Wall clock time and date at job start Tue Mar 31 2020 18:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 119.99872 * 2 1 4 4 C 1.50694 * 109.47254 * 269.99574 * 3 2 1 5 5 H 1.08003 * 119.99799 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00272 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99909 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00129 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47312 * 90.00285 * 8 6 4 10 10 H 1.48502 * 109.47055 * 210.00183 * 8 6 4 11 11 H 1.48497 * 109.47079 * 330.00162 * 8 6 4 12 12 C 1.34770 * 119.99800 * 179.97438 * 2 1 3 13 13 O 1.21288 * 119.99881 * 184.80612 * 12 2 1 14 14 C 1.50704 * 120.00332 * 4.80297 * 12 2 1 15 15 H 1.09001 * 109.46853 * 309.87413 * 14 12 2 16 16 C 1.53004 * 109.47072 * 69.86584 * 14 12 2 17 17 C 1.52992 * 109.47365 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.46997 * 300.00243 * 17 16 14 19 19 C 1.53001 * 109.47045 * 60.00185 * 18 17 16 20 20 H 1.08996 * 109.47496 * 60.00000 * 19 18 17 21 21 C 1.50702 * 109.46777 * 180.02562 * 19 18 17 22 22 O 1.21282 * 120.00150 * 120.00146 * 21 19 18 23 23 N 1.34777 * 119.99918 * 299.99228 * 21 19 18 24 24 C 1.46493 * 119.99946 * 0.02562 * 23 21 19 25 25 C 1.46504 * 120.00015 * 180.02562 * 23 21 19 26 26 C 1.52995 * 109.47235 * 90.00064 * 25 23 21 27 27 C 1.47198 * 109.47521 * 180.02562 * 26 25 23 28 28 N 9.99574 * 116.33668 * 169.29652 * 13 1 2 29 29 C 1.52996 * 109.47509 * 189.86667 * 14 12 2 30 30 H 1.09002 * 109.47047 * 263.31429 * 1 2 3 31 31 H 1.09004 * 109.47119 * 23.31190 * 1 2 3 32 32 H 1.08997 * 109.47224 * 143.31385 * 1 2 3 33 33 H 1.09005 * 109.47192 * 30.00157 * 3 2 1 34 34 H 1.09004 * 109.46872 * 149.99687 * 3 2 1 35 35 H 0.96996 * 120.00220 * 180.02562 * 7 6 4 36 36 H 1.09008 * 109.46569 * 59.99989 * 16 14 12 37 37 H 1.08997 * 109.46815 * 300.00536 * 16 14 12 38 38 H 1.09005 * 109.47240 * 59.99839 * 17 16 14 39 39 H 1.09000 * 109.47248 * 180.02562 * 17 16 14 40 40 H 1.09004 * 109.46688 * 179.97438 * 18 17 16 41 41 H 1.08996 * 109.46974 * 299.99865 * 18 17 16 42 42 H 1.09003 * 109.47241 * 89.99986 * 24 23 21 43 43 H 1.09002 * 109.47156 * 209.99278 * 24 23 21 44 44 H 1.08993 * 109.47369 * 329.99728 * 24 23 21 45 45 H 1.08999 * 109.46978 * 210.00251 * 25 23 21 46 46 H 1.09003 * 109.46749 * 330.00116 * 25 23 21 47 47 H 1.09007 * 109.47170 * 300.00227 * 26 25 23 48 48 H 1.09002 * 109.47264 * 59.99781 * 26 25 23 49 49 H 1.08998 * 109.47306 * 300.00619 * 29 14 12 50 50 H 1.09000 * 109.46884 * 60.00114 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4207 5 1 2.0975 1.0961 -2.2416 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6731 8 14 3.4368 3.4175 -3.4339 9 1 2.3065 4.2601 -3.9003 10 1 4.6969 4.2008 -3.4965 11 1 3.5542 2.2205 -4.3049 12 6 2.1388 -1.1672 0.0005 13 8 3.3485 -1.1690 0.0885 14 6 1.3893 -2.4701 -0.1082 15 1 0.5818 -2.4868 0.6238 16 6 0.8046 -2.6062 -1.5155 17 6 0.0431 -3.9286 -1.6257 18 6 0.9997 -5.0919 -1.3561 19 6 1.5843 -4.9558 0.0512 20 1 0.7769 -4.9722 0.7833 21 6 2.5269 -6.1013 0.3165 22 8 3.6926 -5.8814 0.5691 23 7 2.0745 -7.3701 0.2732 24 6 0.6667 -7.6358 -0.0322 25 6 2.9908 -8.4837 0.5317 26 6 2.9925 -8.8062 2.0272 27 6 3.9135 -9.9246 2.2870 28 7 4.6253 -10.7887 2.4856 29 6 2.3462 -3.6330 0.1612 30 1 -0.3633 -0.1196 1.0207 31 1 -0.3633 0.9438 -0.4067 32 1 -0.3633 -0.8241 -0.6139 33 1 1.6084 2.0284 0.5139 34 1 3.1499 1.1384 0.5139 35 1 4.0294 4.4444 -0.8503 36 1 1.6121 -2.5893 -2.2476 37 1 0.1229 -1.7777 -1.7074 38 1 -0.7643 -3.9451 -0.8936 39 1 -0.3730 -4.0258 -2.6285 40 1 0.4570 -6.0340 -1.4342 41 1 1.8071 -5.0755 -2.0881 42 1 0.5435 -7.7481 -1.1094 43 1 0.3534 -8.5528 0.4668 44 1 0.0556 -6.8042 0.3186 45 1 2.6647 -9.3600 -0.0286 46 1 3.9973 -8.2061 0.2187 47 1 3.3185 -7.9298 2.5876 48 1 1.9860 -9.0837 2.3403 49 1 3.1537 -3.6162 -0.5708 50 1 2.7628 -3.5361 1.1638 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181420366.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:33 Heat of formation + Delta-G solvation = -50.291900 kcal Electronic energy + Delta-G solvation = -29442.260082 eV Core-core repulsion = 25469.458622 eV Total energy + Delta-G solvation = -3972.801460 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.84524 -39.38979 -37.47160 -36.93722 -36.03615 -34.80466 -32.90466 -32.43752 -30.85552 -30.82028 -27.73571 -27.35586 -25.85836 -25.36593 -23.87504 -22.82072 -22.04433 -20.30462 -19.39441 -18.45575 -18.15367 -17.20211 -16.62020 -16.47034 -15.99309 -15.63504 -15.61015 -15.25711 -14.99447 -14.68955 -14.29666 -14.08119 -13.94364 -13.78425 -13.60695 -13.22982 -13.04093 -13.02498 -12.65825 -12.57761 -12.43932 -12.29789 -12.22626 -12.08269 -11.92595 -11.86083 -11.47167 -11.36312 -11.19943 -11.06605 -10.92887 -10.65030 -10.54505 -10.47079 -10.31930 -10.12304 -9.78302 -9.59161 -9.15546 -8.73528 -8.41759 -7.57788 -6.02269 -4.07118 2.18741 2.38693 2.41111 2.62613 3.30431 3.37345 3.40375 3.48641 3.64591 3.97921 4.15869 4.44174 4.46808 4.47656 4.57455 4.62107 4.64541 4.83600 4.89589 4.97947 5.05676 5.15638 5.17697 5.23503 5.25724 5.29926 5.33110 5.38854 5.41301 5.50298 5.61165 5.68387 5.85125 5.90096 5.93533 5.95385 6.02471 6.11344 6.17979 6.29669 6.45136 6.58317 6.94995 7.10505 7.14931 7.49477 7.59314 7.91348 7.94671 8.26147 8.48221 8.93079 9.16367 9.58014 11.05711 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.002315 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.931360 B =12090.556019 C =12591.285341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.508 3.492 13 O -0.539 6.539 14 C -0.104 4.104 15 H 0.086 0.914 16 C -0.119 4.119 17 C -0.112 4.112 18 C -0.123 4.123 19 C -0.103 4.103 20 H 0.098 0.902 21 C 0.519 3.481 22 O -0.522 6.522 23 N -0.622 5.622 24 C 0.073 3.927 25 C 0.120 3.880 26 C -0.043 4.043 27 C 0.210 3.790 28 N -0.434 5.434 29 C -0.078 4.078 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.114 0.886 48 H 0.110 0.890 49 H 0.080 0.920 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.739 -23.573 1.388 27.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.335 5.335 3 C 0.124 3.876 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.295 3.705 13 O -0.416 6.416 14 C -0.126 4.126 15 H 0.104 0.896 16 C -0.156 4.156 17 C -0.150 4.150 18 C -0.161 4.161 19 C -0.124 4.124 20 H 0.116 0.884 21 C 0.307 3.693 22 O -0.396 6.396 23 N -0.356 5.356 24 C -0.069 4.069 25 C -0.005 4.005 26 C -0.085 4.085 27 C -0.108 4.108 28 N -0.111 5.111 29 C -0.116 4.116 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.112 0.888 47 H 0.132 0.868 48 H 0.128 0.872 49 H 0.099 0.901 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.289 -24.527 1.913 27.500 hybrid contribution -0.284 0.798 -0.973 1.290 sum -12.573 -23.729 0.940 26.871 Atomic orbital electron populations 1.21838 0.81763 1.03115 1.00125 1.48113 1.06004 1.07817 1.71578 1.19287 0.92681 0.78178 0.97405 1.21434 1.36440 1.06208 0.92308 0.92495 1.24949 0.95415 0.96475 0.97379 1.69934 1.38424 1.14287 1.30697 0.86505 0.77668 0.78575 0.84719 1.20679 1.21099 1.19914 1.20252 0.87947 0.84958 0.77380 1.90680 1.14190 1.87147 1.49615 1.21302 0.98646 0.93887 0.98736 0.89567 1.21688 1.00471 0.97704 0.95777 1.21509 0.97589 0.94014 1.01880 1.21837 0.99750 0.99494 0.94980 1.21375 0.97877 0.93786 0.99359 0.88409 1.20923 0.89090 0.83428 0.75820 1.90763 1.18079 1.84008 1.46730 1.47841 1.10436 1.05721 1.71647 1.22040 0.81000 1.02669 1.01214 1.21271 0.96526 0.89789 0.92869 1.19688 0.96673 0.92499 0.99622 1.28991 0.94031 0.94137 0.93682 1.81304 1.10049 1.11554 1.08165 1.21138 0.97032 0.89243 1.04209 0.94036 0.90792 0.91753 0.95160 0.93802 0.92740 0.91108 0.90318 0.91626 0.91323 0.90590 0.91240 0.91877 0.90982 0.90163 0.89556 0.88782 0.86797 0.87206 0.90147 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 9.84 59.85 0.59 1.73 16 2 N -0.60 -12.62 2.86 -182.95 -0.52 -13.15 16 3 C 0.24 6.42 5.17 -5.20 -0.03 6.39 16 4 C -0.52 -14.88 9.39 -34.44 -0.32 -15.20 16 5 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 8 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.51 10.46 6.93 -10.99 -0.08 10.38 16 13 O -0.54 -13.82 15.53 5.55 0.09 -13.74 16 14 C -0.10 -1.45 1.71 -91.77 -0.16 -1.60 16 15 H 0.09 0.98 7.67 -51.93 -0.40 0.58 16 16 C -0.12 -1.41 4.90 -26.73 -0.13 -1.54 16 17 C -0.11 -0.85 5.92 -26.73 -0.16 -1.01 16 18 C -0.12 -0.90 4.84 -26.73 -0.13 -1.03 16 19 C -0.10 -0.92 1.72 -91.75 -0.16 -1.08 16 20 H 0.10 0.64 7.40 -51.93 -0.38 0.25 16 21 C 0.52 5.17 7.08 -10.98 -0.08 5.09 16 22 O -0.52 -7.64 15.56 5.56 0.09 -7.56 16 23 N -0.62 -3.70 2.87 -181.58 -0.52 -4.22 16 24 C 0.07 0.18 8.80 59.84 0.53 0.70 16 25 C 0.12 0.64 5.36 -4.04 -0.02 0.62 16 26 C -0.04 -0.19 6.03 -29.52 -0.18 -0.37 16 27 C 0.21 1.63 15.44 -20.73 -0.32 1.31 16 28 N -0.43 -4.85 18.54 42.19 0.78 -4.07 16 29 C -0.08 -1.08 3.12 -26.71 -0.08 -1.16 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.16 8.02 -51.93 -0.42 0.75 16 32 H 0.06 0.78 4.37 -51.93 -0.23 0.55 16 33 H 0.03 0.80 8.07 -51.93 -0.42 0.39 16 34 H 0.04 1.32 7.36 -51.93 -0.38 0.93 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 37 H 0.08 0.93 5.45 -51.93 -0.28 0.65 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.34 4.53 -51.93 -0.24 0.10 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.12 6.95 -51.93 -0.36 -0.24 16 43 H 0.07 0.03 8.07 -51.93 -0.42 -0.39 16 44 H 0.08 0.15 6.01 -51.93 -0.31 -0.17 16 45 H 0.09 0.27 8.07 -51.93 -0.42 -0.15 16 46 H 0.09 0.73 7.42 -51.93 -0.39 0.34 16 47 H 0.11 0.62 8.14 -51.92 -0.42 0.19 16 48 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 49 H 0.08 1.36 7.95 -51.93 -0.41 0.95 16 50 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 399.79 15.07 6.02 6.02 Total: -1.00 -38.45 399.79 -7.15 -45.60 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -7.98 Total: -4.59 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -0.82 Total: 4.86 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.47 Total: -47.49 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: 0.17 Total: -21.29 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.45 -7.15 -45.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181420366.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.693 kcal (2) G-P(sol) polarization free energy of solvation -38.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds