Wall clock time and date at job start Tue Mar 31 2020 18:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 119.99872 * 2 1 4 4 C 1.50694 * 109.47254 * 269.99574 * 3 2 1 5 5 H 1.08003 * 119.99799 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00272 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99909 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00129 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47312 * 90.00285 * 8 6 4 10 10 H 1.48502 * 109.47055 * 210.00183 * 8 6 4 11 11 H 1.48497 * 109.47079 * 330.00162 * 8 6 4 12 12 C 1.34770 * 119.99800 * 179.97438 * 2 1 3 13 13 O 1.21288 * 119.99881 * 184.80612 * 12 2 1 14 14 C 1.50704 * 120.00332 * 4.80297 * 12 2 1 15 15 H 1.09001 * 109.46853 * 309.87413 * 14 12 2 16 16 C 1.53004 * 109.47072 * 69.86584 * 14 12 2 17 17 C 1.52992 * 109.47365 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.46997 * 300.00243 * 17 16 14 19 19 C 1.53001 * 109.47045 * 60.00185 * 18 17 16 20 20 H 1.08996 * 109.47496 * 60.00000 * 19 18 17 21 21 C 1.50702 * 109.46777 * 180.02562 * 19 18 17 22 22 O 1.21282 * 120.00150 * 120.00146 * 21 19 18 23 23 N 1.34777 * 119.99918 * 299.99228 * 21 19 18 24 24 C 1.46493 * 119.99946 * 0.02562 * 23 21 19 25 25 C 1.46504 * 120.00015 * 180.02562 * 23 21 19 26 26 C 1.52995 * 109.47235 * 90.00064 * 25 23 21 27 27 C 1.47198 * 109.47521 * 180.02562 * 26 25 23 28 28 N 9.99574 * 116.33668 * 169.29652 * 13 1 2 29 29 C 1.52996 * 109.47509 * 189.86667 * 14 12 2 30 30 H 1.09002 * 109.47047 * 263.31429 * 1 2 3 31 31 H 1.09004 * 109.47119 * 23.31190 * 1 2 3 32 32 H 1.08997 * 109.47224 * 143.31385 * 1 2 3 33 33 H 1.09005 * 109.47192 * 30.00157 * 3 2 1 34 34 H 1.09004 * 109.46872 * 149.99687 * 3 2 1 35 35 H 0.96996 * 120.00220 * 180.02562 * 7 6 4 36 36 H 1.09008 * 109.46569 * 59.99989 * 16 14 12 37 37 H 1.08997 * 109.46815 * 300.00536 * 16 14 12 38 38 H 1.09005 * 109.47240 * 59.99839 * 17 16 14 39 39 H 1.09000 * 109.47248 * 180.02562 * 17 16 14 40 40 H 1.09004 * 109.46688 * 179.97438 * 18 17 16 41 41 H 1.08996 * 109.46974 * 299.99865 * 18 17 16 42 42 H 1.09003 * 109.47241 * 89.99986 * 24 23 21 43 43 H 1.09002 * 109.47156 * 209.99278 * 24 23 21 44 44 H 1.08993 * 109.47369 * 329.99728 * 24 23 21 45 45 H 1.08999 * 109.46978 * 210.00251 * 25 23 21 46 46 H 1.09003 * 109.46749 * 330.00116 * 25 23 21 47 47 H 1.09007 * 109.47170 * 300.00227 * 26 25 23 48 48 H 1.09002 * 109.47264 * 59.99781 * 26 25 23 49 49 H 1.08998 * 109.47306 * 300.00619 * 29 14 12 50 50 H 1.09000 * 109.46884 * 60.00114 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4207 5 1 2.0975 1.0961 -2.2416 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6731 8 14 3.4368 3.4175 -3.4339 9 1 2.3065 4.2601 -3.9003 10 1 4.6969 4.2008 -3.4965 11 1 3.5542 2.2205 -4.3049 12 6 2.1388 -1.1672 0.0005 13 8 3.3485 -1.1690 0.0885 14 6 1.3893 -2.4701 -0.1082 15 1 0.5818 -2.4868 0.6238 16 6 0.8046 -2.6062 -1.5155 17 6 0.0431 -3.9286 -1.6257 18 6 0.9997 -5.0919 -1.3561 19 6 1.5843 -4.9558 0.0512 20 1 0.7769 -4.9722 0.7833 21 6 2.5269 -6.1013 0.3165 22 8 3.6926 -5.8814 0.5691 23 7 2.0745 -7.3701 0.2732 24 6 0.6667 -7.6358 -0.0322 25 6 2.9908 -8.4837 0.5317 26 6 2.9925 -8.8062 2.0272 27 6 3.9135 -9.9246 2.2870 28 7 4.6253 -10.7887 2.4856 29 6 2.3462 -3.6330 0.1612 30 1 -0.3633 -0.1196 1.0207 31 1 -0.3633 0.9438 -0.4067 32 1 -0.3633 -0.8241 -0.6139 33 1 1.6084 2.0284 0.5139 34 1 3.1499 1.1384 0.5139 35 1 4.0294 4.4444 -0.8503 36 1 1.6121 -2.5893 -2.2476 37 1 0.1229 -1.7777 -1.7074 38 1 -0.7643 -3.9451 -0.8936 39 1 -0.3730 -4.0258 -2.6285 40 1 0.4570 -6.0340 -1.4342 41 1 1.8071 -5.0755 -2.0881 42 1 0.5435 -7.7481 -1.1094 43 1 0.3534 -8.5528 0.4668 44 1 0.0556 -6.8042 0.3186 45 1 2.6647 -9.3600 -0.0286 46 1 3.9973 -8.2061 0.2187 47 1 3.3185 -7.9298 2.5876 48 1 1.9860 -9.0837 2.3403 49 1 3.1537 -3.6162 -0.5708 50 1 2.7628 -3.5361 1.1638 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181420366.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:32 Heat of formation + Delta-G solvation = -77.441008 kcal Electronic energy + Delta-G solvation = -29443.437355 eV Core-core repulsion = 25469.458622 eV Total energy + Delta-G solvation = -3973.978734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.69034 -40.69796 -38.34436 -37.82000 -36.69989 -36.58715 -34.76152 -33.36548 -31.81249 -31.61187 -29.60862 -27.68184 -27.33793 -26.05351 -25.50411 -23.70095 -23.27428 -21.18136 -20.14645 -19.79989 -18.69447 -18.66698 -18.05507 -17.70742 -17.14643 -16.79168 -16.37606 -16.23846 -16.09750 -15.82121 -15.77077 -14.95548 -14.82357 -14.70727 -14.42908 -14.22104 -14.12429 -13.78239 -13.59451 -13.56231 -13.47365 -13.42616 -13.31325 -13.09247 -13.02057 -12.88100 -12.75409 -12.74191 -12.49221 -12.23576 -12.19457 -12.03827 -11.88429 -11.74361 -11.49076 -11.32412 -11.25496 -10.64912 -10.58545 -10.33971 -9.64531 -9.36314 -8.22756 -6.38099 1.34623 1.38594 1.48516 1.56393 1.73808 1.77432 1.87532 2.06785 2.34139 2.50951 3.06169 3.12990 3.49914 3.65139 3.81600 3.91372 4.04960 4.08563 4.22950 4.26188 4.35971 4.41010 4.47290 4.51696 4.52550 4.54306 4.64028 4.73522 4.78864 4.83423 4.89530 4.97136 4.99815 5.03366 5.09353 5.14380 5.19664 5.25636 5.30988 5.34469 5.40422 5.43047 5.57309 5.59585 5.63232 5.87695 6.06352 6.41775 6.55693 6.70407 6.84168 7.25280 7.28342 7.54122 8.84180 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.002315 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.931360 B =12090.556019 C =12591.285341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.609 5.609 3 C 0.257 3.743 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.003 3.997 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.259 1.259 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.493 3.507 13 O -0.608 6.608 14 C -0.087 4.087 15 H 0.131 0.869 16 C -0.118 4.118 17 C -0.102 4.102 18 C -0.119 4.119 19 C -0.092 4.092 20 H 0.141 0.859 21 C 0.512 3.488 22 O -0.587 6.587 23 N -0.608 5.608 24 C 0.058 3.942 25 C 0.118 3.882 26 C -0.034 4.034 27 C 0.239 3.761 28 N -0.499 5.499 29 C -0.073 4.073 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.023 0.977 34 H -0.009 1.009 35 H 0.267 0.733 36 H 0.034 0.966 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.041 0.959 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.097 0.903 45 H 0.118 0.882 46 H 0.059 0.941 47 H 0.105 0.895 48 H 0.154 0.846 49 H 0.031 0.969 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.981 -25.840 0.175 32.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.340 5.340 3 C 0.135 3.865 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.195 4.195 7 N -0.570 5.570 8 Si 0.793 3.207 9 H -0.184 1.184 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.282 3.718 13 O -0.490 6.490 14 C -0.108 4.108 15 H 0.149 0.851 16 C -0.156 4.156 17 C -0.139 4.139 18 C -0.156 4.156 19 C -0.113 4.113 20 H 0.159 0.841 21 C 0.302 3.698 22 O -0.466 6.466 23 N -0.340 5.340 24 C -0.083 4.083 25 C -0.007 4.007 26 C -0.075 4.075 27 C -0.078 4.078 28 N -0.177 5.177 29 C -0.111 4.111 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.041 0.959 34 H 0.009 0.991 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.106 0.894 40 H 0.138 0.862 41 H 0.060 0.940 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.115 0.885 45 H 0.136 0.864 46 H 0.078 0.922 47 H 0.123 0.877 48 H 0.171 0.829 49 H 0.050 0.950 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.643 -26.838 0.689 32.125 hybrid contribution 1.359 1.518 -0.556 2.112 sum -16.284 -25.320 0.133 30.104 Atomic orbital electron populations 1.22196 0.77712 1.04436 1.02945 1.48160 1.08509 1.06116 1.71240 1.18746 0.91033 0.80718 0.96011 1.21704 1.36744 1.06441 0.92978 0.92681 1.25924 0.94951 0.96546 1.02128 1.70064 1.39014 1.14770 1.33113 0.85390 0.78131 0.78213 0.78927 1.18369 1.20853 1.19792 1.21620 0.87672 0.86975 0.75506 1.90641 1.17580 1.88277 1.52471 1.21320 0.98657 0.89190 1.01631 0.85149 1.21734 0.99824 1.01174 0.92842 1.21528 0.97570 0.90446 1.04343 1.21893 0.99311 1.01782 0.92658 1.21335 0.97835 0.90172 1.01956 0.84102 1.21169 0.88300 0.85055 0.75299 1.90752 1.20752 1.85115 1.49994 1.47835 1.12214 1.04214 1.69711 1.22465 0.78247 1.04981 1.02604 1.21324 0.95179 0.90449 0.93760 1.19827 0.97942 0.90812 0.98896 1.29533 0.92967 0.93512 0.91798 1.81330 1.12106 1.13942 1.10330 1.20984 0.96555 0.92740 1.00869 0.90919 0.91548 0.87860 0.95882 0.99102 0.92452 0.94680 0.89795 0.87732 0.89442 0.86232 0.94004 0.90627 0.87917 0.88463 0.86417 0.92203 0.87716 0.82883 0.95034 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.93 9.84 127.77 1.26 3.18 16 2 N -0.61 -26.17 2.86 -851.12 -2.43 -28.60 16 3 C 0.26 14.32 5.17 85.63 0.44 14.76 16 4 C -0.54 -31.78 9.39 25.60 0.24 -31.54 16 5 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 6 C 0.00 0.19 5.46 84.65 0.46 0.65 16 7 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 8 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 9 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 12 C 0.49 21.23 6.93 87.66 0.61 21.84 16 13 O -0.61 -34.13 15.53 -3.05 -0.05 -34.18 16 14 C -0.09 -2.33 1.71 -11.54 -0.02 -2.35 16 15 H 0.13 2.39 7.67 -2.39 -0.02 2.37 16 16 C -0.12 -2.54 4.90 30.59 0.15 -2.39 16 17 C -0.10 -0.99 5.92 30.59 0.18 -0.81 16 18 C -0.12 -1.26 4.84 30.60 0.15 -1.12 16 19 C -0.09 -1.41 1.72 -11.52 -0.02 -1.43 16 20 H 0.14 1.00 7.40 -2.39 -0.02 0.99 16 21 C 0.51 9.70 7.08 87.66 0.62 10.32 16 22 O -0.59 -18.44 15.56 -3.04 -0.05 -18.49 16 23 N -0.61 -5.27 2.87 -846.77 -2.43 -7.70 16 24 C 0.06 -0.08 8.80 127.77 1.12 1.04 16 25 C 0.12 1.00 5.36 86.38 0.46 1.46 16 26 C -0.03 -0.22 6.03 28.79 0.17 -0.05 16 27 C 0.24 3.51 15.44 89.43 1.38 4.89 16 28 N -0.50 -11.27 18.54 20.02 0.37 -10.90 16 29 C -0.07 -2.10 3.12 30.61 0.10 -2.00 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.99 8.02 -2.38 -0.02 1.97 16 32 H 0.10 2.09 4.37 -2.39 -0.01 2.08 16 33 H 0.02 1.30 8.07 -2.38 -0.02 1.28 16 34 H -0.01 -0.60 7.36 -2.38 -0.02 -0.62 16 35 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 36 H 0.03 0.99 8.14 -2.38 -0.02 0.98 16 37 H 0.08 1.70 5.45 -2.39 -0.01 1.69 16 38 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 39 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.12 0.29 4.53 -2.39 -0.01 0.28 16 41 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.08 -0.21 6.95 -2.39 -0.02 -0.22 16 43 H 0.10 -0.66 8.07 -2.39 -0.02 -0.68 16 44 H 0.10 -0.39 6.01 -2.39 -0.01 -0.40 16 45 H 0.12 0.30 8.07 -2.39 -0.02 0.28 16 46 H 0.06 0.96 7.42 -2.39 -0.02 0.94 16 47 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 48 H 0.15 -0.24 8.14 -2.39 -0.02 -0.26 16 49 H 0.03 1.18 7.95 -2.39 -0.02 1.17 16 50 H 0.04 1.49 8.10 -2.39 -0.02 1.47 16 Total: -1.00 -98.68 399.79 5.97 -92.71 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: 0.94 Total: 0.38 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 7.31 Total: 16.46 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -4.21 Total: -104.60 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -0.09 Total: -52.67 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -98.68 5.97 -92.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181420366.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.269 kcal (2) G-P(sol) polarization free energy of solvation -98.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds