4.49315 4.94913 5.01297 5.03176 5.05307 5.09293 5.10237 5.19068 5.23836 5.32709 5.38290 5.48949 5.54267 5.58692 5.62994 5.65022 5.71082 5.74576 5.78434 5.83925 5.93969 6.10290 6.15357 6.22562 6.29928 6.39372 6.51168 6.58482 6.60979 6.67115 6.76549 6.98213 7.00734 7.15907 7.24669 7.34973 7.56913 7.59856 8.21231 8.51851 8.79773 9.14362 9.30983 10.84472 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007255 B = 0.003763 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3858.326565 B = 7439.442828 C =10698.312454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.095 3.905 4 C -0.131 4.131 5 C -0.111 4.111 6 C 0.146 3.854 7 N -0.681 5.681 8 C 0.712 3.288 9 O -0.600 6.600 10 N -0.603 5.603 11 C 0.211 3.789 12 C -0.544 4.544 13 H 0.080 0.920 14 C 0.077 3.923 15 N -0.887 5.887 16 Si 0.869 3.131 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.264 1.264 20 C 0.140 3.860 21 C -0.130 4.130 22 C 0.058 3.942 23 N -0.549 5.549 24 C 0.021 3.979 25 C 0.025 3.975 26 C -0.085 4.085 27 C -0.190 4.190 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.414 0.586 34 H 0.037 0.963 35 H 0.020 0.980 36 H 0.267 0.733 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.036 0.964 42 H 0.076 0.924 43 H 0.025 0.975 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.024 0.976 49 H 0.144 0.856 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.192 -0.586 5.190 15.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.050 3.950 4 C -0.151 4.151 5 C -0.132 4.132 6 C 0.050 3.950 7 N -0.330 5.330 8 C 0.414 3.586 9 O -0.480 6.480 10 N -0.336 5.336 11 C 0.090 3.910 12 C -0.583 4.583 13 H 0.098 0.902 14 C -0.127 4.127 15 N -0.524 5.524 16 Si 0.696 3.304 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.189 1.189 20 C 0.015 3.985 21 C -0.170 4.170 22 C -0.070 4.070 23 N -0.273 5.273 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.106 4.106 27 C -0.209 4.209 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.148 0.852 32 H 0.153 0.847 33 H 0.252 0.748 34 H 0.055 0.945 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.094 0.906 43 H 0.043 0.957 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.042 0.958 49 H 0.162 0.838 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.938 -1.085 4.997 15.789 hybrid contribution 1.374 1.123 0.625 1.881 sum -13.564 0.038 5.622 14.683 Atomic orbital electron populations 1.22977 0.78979 1.03369 1.01281 1.86034 1.20899 1.27233 1.89465 1.18942 0.92298 0.83932 0.99845 1.20116 0.91157 0.97849 1.05937 1.20809 1.00170 0.90349 1.01834 1.17522 0.91581 0.84362 1.01535 1.42768 1.28185 1.07967 1.54082 1.15744 0.83511 0.80407 0.78934 1.90813 1.21404 1.82946 1.52861 1.47034 1.20673 1.09984 1.55904 1.19721 0.80583 0.97594 0.93116 1.21408 0.89570 1.46456 1.00829 0.90243 1.24894 0.96241 0.94431 0.97111 1.69895 1.00342 1.47028 1.35166 0.86958 0.78689 0.79729 0.85046 1.19780 1.20787 1.18896 1.21125 0.96648 0.86866 0.93821 1.21989 0.99598 0.96266 0.99101 1.22076 0.95484 0.94626 0.94804 1.61976 1.26018 1.24028 1.15230 1.22435 0.96329 0.98575 0.95371 1.22367 0.97427 0.94485 0.98064 1.21154 0.93330 0.98073 0.98004 1.21081 0.99691 0.91864 1.08252 0.92811 0.88694 0.92887 0.85179 0.84742 0.74763 0.94487 0.96244 0.92287 0.90280 0.90513 0.90919 0.91987 0.94610 0.90586 0.95651 0.91767 0.90890 0.91384 0.91642 0.95790 0.83848 0.85676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.21 10.50 -19.66 -0.21 -4.41 16 3 C 0.09 1.38 6.69 -39.23 -0.26 1.11 16 4 C -0.13 -1.90 9.98 -39.46 -0.39 -2.30 16 5 C -0.11 -1.74 9.96 -39.41 -0.39 -2.13 16 6 C 0.15 2.56 6.30 -83.61 -0.53 2.03 16 7 N -0.68 -12.83 5.22 -14.19 -0.07 -12.90 16 8 C 0.71 14.65 8.12 -86.92 -0.71 13.95 16 9 O -0.60 -13.18 13.36 5.28 0.07 -13.11 16 10 N -0.60 -12.04 2.46 -180.80 -0.44 -12.48 16 11 C 0.21 4.48 4.03 -5.20 -0.02 4.46 16 12 C -0.54 -13.91 9.94 -34.44 -0.34 -14.25 16 13 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 14 C 0.08 2.02 5.47 -17.82 -0.10 1.93 16 15 N -0.89 -25.23 13.96 55.43 0.77 -24.46 16 16 Si 0.87 19.09 27.47 -169.99 -4.67 14.42 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 19 H -0.26 -5.48 6.54 56.52 0.37 -5.11 16 20 C 0.14 2.44 5.41 -4.04 -0.02 2.42 16 21 C -0.13 -1.96 5.46 -26.73 -0.15 -2.10 16 22 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 23 N -0.55 -6.77 5.02 -251.26 -1.26 -8.03 16 24 C 0.02 0.24 9.32 60.06 0.56 0.80 16 25 C 0.02 0.25 9.57 60.07 0.57 0.82 16 26 C -0.08 -1.43 8.69 -39.41 -0.34 -1.77 16 27 C -0.19 -2.75 9.03 -39.46 -0.36 -3.11 16 28 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 31 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 32 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 33 H 0.41 7.54 6.52 -40.82 -0.27 7.27 16 34 H 0.04 0.77 7.13 -51.93 -0.37 0.40 16 35 H 0.02 0.40 5.73 -51.93 -0.30 0.10 16 36 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 38 H 0.08 1.37 7.42 -51.93 -0.39 0.99 16 39 H 0.07 1.21 8.14 -51.94 -0.42 0.78 16 40 H 0.06 0.93 6.55 -51.93 -0.34 0.59 16 41 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 42 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 43 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 45 H 0.07 0.86 6.47 -51.93 -0.34 0.52 16 46 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 47 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 48 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 49 H 0.14 2.58 6.22 -52.49 -0.33 2.25 16 50 H 0.13 1.50 6.29 -52.49 -0.33 1.17 16 LS Contribution 402.79 15.07 6.07 6.07 Total: -1.00 -30.63 402.79 -9.34 -39.97 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -8.10 Total: 11.09 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -1.50 Total: 3.84 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -1.01 Total: -57.87 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.14 Total: -17.52 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.67 Total: 14.42 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.63 -9.34 -39.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178368186.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.451 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds