Wall clock time and date at job start Tue Mar 31 2020 18:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35974 * 117.00414 * 2 1 4 4 C 1.38715 * 119.98998 * 179.97438 * 3 2 1 5 5 C 1.38097 * 120.01761 * 180.27549 * 4 3 2 6 6 C 1.38843 * 119.97995 * 359.47999 * 5 4 3 7 7 N 1.40149 * 120.01048 * 180.22962 * 6 5 4 8 8 C 1.34771 * 120.00007 * 145.22672 * 7 6 5 9 9 O 1.21597 * 120.00097 * 4.59122 * 8 7 6 10 10 N 1.34776 * 120.00273 * 184.59116 * 8 7 6 11 11 C 1.46499 * 119.99810 * 0.02562 * 10 8 7 12 12 C 1.50695 * 109.47688 * 89.99824 * 11 10 8 13 13 H 1.08007 * 119.99762 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00246 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99757 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00144 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47083 * 89.99513 * 16 14 12 18 18 H 1.48499 * 109.46921 * 209.99756 * 16 14 12 19 19 H 1.48503 * 109.47078 * 329.99534 * 16 14 12 20 20 C 1.46501 * 120.00330 * 179.97438 * 10 8 7 21 21 C 1.53002 * 109.47022 * 89.99651 * 20 10 8 22 22 C 1.53000 * 109.46761 * 179.97438 * 21 20 10 23 23 N 1.46904 * 109.46701 * 180.02562 * 22 21 20 24 24 C 1.46900 * 111.00112 * 66.04920 * 23 22 21 25 25 C 1.46908 * 110.99724 * 190.00217 * 23 22 21 26 26 C 1.38828 * 119.97131 * 0.54666 * 6 5 4 27 27 C 1.38099 * 119.98996 * 359.70234 * 26 6 5 28 28 H 1.08994 * 109.47224 * 59.99815 * 1 2 3 29 29 H 1.08996 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46782 * 299.99792 * 1 2 3 31 31 H 1.08000 * 119.99242 * 0.02562 * 4 3 2 32 32 H 1.07992 * 120.00875 * 179.72498 * 5 4 3 33 33 H 0.97004 * 120.00285 * 325.22666 * 7 6 5 34 34 H 1.09001 * 109.47061 * 209.99895 * 11 10 8 35 35 H 1.09001 * 109.46895 * 329.99737 * 11 10 8 36 36 H 0.97003 * 119.99740 * 180.02562 * 15 14 12 37 37 H 1.09004 * 109.47185 * 210.00204 * 20 10 8 38 38 H 1.09002 * 109.47160 * 330.00265 * 20 10 8 39 39 H 1.08987 * 109.47504 * 300.00356 * 21 20 10 40 40 H 1.09004 * 109.46821 * 60.00823 * 21 20 10 41 41 H 1.08994 * 109.47859 * 300.00302 * 22 21 20 42 42 H 1.09002 * 109.47188 * 60.00756 * 22 21 20 43 43 H 1.09002 * 109.46676 * 59.99796 * 24 23 22 44 44 H 1.08994 * 109.47365 * 179.97438 * 24 23 22 45 45 H 1.08993 * 109.47001 * 299.99965 * 24 23 22 46 46 H 1.08995 * 109.46639 * 60.00420 * 25 23 22 47 47 H 1.08999 * 109.46701 * 179.97438 * 25 23 22 48 48 H 1.08998 * 109.46962 * 299.99736 * 25 23 22 49 49 H 1.07997 * 120.00542 * 179.68674 * 26 6 5 50 50 H 1.07991 * 119.99445 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4316 1.2837 0.0005 5 6 4.0593 2.5138 0.0063 6 6 3.3033 3.6784 0.0006 7 7 3.9397 4.9272 0.0016 8 6 3.3947 5.9617 -0.6685 9 8 2.3102 5.8356 -1.2040 10 7 4.0516 7.1360 -0.7452 11 6 5.3583 7.2878 -0.1005 12 6 6.4451 6.9047 -1.0716 13 1 6.1882 6.5810 -2.0695 14 6 7.7675 6.9685 -0.6866 15 7 8.7159 6.6337 -1.5341 16 14 8.2120 7.5291 1.0389 17 1 8.2633 6.3527 1.9437 18 1 9.5392 8.1947 1.0166 19 1 7.1867 8.4855 1.5282 20 6 3.4594 8.2605 -1.4741 21 6 2.6038 9.0941 -0.5180 22 6 1.9859 10.2687 -1.2792 23 7 1.1649 11.0694 -0.3611 24 6 1.9974 11.7154 0.6625 25 6 0.3692 12.0620 -1.0959 26 6 1.9170 3.6054 0.0006 27 6 1.2906 2.3747 0.0001 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0195 0.3778 0.0005 32 1 5.1377 2.5699 0.0112 33 1 4.7724 5.0469 0.4845 34 1 5.4940 8.3250 0.2060 35 1 5.4088 6.6406 0.7751 36 1 9.6463 6.6782 -1.2631 37 1 4.2525 8.8829 -1.8886 38 1 2.8352 7.8808 -2.2830 39 1 1.8108 8.4718 -0.1036 40 1 3.2280 9.4739 0.2909 41 1 2.7791 10.8910 -1.6933 42 1 1.3618 9.8894 -2.0883 43 1 2.7228 12.3707 0.1802 44 1 1.3647 12.3020 1.3284 45 1 2.5226 10.9531 1.2378 46 1 -0.2892 11.5515 -1.7987 47 1 -0.2294 12.6406 -0.3924 48 1 1.0357 12.7298 -1.6417 49 1 1.3285 4.5110 0.0013 50 1 0.2121 2.3178 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178368186.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:02 Heat of formation + Delta-G solvation = -42.958796 kcal Electronic energy + Delta-G solvation = -29137.360476 eV Core-core repulsion = 25164.877003 eV Total energy + Delta-G solvation = -3972.483473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.76959 -40.70140 -38.89560 -38.32779 -36.88919 -35.43720 -34.66762 -32.93971 -32.03772 -30.09317 -29.76337 -28.47951 -27.99416 -26.91027 -24.61448 -24.22982 -23.65215 -22.65542 -21.77589 -20.76791 -19.34274 -19.07291 -18.94775 -18.24664 -17.05542 -16.82573 -16.60138 -16.52573 -16.50104 -16.08306 -15.65940 -15.56712 -15.39646 -15.19525 -14.85937 -14.68807 -14.40422 -14.29786 -13.94485 -13.71768 -13.53547 -13.37335 -13.26263 -13.18608 -12.77120 -12.68880 -12.60219 -12.56884 -12.35410 -12.29033 -12.24927 -12.02800 -11.85240 -11.71650 -11.48656 -11.10964 -10.80123 -10.74116 -9.96223 -9.51055 -9.31116 -8.60150 -8.30509 -6.39439 0.34785 0.42709 1.40048 1.41901 1.50962 1.71895 2.15850 2.33366 2.43429 2.84958 2.91073 3.03086 3.11052 3.89108 3.93555 3.94969 4.12399 4.23301 4.27873 4.36334 4.40774 4.44189 4.44323 4.49896 4.51588 4.59397 4.61460 4.62867 4.66961 4.74305 4.76205 4.79406 4.84999 4.95490 5.00858 5.02126 5.06442 5.13457 5.26324 5.37004 5.39005 5.41433 5.53178 5.65317 5.93096 6.02665 6.08511 6.12086 6.22777 6.48729 6.65965 6.92671 7.26766 7.57306 8.85759 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007255 B = 0.003763 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3858.326565 B = 7439.442828 C =10698.312454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.100 3.900 4 C -0.133 4.133 5 C -0.112 4.112 6 C 0.115 3.885 7 N -0.679 5.679 8 C 0.705 3.295 9 O -0.619 6.619 10 N -0.608 5.608 11 C 0.221 3.779 12 C -0.543 4.543 13 H 0.027 0.973 14 C 0.022 3.978 15 N -0.940 5.940 16 Si 0.940 3.060 17 H -0.259 1.259 18 H -0.287 1.287 19 H -0.238 1.238 20 C 0.138 3.862 21 C -0.112 4.112 22 C 0.064 3.936 23 N -0.565 5.565 24 C 0.021 3.979 25 C 0.025 3.975 26 C -0.096 4.096 27 C -0.187 4.187 28 H 0.058 0.942 29 H 0.122 0.878 30 H 0.064 0.936 31 H 0.151 0.849 32 H 0.140 0.860 33 H 0.414 0.586 34 H 0.051 0.949 35 H 0.038 0.962 36 H 0.269 0.731 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.028 0.972 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.029 0.971 49 H 0.127 0.873 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.442 -0.584 7.181 17.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.054 3.946 4 C -0.152 4.152 5 C -0.133 4.133 6 C 0.021 3.979 7 N -0.328 5.328 8 C 0.407 3.593 9 O -0.501 6.501 10 N -0.341 5.341 11 C 0.098 3.902 12 C -0.581 4.581 13 H 0.045 0.955 14 C -0.178 4.178 15 N -0.580 5.580 16 Si 0.763 3.237 17 H -0.184 1.184 18 H -0.213 1.213 19 H -0.162 1.162 20 C 0.015 3.985 21 C -0.151 4.151 22 C -0.064 4.064 23 N -0.289 5.289 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.117 4.117 27 C -0.206 4.206 28 H 0.077 0.923 29 H 0.140 0.860 30 H 0.082 0.918 31 H 0.169 0.831 32 H 0.158 0.842 33 H 0.253 0.747 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.095 0.905 43 H 0.047 0.953 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.098 0.902 48 H 0.047 0.953 49 H 0.145 0.855 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.232 -1.093 6.994 17.709 hybrid contribution 1.651 0.979 -0.101 1.922 sum -14.581 -0.114 6.893 16.129 Atomic orbital electron populations 1.23326 0.76723 1.05536 1.02068 1.86038 1.23221 1.26217 1.89022 1.19058 0.92476 0.84531 0.98504 1.20381 0.91707 0.98062 1.05080 1.20912 1.00473 0.90291 1.01635 1.17783 0.92174 0.84255 1.03721 1.42716 1.28099 1.08212 1.53773 1.15930 0.83499 0.80821 0.79064 1.90787 1.22226 1.83300 1.53770 1.47112 1.20286 1.10587 1.56085 1.19559 0.79678 0.98431 0.92484 1.21494 0.91194 1.45951 0.99474 0.95470 1.25793 0.95846 0.94308 1.01811 1.70063 1.00879 1.49074 1.37938 0.85825 0.78568 0.80082 0.79255 1.18377 1.21260 1.16159 1.21227 0.96712 0.86468 0.94142 1.21772 0.98563 0.96265 0.98550 1.21964 0.95738 0.94073 0.94671 1.61964 1.26215 1.25124 1.15583 1.22460 0.96590 0.98425 0.95244 1.22421 0.97343 0.94160 0.98390 1.21089 0.93067 0.98472 0.99046 1.21278 1.01016 0.90977 1.07295 0.92302 0.85999 0.91763 0.83089 0.84194 0.74722 0.93089 0.94377 0.92237 0.90393 0.91536 0.92614 0.91686 0.94115 0.90532 0.95324 0.90195 0.91765 0.91136 0.90234 0.95265 0.85477 0.83220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.83 10.50 -93.26 -0.98 -8.81 16 3 C 0.10 2.73 6.69 22.50 0.15 2.88 16 4 C -0.13 -3.69 9.98 22.35 0.22 -3.47 16 5 C -0.11 -3.50 9.96 22.38 0.22 -3.28 16 6 C 0.12 4.10 6.30 38.10 0.24 4.34 16 7 N -0.68 -26.08 5.22 -317.06 -1.66 -27.74 16 8 C 0.70 29.76 8.12 179.06 1.45 31.22 16 9 O -0.62 -28.05 13.36 -4.02 -0.05 -28.10 16 10 N -0.61 -24.65 2.46 -844.18 -2.07 -26.73 16 11 C 0.22 9.25 4.03 85.63 0.35 9.60 16 12 C -0.54 -28.39 9.94 25.60 0.25 -28.14 16 13 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 14 C 0.02 1.15 5.47 84.65 0.46 1.61 16 15 N -0.94 -54.99 13.96 21.45 0.30 -54.69 16 16 Si 0.94 38.58 27.47 68.60 1.88 40.47 16 17 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 18 H -0.29 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.24 -8.74 6.54 99.48 0.65 -8.09 16 20 C 0.14 4.91 5.41 86.38 0.47 5.38 16 21 C -0.11 -3.35 5.46 30.60 0.17 -3.18 16 22 C 0.06 1.61 4.96 86.30 0.43 2.04 16 23 N -0.56 -13.12 5.02 -948.85 -4.76 -17.88 16 24 C 0.02 0.43 9.32 127.69 1.19 1.62 16 25 C 0.02 0.45 9.57 127.69 1.22 1.67 16 26 C -0.10 -3.26 8.69 22.38 0.19 -3.06 16 27 C -0.19 -5.20 9.03 22.35 0.20 -4.99 16 28 H 0.06 0.84 7.66 -2.39 -0.02 0.83 16 29 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 31 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 32 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 33 H 0.41 15.23 6.52 -92.71 -0.60 14.62 16 34 H 0.05 2.03 7.13 -2.39 -0.02 2.01 16 35 H 0.04 1.49 5.73 -2.39 -0.01 1.47 16 36 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 37 H 0.08 2.75 8.07 -2.38 -0.02 2.73 16 38 H 0.07 2.48 7.42 -2.39 -0.02 2.46 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 1.89 6.55 -2.38 -0.02 1.88 16 41 H 0.04 0.98 8.12 -2.39 -0.02 0.96 16 42 H 0.08 1.90 8.06 -2.39 -0.02 1.88 16 43 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16 45 H 0.06 1.41 6.47 -2.39 -0.02 1.40 16 46 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 47 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 48 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.13 4.70 6.22 -2.91 -0.02 4.68 16 50 H 0.15 3.30 6.29 -2.92 -0.02 3.28 16 Total: -1.00 -68.00 402.79 1.27 -66.73 By element: Atomic # 1 Polarization: 40.87 SS G_CDS: 0.27 Total: 41.15 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 8.34 Total: 15.61 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -8.19 Total: -127.04 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.03 Total: -36.91 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 1.88 Total: 40.47 kcal Total: -68.00 1.27 -66.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178368186.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.771 kcal (2) G-P(sol) polarization free energy of solvation -68.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds