Wall clock time and date at job start Tue Mar 31 2020 18:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35989 * 116.99720 * 2 1 4 4 C 1.38570 * 120.07787 * 0.02562 * 3 2 1 5 5 C 1.38238 * 119.99806 * 179.70976 * 4 3 2 6 6 C 1.38253 * 120.14944 * 0.54390 * 5 4 3 7 7 C 1.50696 * 119.92556 * 179.72931 * 6 5 4 8 8 C 1.53003 * 109.47327 * 269.72350 * 7 6 5 9 9 N 1.46496 * 109.47401 * 180.02562 * 8 7 6 10 10 C 1.37485 * 119.99941 * 180.02562 * 9 8 7 11 11 N 1.37484 * 120.00175 * 0.02562 * 10 9 8 12 12 N 1.30338 * 119.99825 * 179.72332 * 10 9 8 13 13 C 1.46505 * 119.99978 * 186.99288 * 12 10 9 14 14 C 1.53002 * 109.46768 * 117.24990 * 13 12 10 15 15 C 1.53006 * 109.46949 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47313 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99909 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00407 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99524 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00446 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47064 * 90.00091 * 20 18 16 22 22 H 1.48501 * 109.47347 * 209.99976 * 20 18 16 23 23 H 1.48504 * 109.47055 * 330.00263 * 20 18 16 24 24 C 1.38240 * 120.14330 * 359.45229 * 6 5 4 25 25 C 1.38564 * 120.00191 * 0.27632 * 24 6 5 26 26 O 1.35999 * 120.07451 * 179.97438 * 25 24 6 27 27 C 1.42901 * 116.99503 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.46845 * 60.00318 * 1 2 3 29 29 H 1.08998 * 109.46911 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46737 * 299.99985 * 1 2 3 31 31 H 1.07998 * 119.99454 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.92452 * 180.29257 * 5 4 3 33 33 H 1.09003 * 109.47260 * 149.72613 * 7 6 5 34 34 H 1.08999 * 109.47623 * 29.72656 * 7 6 5 35 35 H 1.09003 * 109.46736 * 59.99942 * 8 7 6 36 36 H 1.08999 * 109.47019 * 300.00676 * 8 7 6 37 37 H 0.96998 * 119.99753 * 0.02562 * 9 8 7 38 38 H 0.97006 * 119.99751 * 6.35707 * 11 10 9 39 39 H 0.96997 * 120.00085 * 186.35235 * 11 10 9 40 40 H 1.08998 * 109.47212 * 237.25425 * 13 12 10 41 41 H 1.09001 * 109.47032 * 357.25753 * 13 12 10 42 42 H 1.08998 * 109.47608 * 300.00191 * 14 13 12 43 43 H 1.09001 * 109.47225 * 60.00418 * 14 13 12 44 44 H 1.08998 * 109.47028 * 300.00432 * 15 14 13 45 45 H 1.09001 * 109.46910 * 60.00109 * 15 14 13 46 46 H 0.97001 * 119.99353 * 180.02562 * 19 18 16 47 47 H 1.08006 * 119.99929 * 180.24850 * 24 6 5 48 48 H 1.09000 * 109.47073 * 299.99553 * 27 26 25 49 49 H 1.08992 * 109.47682 * 60.00252 * 27 26 25 50 50 H 1.09009 * 109.46685 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9225 3.6057 0.0066 6 6 3.3030 3.6798 0.0008 7 6 3.9837 5.0243 0.0013 8 6 4.2140 5.4799 -1.4411 9 7 4.8762 6.7867 -1.4406 10 6 5.1863 7.4006 -2.6311 11 7 4.8744 6.7884 -3.8219 12 7 5.7706 8.5656 -2.6306 13 6 5.9629 9.2891 -3.8900 14 6 5.1837 10.6051 -3.8462 15 6 5.3840 11.3604 -5.1616 16 6 4.6170 12.6569 -5.1183 17 1 4.0436 12.9160 -4.2405 18 6 4.6464 13.5118 -6.1997 19 7 5.3442 13.1959 -7.2688 20 14 3.6951 15.1184 -6.1463 21 1 4.5623 16.1890 -5.5920 22 1 3.2697 15.4878 -7.5203 23 1 2.4970 14.9559 -5.2840 24 6 4.0603 2.5233 0.0003 25 6 3.4360 1.2863 -0.0001 26 8 4.1796 0.1476 -0.0011 27 6 5.6004 0.3007 -0.0011 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8899 31 1 0.2147 2.3196 0.0014 32 1 1.3343 4.5115 0.0118 33 1 4.9419 4.9463 0.5150 34 1 3.3539 5.7503 0.5154 35 1 3.2558 5.5579 -1.9548 36 1 4.8438 4.7539 -1.9552 37 1 5.0959 7.2187 -0.6004 38 1 4.3546 5.9694 -3.8247 39 1 5.1740 7.1755 -4.6593 40 1 7.0233 9.4992 -4.0301 41 1 5.6007 8.6798 -4.7180 42 1 4.1233 10.3951 -3.7061 43 1 5.5459 11.2145 -3.0182 44 1 6.4443 11.5704 -5.3022 45 1 5.0215 10.7509 -5.9894 46 1 5.3652 13.7976 -8.0294 47 1 5.1387 2.5840 -0.0002 48 1 5.9065 0.8512 -0.8907 49 1 5.9067 0.8497 0.8892 50 1 6.0717 -0.6822 -0.0024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264269611.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:03 Heat of formation + Delta-G solvation = -27.722083 kcal Electronic energy + Delta-G solvation = -27261.407808 eV Core-core repulsion = 23289.585049 eV Total energy + Delta-G solvation = -3971.822759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.02958 -38.88239 -38.69311 -37.69918 -35.31661 -33.81183 -32.32727 -31.73297 -30.78708 -30.36062 -28.97096 -27.67977 -27.27558 -26.06194 -23.79733 -22.66338 -22.58131 -21.54325 -20.37438 -19.52142 -18.84603 -17.65904 -17.36207 -17.17704 -16.69803 -16.48296 -16.01054 -15.66902 -15.31495 -15.20088 -15.05828 -14.89806 -14.65556 -14.39954 -14.07819 -13.68672 -13.46820 -13.18365 -12.92266 -12.58855 -12.47929 -12.41444 -12.23440 -11.84847 -11.65343 -11.62513 -11.52873 -11.46058 -11.25072 -11.17565 -10.77752 -10.58023 -10.47867 -9.58352 -9.31613 -9.16551 -9.04870 -8.98953 -8.63397 -8.26036 -8.19935 -7.39527 -5.91681 -3.92979 0.81225 0.96373 2.82527 2.84166 3.04347 3.25438 3.31238 3.37360 3.42821 3.47222 4.10613 4.27467 4.40400 4.52137 4.53394 4.57834 4.66991 4.67994 4.71852 4.75390 4.77139 4.92589 4.96931 5.05189 5.08877 5.10128 5.22822 5.43726 5.47502 5.54206 5.69031 5.72426 5.81438 6.06956 6.14421 6.21884 6.32852 6.53714 6.59593 6.60202 6.92952 7.11772 7.13450 7.17243 7.32251 7.56021 7.79265 7.96305 8.10200 8.16293 8.54530 8.97949 9.14493 9.70259 11.19703 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020466 B = 0.001516 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.799727 B =18468.681249 C =19185.462214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.096 3.904 4 C -0.170 4.170 5 C -0.109 4.109 6 C -0.077 4.077 7 C -0.086 4.086 8 C 0.132 3.868 9 N -0.731 5.731 10 C 0.611 3.389 11 N -0.898 5.898 12 N -0.660 5.660 13 C 0.081 3.919 14 C -0.099 4.099 15 C 0.021 3.979 16 C -0.515 4.515 17 H 0.054 0.946 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.166 4.166 25 C 0.100 3.900 26 O -0.308 6.308 27 C 0.025 3.975 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.414 0.586 38 H 0.385 0.615 39 H 0.411 0.589 40 H 0.061 0.939 41 H 0.021 0.979 42 H 0.039 0.961 43 H 0.052 0.948 44 H 0.015 0.985 45 H 0.012 0.988 46 H 0.259 0.741 47 H 0.136 0.864 48 H 0.056 0.944 49 H 0.055 0.945 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.495 -32.068 17.541 37.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.051 3.949 4 C -0.189 4.189 5 C -0.127 4.127 6 C -0.078 4.078 7 C -0.124 4.124 8 C 0.006 3.994 9 N -0.377 5.377 10 C 0.244 3.756 11 N -0.458 5.458 12 N -0.401 5.401 13 C -0.049 4.049 14 C -0.137 4.137 15 C -0.017 4.017 16 C -0.554 4.554 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.185 4.185 25 C 0.055 3.945 26 O -0.221 6.221 27 C -0.070 4.070 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.251 0.749 38 H 0.212 0.788 39 H 0.245 0.755 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.034 0.966 45 H 0.030 0.970 46 H 0.068 0.932 47 H 0.154 0.846 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.079 -31.864 17.871 37.036 hybrid contribution -0.833 0.764 -0.904 1.447 sum -6.912 -31.101 16.966 36.096 Atomic orbital electron populations 1.23081 0.78466 1.04063 1.01307 1.86173 1.21083 1.25921 1.88999 1.18288 0.89176 0.85309 1.02172 1.21076 1.00062 0.91417 1.06326 1.20810 0.93799 0.97277 1.00806 1.19356 0.93280 0.94018 1.01148 1.20669 1.01466 0.93664 0.96573 1.21213 0.96991 0.84487 0.96661 1.43730 1.67822 1.20883 1.05308 1.18844 0.88569 0.88088 0.80056 1.43163 1.64068 1.31264 1.07295 1.72442 1.31454 1.07241 1.28993 1.21717 0.99834 0.95169 0.88219 1.21603 0.97770 0.93884 1.00479 1.19100 0.97009 0.94392 0.91169 1.21291 1.29378 1.03897 1.00822 0.92753 1.25032 0.95731 0.98260 0.95575 1.69977 1.41470 1.37057 1.05233 0.86601 0.80314 0.84036 0.77088 1.20674 1.21303 1.19949 1.20979 1.00406 0.90520 1.06557 1.18228 0.88259 0.86116 1.01912 1.86177 1.18766 1.28204 1.88985 1.23092 0.78493 1.03993 1.01390 0.92596 0.88178 0.92672 0.84648 0.85236 0.90058 0.89724 0.92172 0.92364 0.74886 0.78760 0.75520 0.92111 0.96084 0.94176 0.92948 0.96624 0.96978 0.93154 0.84596 0.92552 0.92614 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.82 10.28 -34.21 -0.35 -3.17 16 3 C 0.10 0.87 6.70 -39.12 -0.26 0.61 16 4 C -0.17 -1.22 9.04 -39.46 -0.36 -1.57 16 5 C -0.11 -0.74 9.69 -39.58 -0.38 -1.12 16 6 C -0.08 -0.53 5.13 -104.62 -0.54 -1.07 16 7 C -0.09 -0.51 5.46 -27.88 -0.15 -0.66 16 8 C 0.13 0.98 5.04 -4.04 -0.02 0.96 16 9 N -0.73 -7.75 5.67 -61.79 -0.35 -8.10 16 10 C 0.61 8.80 8.62 -320.09 -2.76 6.04 16 11 N -0.90 -10.84 8.72 30.14 0.26 -10.57 16 12 N -0.66 -12.06 10.62 -61.77 -0.66 -12.72 16 13 C 0.08 1.62 6.31 -4.04 -0.03 1.60 16 14 C -0.10 -2.32 5.48 -26.73 -0.15 -2.46 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -15.42 9.11 -34.44 -0.31 -15.73 16 17 H 0.05 1.59 7.74 -52.48 -0.41 1.19 16 18 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 20 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 24 C -0.17 -1.21 8.69 -39.46 -0.34 -1.56 16 25 C 0.10 0.91 6.70 -39.12 -0.26 0.65 16 26 O -0.31 -2.86 10.28 -34.24 -0.35 -3.21 16 27 C 0.03 0.13 9.81 101.05 0.99 1.12 16 28 H 0.06 0.21 7.67 -51.93 -0.40 -0.18 16 29 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.20 7.66 -51.93 -0.40 -0.20 16 31 H 0.14 0.68 6.30 -52.49 -0.33 0.35 16 32 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 36 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 37 H 0.41 4.20 8.59 -40.82 -0.35 3.85 16 38 H 0.38 3.56 7.39 -40.82 -0.30 3.26 16 39 H 0.41 5.26 6.28 -40.82 -0.26 5.00 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.02 0.39 5.42 -51.93 -0.28 0.11 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.14 0.76 6.30 -52.48 -0.33 0.43 16 48 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 49 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 50 H 0.10 0.35 8.14 -51.92 -0.42 -0.07 16 LS Contribution 409.94 15.07 6.18 6.18 Total: -1.00 -36.56 409.94 -11.41 -47.97 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -8.04 Total: 3.41 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -3.82 Total: -10.11 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -0.01 Total: -58.47 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.70 Total: -6.38 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.56 -11.41 -47.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264269611.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.249 kcal (2) G-P(sol) polarization free energy of solvation -36.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds