Wall clock time and date at job start Tue Mar 31 2020 18:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35670 * 117.00261 * 2 1 4 4 N 1.32276 * 119.68307 * 359.96771 * 3 2 1 5 5 C 1.31933 * 121.65058 * 180.02562 * 4 3 2 6 6 C 1.38095 * 120.83165 * 0.02562 * 5 4 3 7 7 C 1.38786 * 119.28623 * 359.72760 * 6 5 4 8 8 C 1.38422 * 118.48387 * 0.53618 * 7 6 5 9 9 C 1.50699 * 120.44036 * 179.73981 * 8 7 6 10 10 N 1.46908 * 109.46805 * 259.71900 * 9 8 7 11 11 C 1.46904 * 110.99642 * 66.04621 * 10 9 8 12 12 C 1.50703 * 109.46848 * 199.61543 * 11 10 9 13 13 H 1.08000 * 119.99803 * 355.84958 * 12 11 10 14 14 C 1.37876 * 119.99943 * 175.84756 * 12 11 10 15 15 N 1.31511 * 120.00057 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99839 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47066 * 90.00127 * 16 14 12 18 18 H 1.48500 * 109.46985 * 209.99922 * 16 14 12 19 19 H 1.48498 * 109.47501 * 330.00172 * 16 14 12 20 20 C 1.46898 * 110.99922 * 190.00170 * 10 9 8 21 21 C 1.53002 * 109.47291 * 76.05077 * 20 10 9 22 22 N 1.46898 * 109.47290 * 183.40701 * 21 20 10 23 23 C 1.47014 * 111.00182 * 293.64085 * 22 21 20 24 24 C 1.53098 * 109.26011 * 177.60558 * 23 22 21 25 25 O 1.43013 * 109.25459 * 56.84889 * 24 23 22 26 26 C 1.43024 * 113.73837 * 301.32722 * 25 24 23 27 27 C 1.47012 * 110.99820 * 170.00112 * 22 21 20 28 28 H 1.09005 * 109.47039 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47293 * 300.00294 * 1 2 3 30 30 H 1.08997 * 109.46971 * 60.00551 * 1 2 3 31 31 H 1.08003 * 119.58753 * 179.97438 * 5 4 3 32 32 H 1.08004 * 120.35145 * 179.97438 * 6 5 4 33 33 H 1.07999 * 120.75213 * 180.29301 * 7 6 5 34 34 H 1.09000 * 109.46959 * 139.72615 * 9 8 7 35 35 H 1.08996 * 109.47379 * 19.72234 * 9 8 7 36 36 H 1.08994 * 109.47364 * 319.62104 * 11 10 9 37 37 H 1.08995 * 109.46856 * 79.62156 * 11 10 9 38 38 H 0.96996 * 120.00455 * 179.97438 * 15 14 12 39 39 H 1.08994 * 109.46909 * 196.05552 * 20 10 9 40 40 H 1.09003 * 109.47182 * 316.05600 * 20 10 9 41 41 H 1.08999 * 109.47018 * 303.41042 * 21 20 10 42 42 H 1.09006 * 109.46634 * 63.40531 * 21 20 10 43 43 H 1.09006 * 109.50288 * 297.54135 * 23 22 21 44 44 H 1.09004 * 109.50584 * 57.66599 * 23 22 21 45 45 H 1.08990 * 109.50451 * 296.91448 * 24 23 22 46 46 H 1.08994 * 109.54266 * 176.80086 * 24 23 22 47 47 H 1.09004 * 109.50490 * 298.73963 * 26 25 24 48 48 H 1.09004 * 109.54177 * 178.63147 * 26 25 24 49 49 H 1.08990 * 109.50886 * 302.32901 * 27 22 21 50 50 H 1.09004 * 109.50676 * 62.42121 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 7 1.3185 2.3142 -0.0006 5 6 1.8768 3.5096 -0.0012 6 6 3.2507 3.6490 -0.0016 7 6 4.0484 2.5133 0.0043 8 6 3.4322 1.2738 -0.0010 9 6 4.2558 0.0118 -0.0008 10 7 4.3215 -0.5301 -1.3647 11 6 5.0648 0.3722 -2.2544 12 6 4.7177 0.0625 -3.6878 13 1 4.0676 -0.7685 -3.9186 14 6 5.2299 0.8401 -4.7046 15 7 4.9266 0.5702 -5.9555 16 14 6.3547 2.2771 -4.3054 17 1 7.7648 1.8116 -4.2867 18 1 6.1954 3.3321 -5.3383 19 1 5.9982 2.8299 -2.9741 20 6 4.9102 -1.8760 -1.3686 21 6 3.8773 -2.8859 -0.8643 22 7 4.4908 -4.2186 -0.7908 23 6 4.8315 -4.7165 -2.1315 24 6 5.5207 -6.0776 -2.0047 25 8 4.6634 -6.9760 -1.2952 26 6 4.3121 -6.5226 0.0150 27 6 3.6107 -5.1659 -0.0914 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.2515 4.3902 -0.0021 32 1 3.6995 4.6314 -0.0024 33 1 5.1253 2.5949 0.0088 34 1 3.7952 -0.7225 0.6600 35 1 5.2631 0.2353 0.3503 36 1 4.7971 1.4048 -2.0306 37 1 6.1349 0.2329 -2.1015 38 1 5.2866 1.1174 -6.6708 39 1 5.2098 -2.1385 -2.3831 40 1 5.7831 -1.8927 -0.7161 41 1 3.5328 -2.5893 0.1264 42 1 3.0307 -2.9129 -1.5504 43 1 3.9216 -4.8228 -2.7223 44 1 5.5040 -4.0121 -2.6213 45 1 6.4575 -5.9618 -1.4598 46 1 5.7243 -6.4772 -2.9981 47 1 5.2139 -6.4197 0.6186 48 1 3.6414 -7.2434 0.4826 49 1 3.3921 -4.7898 0.9079 50 1 2.6810 -5.2789 -0.6492 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193368797.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:14 Heat of formation + Delta-G solvation = -48.261845 kcal Electronic energy + Delta-G solvation = -30266.980717 eV Core-core repulsion = 26294.267287 eV Total energy + Delta-G solvation = -3972.713430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.62890 -40.55639 -38.89534 -38.54377 -36.63674 -34.76210 -33.69088 -32.19241 -31.95699 -31.13320 -29.41078 -28.17558 -27.38480 -25.91592 -25.00378 -23.92977 -23.50396 -22.95917 -21.45058 -21.24654 -19.22075 -19.00165 -18.01054 -17.60515 -17.17523 -16.95671 -16.76895 -16.45981 -16.26318 -16.16865 -15.96945 -15.68842 -15.34362 -15.19877 -15.03560 -14.73128 -14.49439 -14.23247 -14.05963 -13.94168 -13.83461 -13.47234 -13.23402 -12.99239 -12.82364 -12.67877 -12.50826 -12.37509 -12.30314 -12.08185 -11.99363 -11.80921 -11.68804 -11.45951 -11.35870 -10.79775 -10.67643 -10.62230 -10.56581 -9.45497 -9.30012 -8.96213 -8.27005 -6.29098 0.22338 0.39095 1.32322 1.34675 1.44720 2.27508 2.34315 2.59664 2.86069 2.96416 3.06777 3.42971 3.47009 3.88253 3.93301 3.96137 3.99965 4.04429 4.11761 4.19113 4.24686 4.32019 4.33309 4.44529 4.45670 4.46612 4.54470 4.57528 4.60096 4.66949 4.73280 4.76315 4.82246 4.83449 4.87014 4.90089 4.92113 5.02623 5.08652 5.11848 5.17499 5.32050 5.56666 5.58424 5.86595 5.99043 6.01080 6.17416 6.35887 6.43478 6.66694 6.76000 6.93781 7.33520 8.90116 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008632 B = 0.004384 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.007011 B = 6385.261308 C = 8722.615321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.310 6.310 3 C 0.320 3.680 4 N -0.561 5.561 5 C 0.125 3.875 6 C -0.209 4.209 7 C -0.049 4.049 8 C -0.158 4.158 9 C 0.110 3.890 10 N -0.534 5.534 11 C 0.174 3.826 12 C -0.505 4.505 13 H 0.028 0.972 14 C 0.006 3.994 15 N -0.951 5.951 16 Si 0.941 3.059 17 H -0.266 1.266 18 H -0.285 1.285 19 H -0.241 1.241 20 C 0.077 3.923 21 C 0.082 3.918 22 N -0.537 5.537 23 C 0.015 3.985 24 C 0.071 3.929 25 O -0.404 6.404 26 C 0.064 3.936 27 C 0.017 3.983 28 H 0.114 0.886 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.189 0.811 32 H 0.167 0.833 33 H 0.148 0.852 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.035 0.965 37 H -0.013 1.013 38 H 0.265 0.735 39 H 0.051 0.949 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.016 0.984 43 H 0.024 0.976 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.109 0.891 47 H 0.067 0.933 48 H 0.120 0.880 49 H 0.103 0.897 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.190 -2.923 18.035 18.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.217 6.217 3 C 0.142 3.858 4 N -0.285 5.285 5 C -0.030 4.030 6 C -0.229 4.229 7 C -0.075 4.075 8 C -0.161 4.161 9 C -0.017 4.017 10 N -0.258 5.258 11 C 0.047 3.953 12 C -0.544 4.544 13 H 0.046 0.954 14 C -0.191 4.191 15 N -0.592 5.592 16 Si 0.764 3.236 17 H -0.191 1.191 18 H -0.211 1.211 19 H -0.164 1.164 20 C -0.051 4.051 21 C -0.046 4.046 22 N -0.263 5.263 23 C -0.114 4.114 24 C -0.006 4.006 25 O -0.323 6.323 26 C -0.012 4.012 27 C -0.111 4.111 28 H 0.132 0.868 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.206 0.794 32 H 0.184 0.816 33 H 0.166 0.834 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.005 0.995 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.034 0.966 43 H 0.043 0.957 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.127 0.873 47 H 0.085 0.915 48 H 0.138 0.862 49 H 0.121 0.879 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.090 -3.423 17.888 18.473 hybrid contribution 0.964 1.097 -0.990 1.764 sum -2.126 -2.326 16.899 17.190 Atomic orbital electron populations 1.22934 0.76756 1.03972 1.01729 1.86272 1.23472 1.24497 1.87432 1.19749 0.89194 0.84948 0.91946 1.67330 1.41387 0.99461 1.20364 1.22952 0.93758 0.93837 0.92479 1.22277 0.94793 1.00474 1.05319 1.21672 1.01438 0.91150 0.93206 1.19935 0.91586 0.97030 1.07561 1.20824 0.97035 0.93247 0.90629 1.61707 1.54341 1.02209 1.07562 1.19950 0.90796 0.93284 0.91225 1.21212 1.28401 1.13998 0.90779 0.95370 1.25840 0.98110 1.00595 0.94507 1.70062 1.47176 1.41736 1.00269 0.85799 0.79327 0.79052 0.79381 1.19150 1.21053 1.16388 1.21801 0.95196 0.88109 1.00035 1.21832 0.94691 0.87418 1.00688 1.62228 1.43908 1.02418 1.17704 1.22816 0.99949 0.98283 0.90328 1.22682 0.92553 0.87341 0.98034 1.87941 1.68614 1.46135 1.29628 1.22829 1.00097 0.94252 0.84048 1.22870 0.94239 0.93722 1.00233 0.86791 0.91818 0.93840 0.79408 0.81555 0.83404 0.89357 0.93483 0.94663 0.99519 0.92648 0.93026 0.94009 0.89695 0.96600 0.95725 0.90378 0.91409 0.87346 0.91511 0.86243 0.87918 0.95107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.07 10.38 113.37 1.18 2.25 16 2 O -0.31 -10.49 9.73 -89.87 -0.87 -11.37 16 3 C 0.32 11.14 7.47 84.78 0.63 11.77 16 4 N -0.56 -17.96 9.22 -308.94 -2.85 -20.81 16 5 C 0.13 3.23 11.18 84.64 0.95 4.17 16 6 C -0.21 -5.15 10.11 22.37 0.23 -4.93 16 7 C -0.05 -1.42 8.42 22.44 0.19 -1.23 16 8 C -0.16 -5.32 4.67 -19.67 -0.09 -5.41 16 9 C 0.11 3.69 4.61 85.56 0.39 4.08 16 10 N -0.53 -22.01 4.34 -905.36 -3.93 -25.94 16 11 C 0.17 8.27 3.68 85.56 0.31 8.58 16 12 C -0.51 -29.56 9.07 25.60 0.23 -29.33 16 13 H 0.03 1.87 8.02 -2.91 -0.02 1.85 16 14 C 0.01 0.36 5.47 84.65 0.46 0.82 16 15 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 16 Si 0.94 43.64 27.55 68.60 1.89 45.53 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.24 -10.06 6.42 99.48 0.64 -9.42 16 20 C 0.08 2.90 4.66 86.30 0.40 3.30 16 21 C 0.08 2.67 5.11 86.30 0.44 3.11 16 22 N -0.54 -15.28 4.73 -895.21 -4.23 -19.51 16 23 C 0.01 0.44 5.44 86.31 0.47 0.91 16 24 C 0.07 1.73 7.01 72.01 0.50 2.23 16 25 O -0.40 -10.24 10.83 -148.98 -1.61 -11.86 16 26 C 0.06 1.28 7.01 72.02 0.50 1.78 16 27 C 0.02 0.40 5.65 86.31 0.49 0.88 16 28 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 29 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 30 H 0.04 1.23 8.10 -2.39 -0.02 1.21 16 31 H 0.19 3.33 8.06 -2.91 -0.02 3.30 16 32 H 0.17 2.88 8.06 -2.91 -0.02 2.85 16 33 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 34 H 0.09 2.72 6.33 -2.39 -0.02 2.71 16 35 H 0.05 1.42 8.01 -2.39 -0.02 1.41 16 36 H 0.04 1.66 4.54 -2.39 -0.01 1.65 16 37 H -0.01 -0.60 7.64 -2.39 -0.02 -0.61 16 38 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 39 H 0.05 2.28 5.80 -2.39 -0.01 2.27 16 40 H 0.04 1.46 7.99 -2.39 -0.02 1.44 16 41 H 0.08 2.52 6.61 -2.39 -0.02 2.50 16 42 H 0.02 0.60 8.12 -2.38 -0.02 0.58 16 43 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.08 2.57 6.46 -2.38 -0.02 2.55 16 45 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 47 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 48 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 49 H 0.10 1.94 8.09 -2.39 -0.02 1.92 16 50 H 0.03 0.77 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -74.33 394.20 -3.17 -77.50 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.85 Total: 23.49 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 7.29 Total: 3.00 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -10.71 Total: -126.30 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -2.49 Total: -23.22 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.89 Total: 45.53 kcal Total: -74.33 -3.17 -77.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193368797.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.241 kcal (2) G-P(sol) polarization free energy of solvation -74.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds