Wall clock time and date at job start Tue Mar 31 2020 18:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35983 * 117.00112 * 2 1 4 4 C 1.38546 * 120.07956 * 359.97438 * 3 2 1 5 5 C 1.38249 * 120.01062 * 180.02562 * 4 3 2 6 6 C 1.38272 * 120.17893 * 359.95315 * 5 4 3 7 7 C 1.38201 * 120.16118 * 0.02562 * 6 5 4 8 8 C 1.38709 * 119.98497 * 0.02562 * 7 6 5 9 9 N 1.40169 * 120.08588 * 179.97438 * 8 7 6 10 10 C 1.34776 * 119.99940 * 325.31794 * 9 8 7 11 11 O 1.21593 * 120.00045 * 4.45178 * 10 9 8 12 12 N 1.34776 * 119.99961 * 184.44659 * 10 9 8 13 13 C 1.46500 * 120.00191 * 0.02562 * 12 10 9 14 14 C 1.50705 * 109.47361 * 89.99488 * 13 12 10 15 15 H 1.08002 * 119.99715 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99946 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00086 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99922 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47007 * 89.99913 * 18 16 14 20 20 H 1.48501 * 109.47121 * 209.99839 * 18 16 14 21 21 H 1.48496 * 109.47101 * 330.00135 * 18 16 14 22 22 C 1.46501 * 120.00093 * 180.02562 * 12 10 9 23 23 C 1.53001 * 109.46957 * 90.00092 * 22 12 10 24 24 C 1.52998 * 109.47014 * 180.02562 * 23 22 12 25 25 N 1.46904 * 109.47097 * 180.02562 * 24 23 22 26 26 C 1.46902 * 110.99788 * 66.04337 * 25 24 23 27 27 C 1.46899 * 111.00159 * 189.99763 * 25 24 23 28 28 H 1.09002 * 109.47293 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47631 * 300.00588 * 1 2 3 30 30 H 1.09006 * 109.46402 * 60.00735 * 1 2 3 31 31 H 1.07994 * 119.99131 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.91209 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.91840 * 180.02562 * 6 5 4 34 34 H 1.08002 * 120.00596 * 179.74260 * 7 6 5 35 35 H 0.97005 * 119.99934 * 145.32704 * 9 8 7 36 36 H 1.09004 * 109.47003 * 209.99652 * 13 12 10 37 37 H 1.08996 * 109.47021 * 329.99641 * 13 12 10 38 38 H 0.97002 * 120.00114 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47229 * 210.00470 * 22 12 10 40 40 H 1.09003 * 109.47158 * 330.00512 * 22 12 10 41 41 H 1.09002 * 109.47460 * 300.00236 * 23 22 12 42 42 H 1.09003 * 109.46844 * 60.00227 * 23 22 12 43 43 H 1.09002 * 109.47024 * 300.00287 * 24 23 22 44 44 H 1.09003 * 109.47307 * 60.00294 * 24 23 22 45 45 H 1.09001 * 109.46960 * 60.00625 * 26 25 24 46 46 H 1.09001 * 109.46967 * 179.97438 * 26 25 24 47 47 H 1.08996 * 109.47169 * 299.99981 * 26 25 24 48 48 H 1.09003 * 109.46816 * 60.00133 * 27 25 24 49 49 H 1.08997 * 109.47216 * 180.02562 * 27 25 24 50 50 H 1.08999 * 109.47247 * 300.00549 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2934 2.3746 -0.0005 5 6 1.9226 3.6057 -0.0011 6 6 3.3033 3.6806 -0.0001 7 6 4.0614 2.5251 0.0009 8 6 3.4372 1.2864 0.0004 9 7 4.2041 0.1131 0.0008 10 6 5.3767 0.0743 -0.6625 11 8 5.8086 1.0794 -1.1932 12 7 6.0705 -1.0787 -0.7376 13 6 5.5500 -2.2899 -0.0985 14 6 4.6836 -3.0412 -1.0764 15 1 4.5360 -2.6552 -2.0743 16 6 4.0796 -4.2211 -0.6972 17 7 4.2590 -4.6907 0.5181 18 14 3.0052 -5.1519 -1.9090 19 1 3.8397 -6.1138 -2.6730 20 1 1.9502 -5.8904 -1.1695 21 1 2.3717 -4.1916 -2.8480 22 6 7.3454 -1.1209 -1.4581 23 6 8.4874 -0.7945 -0.4936 24 6 9.8187 -0.8379 -1.2463 25 7 10.9152 -0.5251 -0.3201 26 6 11.0566 -1.5718 0.7010 27 6 12.1764 -0.3240 -1.0460 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 0.2149 2.3194 -0.0014 32 1 1.3341 4.5113 -0.0019 33 1 3.7904 4.6446 -0.0001 34 1 5.1397 2.5866 -0.0026 35 1 3.8908 -0.6709 0.4784 36 1 6.3813 -2.9231 0.2114 37 1 4.9579 -2.0144 0.7742 38 1 3.8344 -5.5211 0.7848 39 1 7.4948 -2.1172 -1.8743 40 1 7.3310 -0.3884 -2.2652 41 1 8.3380 0.2018 -0.0775 42 1 8.5018 -1.5270 0.3135 43 1 9.9683 -1.8340 -1.6627 44 1 9.8040 -0.1052 -2.0532 45 1 11.2692 -2.5251 0.2170 46 1 11.8756 -1.3154 1.3731 47 1 10.1305 -1.6516 1.2701 48 1 12.0642 0.5032 -1.7469 49 1 12.9714 -0.0944 -0.3366 50 1 12.4294 -1.2321 -1.5933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178368227.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:05 Heat of formation + Delta-G solvation = -45.122953 kcal Electronic energy + Delta-G solvation = -29706.965988 eV Core-core repulsion = 25734.388670 eV Total energy + Delta-G solvation = -3972.577318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.81271 -40.57008 -38.76374 -38.21572 -36.87610 -35.75881 -34.70684 -32.92589 -31.07692 -30.37429 -29.26946 -28.48044 -28.05454 -27.02910 -25.01623 -24.25638 -23.22073 -22.85691 -21.77472 -20.69888 -19.53569 -18.78707 -18.52607 -18.03821 -16.99316 -16.85352 -16.64799 -16.51170 -16.41042 -16.25480 -15.83227 -15.54790 -15.39259 -15.18799 -14.81812 -14.60559 -14.53245 -14.29390 -13.74492 -13.49023 -13.33824 -13.20316 -13.17115 -12.99826 -12.75616 -12.64683 -12.59272 -12.53834 -12.41604 -12.31385 -12.08946 -12.07875 -11.95642 -11.73266 -11.49271 -11.28908 -10.92121 -10.60712 -9.63075 -9.41535 -9.31100 -8.68197 -8.21364 -6.36538 0.39572 0.50350 1.38463 1.40152 1.50314 1.78536 2.19421 2.38401 2.42044 2.90935 2.97044 3.08118 3.13861 3.93121 3.96397 4.07308 4.12146 4.23830 4.29962 4.37222 4.41701 4.42318 4.45803 4.50859 4.54304 4.61996 4.63629 4.67341 4.73549 4.75484 4.80338 4.83170 4.93346 5.00844 5.01824 5.10133 5.12429 5.25254 5.29365 5.38210 5.60380 5.61667 5.69685 5.78713 5.96179 6.01725 6.04482 6.11934 6.14865 6.53924 6.65872 6.98434 7.35129 7.62346 8.83299 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007624 B = 0.004310 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3671.540624 B = 6495.486941 C = 9642.008806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.342 6.342 3 C 0.081 3.919 4 C -0.188 4.188 5 C -0.095 4.095 6 C -0.139 4.139 7 C -0.107 4.107 8 C 0.110 3.890 9 N -0.676 5.676 10 C 0.704 3.296 11 O -0.621 6.621 12 N -0.612 5.612 13 C 0.258 3.742 14 C -0.544 4.544 15 H 0.046 0.954 16 C 0.026 3.974 17 N -0.917 5.917 18 Si 0.956 3.044 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.140 3.860 23 C -0.113 4.113 24 C 0.067 3.933 25 N -0.565 5.565 26 C 0.022 3.978 27 C 0.025 3.975 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.150 0.850 34 H 0.126 0.874 35 H 0.412 0.588 36 H 0.027 0.973 37 H 0.017 0.983 38 H 0.268 0.732 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.040 0.960 44 H 0.080 0.920 45 H 0.028 0.972 46 H 0.081 0.919 47 H 0.058 0.942 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 11.133 0.264 11.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.256 6.256 3 C 0.034 3.966 4 C -0.207 4.207 5 C -0.114 4.114 6 C -0.158 4.158 7 C -0.128 4.128 8 C 0.015 3.985 9 N -0.324 5.324 10 C 0.406 3.594 11 O -0.503 6.503 12 N -0.345 5.345 13 C 0.137 3.863 14 C -0.583 4.583 15 H 0.064 0.936 16 C -0.175 4.175 17 N -0.556 5.556 18 Si 0.782 3.218 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.202 1.202 22 C 0.016 3.984 23 C -0.152 4.152 24 C -0.062 4.062 25 N -0.289 5.289 26 C -0.126 4.126 27 C -0.123 4.123 28 H 0.122 0.878 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.177 0.823 32 H 0.180 0.820 33 H 0.167 0.833 34 H 0.144 0.856 35 H 0.250 0.750 36 H 0.045 0.955 37 H 0.035 0.965 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.047 0.953 46 H 0.099 0.901 47 H 0.077 0.923 48 H 0.090 0.910 49 H 0.098 0.902 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.955 11.823 0.234 11.864 hybrid contribution -0.643 -2.130 -0.598 2.303 sum 0.312 9.693 -0.363 9.705 Atomic orbital electron populations 1.23298 0.76475 1.04939 1.02562 1.86142 1.23564 1.26834 1.89043 1.19092 0.90316 0.86137 1.01076 1.21378 1.00998 0.91018 1.07334 1.21300 0.94268 0.97799 0.98039 1.21256 0.94396 0.97880 1.02268 1.21220 1.00971 0.90640 0.99926 1.17403 0.87609 0.86848 1.06680 1.42645 1.20766 1.15005 1.53949 1.15931 0.80581 0.83829 0.79078 1.90758 1.71209 1.34213 1.54169 1.47363 1.22171 1.08665 1.56308 1.18957 0.93899 0.81319 0.92089 1.21593 1.30250 1.07372 0.99038 0.93577 1.25589 0.97317 0.97757 0.96798 1.70003 1.44696 1.21897 1.18967 0.85588 0.78748 0.78483 0.79020 1.19849 1.20247 1.20208 1.21208 0.81062 1.01968 0.94173 1.21769 0.93585 1.01291 0.98553 1.21951 0.89699 0.99990 0.94552 1.61955 1.05955 1.45372 1.15660 1.22441 1.02549 0.92298 0.95337 1.22424 0.90596 1.00750 0.98486 0.87847 0.90722 0.91390 0.82342 0.81960 0.83278 0.85643 0.74987 0.95461 0.96518 0.92261 0.90408 0.91138 0.92912 0.92539 0.94132 0.90167 0.95329 0.90058 0.92272 0.90951 0.90232 0.95220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.81 113.37 1.11 1.61 16 2 O -0.34 -12.04 10.06 -93.35 -0.94 -12.97 16 3 C 0.08 2.78 6.70 22.59 0.15 2.93 16 4 C -0.19 -4.77 9.04 22.35 0.20 -4.57 16 5 C -0.10 -2.14 10.04 22.28 0.22 -1.92 16 6 C -0.14 -3.72 10.04 22.27 0.22 -3.49 16 7 C -0.11 -3.81 8.70 22.37 0.19 -3.62 16 8 C 0.11 4.33 6.32 38.17 0.24 4.57 16 9 N -0.68 -29.82 5.07 -316.79 -1.61 -31.43 16 10 C 0.70 32.63 8.13 179.05 1.46 34.09 16 11 O -0.62 -29.85 13.34 -4.01 -0.05 -29.91 16 12 N -0.61 -27.53 2.46 -844.17 -2.07 -29.60 16 13 C 0.26 12.83 4.97 85.63 0.43 13.26 16 14 C -0.54 -29.25 9.39 25.60 0.24 -29.01 16 15 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 16 C 0.03 1.39 5.46 84.65 0.46 1.86 16 17 N -0.92 -50.75 13.29 21.45 0.28 -50.47 16 18 Si 0.96 42.76 29.54 68.60 2.03 44.78 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 C 0.14 5.37 5.41 86.38 0.47 5.84 16 23 C -0.11 -3.80 5.46 30.59 0.17 -3.63 16 24 C 0.07 1.83 4.96 86.30 0.43 2.26 16 25 N -0.57 -14.48 5.02 -948.83 -4.76 -19.25 16 26 C 0.02 0.52 9.32 127.69 1.19 1.71 16 27 C 0.03 0.49 9.57 127.69 1.22 1.71 16 28 H 0.10 2.22 8.14 -2.39 -0.02 2.21 16 29 H 0.07 1.34 7.66 -2.39 -0.02 1.33 16 30 H 0.07 1.32 7.66 -2.38 -0.02 1.30 16 31 H 0.16 2.89 6.30 -2.91 -0.02 2.87 16 32 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 34 H 0.13 4.96 6.19 -2.91 -0.02 4.94 16 35 H 0.41 18.95 6.26 -92.70 -0.58 18.37 16 36 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 37 H 0.02 0.88 6.30 -2.39 -0.02 0.86 16 38 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 39 H 0.08 2.93 8.07 -2.39 -0.02 2.91 16 40 H 0.07 2.73 7.42 -2.39 -0.02 2.71 16 41 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.06 1.97 6.55 -2.39 -0.02 1.95 16 43 H 0.04 1.07 8.12 -2.39 -0.02 1.05 16 44 H 0.08 2.11 8.06 -2.39 -0.02 2.09 16 45 H 0.03 0.64 8.14 -2.39 -0.02 0.63 16 46 H 0.08 1.61 8.12 -2.39 -0.02 1.59 16 47 H 0.06 1.56 6.47 -2.39 -0.02 1.54 16 48 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 49 H 0.08 1.32 8.12 -2.39 -0.02 1.30 16 50 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -67.12 405.71 1.63 -65.48 By element: Atomic # 1 Polarization: 39.42 SS G_CDS: 0.35 Total: 39.77 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: 8.41 Total: 23.59 kcal Atomic # 7 Polarization: -122.59 SS G_CDS: -8.16 Total: -130.75 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -0.99 Total: -42.88 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -67.12 1.63 -65.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178368227.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.358 kcal (2) G-P(sol) polarization free energy of solvation -67.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds