Wall clock time and date at job start Tue Mar 31 2020 18:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35983 * 117.00112 * 2 1 4 4 C 1.38546 * 120.07956 * 359.97438 * 3 2 1 5 5 C 1.38249 * 120.01062 * 180.02562 * 4 3 2 6 6 C 1.38272 * 120.17893 * 359.95315 * 5 4 3 7 7 C 1.38201 * 120.16118 * 0.02562 * 6 5 4 8 8 C 1.38709 * 119.98497 * 0.02562 * 7 6 5 9 9 N 1.40169 * 120.08588 * 179.97438 * 8 7 6 10 10 C 1.34776 * 119.99940 * 325.31794 * 9 8 7 11 11 O 1.21593 * 120.00045 * 4.45178 * 10 9 8 12 12 N 1.34776 * 119.99961 * 184.44659 * 10 9 8 13 13 C 1.46500 * 120.00191 * 0.02562 * 12 10 9 14 14 C 1.50705 * 109.47361 * 89.99488 * 13 12 10 15 15 H 1.08002 * 119.99715 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99946 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00086 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99922 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47007 * 89.99913 * 18 16 14 20 20 H 1.48501 * 109.47121 * 209.99839 * 18 16 14 21 21 H 1.48496 * 109.47101 * 330.00135 * 18 16 14 22 22 C 1.46501 * 120.00093 * 180.02562 * 12 10 9 23 23 C 1.53001 * 109.46957 * 90.00092 * 22 12 10 24 24 C 1.52998 * 109.47014 * 180.02562 * 23 22 12 25 25 N 1.46904 * 109.47097 * 180.02562 * 24 23 22 26 26 C 1.46902 * 110.99788 * 66.04337 * 25 24 23 27 27 C 1.46899 * 111.00159 * 189.99763 * 25 24 23 28 28 H 1.09002 * 109.47293 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47631 * 300.00588 * 1 2 3 30 30 H 1.09006 * 109.46402 * 60.00735 * 1 2 3 31 31 H 1.07994 * 119.99131 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.91209 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.91840 * 180.02562 * 6 5 4 34 34 H 1.08002 * 120.00596 * 179.74260 * 7 6 5 35 35 H 0.97005 * 119.99934 * 145.32704 * 9 8 7 36 36 H 1.09004 * 109.47003 * 209.99652 * 13 12 10 37 37 H 1.08996 * 109.47021 * 329.99641 * 13 12 10 38 38 H 0.97002 * 120.00114 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47229 * 210.00470 * 22 12 10 40 40 H 1.09003 * 109.47158 * 330.00512 * 22 12 10 41 41 H 1.09002 * 109.47460 * 300.00236 * 23 22 12 42 42 H 1.09003 * 109.46844 * 60.00227 * 23 22 12 43 43 H 1.09002 * 109.47024 * 300.00287 * 24 23 22 44 44 H 1.09003 * 109.47307 * 60.00294 * 24 23 22 45 45 H 1.09001 * 109.46960 * 60.00625 * 26 25 24 46 46 H 1.09001 * 109.46967 * 179.97438 * 26 25 24 47 47 H 1.08996 * 109.47169 * 299.99981 * 26 25 24 48 48 H 1.09003 * 109.46816 * 60.00133 * 27 25 24 49 49 H 1.08997 * 109.47216 * 180.02562 * 27 25 24 50 50 H 1.08999 * 109.47247 * 300.00549 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2934 2.3746 -0.0005 5 6 1.9226 3.6057 -0.0011 6 6 3.3033 3.6806 -0.0001 7 6 4.0614 2.5251 0.0009 8 6 3.4372 1.2864 0.0004 9 7 4.2041 0.1131 0.0008 10 6 5.3767 0.0743 -0.6625 11 8 5.8086 1.0794 -1.1932 12 7 6.0705 -1.0787 -0.7376 13 6 5.5500 -2.2899 -0.0985 14 6 4.6836 -3.0412 -1.0764 15 1 4.5360 -2.6552 -2.0743 16 6 4.0796 -4.2211 -0.6972 17 7 4.2590 -4.6907 0.5181 18 14 3.0052 -5.1519 -1.9090 19 1 3.8397 -6.1138 -2.6730 20 1 1.9502 -5.8904 -1.1695 21 1 2.3717 -4.1916 -2.8480 22 6 7.3454 -1.1209 -1.4581 23 6 8.4874 -0.7945 -0.4936 24 6 9.8187 -0.8379 -1.2463 25 7 10.9152 -0.5251 -0.3201 26 6 11.0566 -1.5718 0.7010 27 6 12.1764 -0.3240 -1.0460 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 0.2149 2.3194 -0.0014 32 1 1.3341 4.5113 -0.0019 33 1 3.7904 4.6446 -0.0001 34 1 5.1397 2.5866 -0.0026 35 1 3.8908 -0.6709 0.4784 36 1 6.3813 -2.9231 0.2114 37 1 4.9579 -2.0144 0.7742 38 1 3.8344 -5.5211 0.7848 39 1 7.4948 -2.1172 -1.8743 40 1 7.3310 -0.3884 -2.2652 41 1 8.3380 0.2018 -0.0775 42 1 8.5018 -1.5270 0.3135 43 1 9.9683 -1.8340 -1.6627 44 1 9.8040 -0.1052 -2.0532 45 1 11.2692 -2.5251 0.2170 46 1 11.8756 -1.3154 1.3731 47 1 10.1305 -1.6516 1.2701 48 1 12.0642 0.5032 -1.7469 49 1 12.9714 -0.0944 -0.3366 50 1 12.4294 -1.2321 -1.5933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178368227.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:06 Heat of formation + Delta-G solvation = -26.868286 kcal Electronic energy + Delta-G solvation = -29706.174406 eV Core-core repulsion = 25734.388670 eV Total energy + Delta-G solvation = -3971.785736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.37188 -39.14210 -37.64123 -37.00512 -35.24261 -34.21301 -32.79794 -31.47963 -29.88302 -29.09813 -27.59450 -27.37816 -27.00586 -25.68549 -23.12509 -22.95061 -21.99866 -21.61003 -20.58622 -19.10114 -18.14687 -17.26912 -16.75991 -16.37153 -15.72570 -15.56978 -15.44311 -15.35816 -14.96772 -14.64830 -14.52812 -14.36451 -14.05305 -13.91180 -13.54773 -13.24044 -13.03450 -12.59791 -12.38453 -12.30548 -12.09115 -11.96730 -11.75588 -11.60348 -11.58416 -11.39164 -11.19657 -11.08873 -10.99981 -10.93438 -10.87679 -10.73146 -10.27479 -10.06172 -9.85015 -9.71704 -9.26369 -8.57029 -8.31547 -8.28919 -7.79996 -7.28833 -6.18247 -4.25476 1.62317 1.70490 3.22580 3.29427 3.31187 3.37326 3.54493 3.77740 4.02390 4.24690 4.33109 4.68379 5.02969 5.12067 5.15016 5.16089 5.18303 5.27847 5.29993 5.31974 5.41003 5.46346 5.58671 5.64500 5.67450 5.69482 5.74098 5.80493 5.81297 5.88737 5.94175 6.04716 6.14065 6.20740 6.43736 6.50216 6.54296 6.66210 6.75631 6.79715 6.98099 7.06492 7.09214 7.12471 7.24773 7.40032 7.73190 7.77398 7.82583 8.04238 8.60056 8.85952 9.30316 9.43781 10.88067 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007624 B = 0.004310 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3671.540624 B = 6495.486941 C = 9642.008806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.306 6.306 3 C 0.095 3.905 4 C -0.195 4.195 5 C -0.112 4.112 6 C -0.141 4.141 7 C -0.091 4.091 8 C 0.155 3.845 9 N -0.674 5.674 10 C 0.710 3.290 11 O -0.606 6.606 12 N -0.608 5.608 13 C 0.241 3.759 14 C -0.535 4.535 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.892 5.892 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.141 3.859 23 C -0.130 4.130 24 C 0.059 3.941 25 N -0.548 5.548 26 C 0.021 3.979 27 C 0.025 3.975 28 H 0.098 0.902 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.148 0.852 35 H 0.420 0.580 36 H 0.039 0.961 37 H 0.029 0.971 38 H 0.265 0.735 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.074 0.926 45 H 0.025 0.975 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.064 0.936 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.829 9.869 0.777 10.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.219 6.219 3 C 0.047 3.953 4 C -0.214 4.214 5 C -0.131 4.131 6 C -0.159 4.159 7 C -0.112 4.112 8 C 0.058 3.942 9 N -0.323 5.323 10 C 0.412 3.588 11 O -0.487 6.487 12 N -0.341 5.341 13 C 0.120 3.880 14 C -0.574 4.574 15 H 0.079 0.921 16 C -0.136 4.136 17 N -0.530 5.530 18 Si 0.724 3.276 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 C 0.016 3.984 23 C -0.169 4.169 24 C -0.069 4.069 25 N -0.272 5.272 26 C -0.127 4.127 27 C -0.123 4.123 28 H 0.117 0.883 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.166 0.834 35 H 0.260 0.740 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.093 0.907 45 H 0.043 0.957 46 H 0.082 0.918 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.112 10.533 0.748 10.769 hybrid contribution -0.934 -1.837 -0.789 2.207 sum 1.178 8.696 -0.041 8.776 Atomic orbital electron populations 1.23000 0.78874 1.03840 1.00692 1.86195 1.20876 1.26053 1.88819 1.18883 0.90755 0.85036 1.00636 1.20953 0.99464 0.91898 1.09078 1.20789 0.94646 0.96556 1.01087 1.20915 0.93567 0.98004 1.03463 1.21266 1.01643 0.89720 0.98595 1.16987 0.86481 0.87171 1.03574 1.42681 1.20957 1.14428 1.54217 1.15772 0.80133 0.83957 0.78917 1.90790 1.70689 1.33923 1.53333 1.47339 1.21202 1.09440 1.56129 1.19334 0.94890 0.80961 0.92775 1.21499 1.29605 1.06860 0.99412 0.92076 1.24918 0.96328 0.97086 0.95314 1.69921 1.43954 1.21454 1.17688 0.86511 0.80195 0.79796 0.81075 1.20615 1.21105 1.19773 1.21081 0.81444 1.02000 0.93881 1.21982 0.92840 1.02890 0.99184 1.22077 0.90710 0.99440 0.94696 1.61975 1.05035 1.44926 1.15292 1.22438 1.02657 0.92245 0.95358 1.22363 0.91594 1.00243 0.98123 0.88339 0.93029 0.93018 0.85637 0.86341 0.86071 0.83412 0.74034 0.94313 0.95291 0.92566 0.90560 0.90875 0.91005 0.91797 0.94721 0.90729 0.95680 0.91813 0.90730 0.91446 0.91671 0.95875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.31 -5.37 10.06 -19.69 -0.20 -5.57 16 3 C 0.09 1.63 6.70 -39.08 -0.26 1.37 16 4 C -0.19 -2.74 9.04 -39.46 -0.36 -3.10 16 5 C -0.11 -1.46 10.04 -39.56 -0.40 -1.86 16 6 C -0.14 -2.01 10.04 -39.58 -0.40 -2.41 16 7 C -0.09 -1.60 8.70 -39.42 -0.34 -1.94 16 8 C 0.15 2.95 6.32 -83.48 -0.53 2.42 16 9 N -0.67 -14.03 5.07 -14.10 -0.07 -14.10 16 10 C 0.71 15.57 8.13 -86.92 -0.71 14.87 16 11 O -0.61 -13.87 13.34 5.28 0.07 -13.80 16 12 N -0.61 -12.97 2.46 -180.79 -0.44 -13.41 16 13 C 0.24 5.68 4.97 -5.19 -0.03 5.66 16 14 C -0.54 -13.96 9.39 -34.44 -0.32 -14.28 16 15 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 16 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -24.35 13.29 55.43 0.74 -23.61 16 18 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.14 2.59 5.41 -4.04 -0.02 2.57 16 23 C -0.13 -2.10 5.46 -26.73 -0.15 -2.24 16 24 C 0.06 0.81 4.96 -3.82 -0.02 0.79 16 25 N -0.55 -7.19 5.02 -251.25 -1.26 -8.45 16 26 C 0.02 0.26 9.32 60.07 0.56 0.82 16 27 C 0.03 0.27 9.57 60.06 0.57 0.84 16 28 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 30 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 31 H 0.13 1.42 6.30 -52.49 -0.33 1.09 16 32 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 33 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.15 2.76 6.19 -52.49 -0.32 2.44 16 35 H 0.42 9.01 6.26 -40.82 -0.26 8.76 16 36 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 37 H 0.03 0.71 6.30 -51.93 -0.33 0.39 16 38 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 40 H 0.07 1.36 7.42 -51.93 -0.39 0.97 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.06 1.06 6.55 -51.93 -0.34 0.72 16 43 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 44 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 45 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.06 0.67 8.12 -51.93 -0.42 0.24 16 47 H 0.07 0.96 6.47 -51.93 -0.34 0.62 16 48 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 49 H 0.06 0.61 8.12 -51.93 -0.42 0.18 16 50 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 405.71 15.07 6.11 6.11 Total: -1.00 -30.13 405.71 -9.69 -39.83 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -8.12 Total: 10.75 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -1.50 Total: 6.54 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -1.04 Total: -59.57 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.13 Total: -19.37 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.13 -9.69 -39.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178368227.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.957 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds