Wall clock time and date at job start Tue Mar 31 2020 18:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35989 * 116.99720 * 2 1 4 4 C 1.38570 * 120.07787 * 0.02562 * 3 2 1 5 5 C 1.38238 * 119.99806 * 179.70976 * 4 3 2 6 6 C 1.38253 * 120.14944 * 0.54390 * 5 4 3 7 7 C 1.50696 * 119.92556 * 179.72931 * 6 5 4 8 8 C 1.53003 * 109.47327 * 269.72350 * 7 6 5 9 9 N 1.46496 * 109.47401 * 180.02562 * 8 7 6 10 10 C 1.37485 * 119.99941 * 180.02562 * 9 8 7 11 11 N 1.37484 * 120.00175 * 0.02562 * 10 9 8 12 12 N 1.30338 * 119.99825 * 179.72332 * 10 9 8 13 13 C 1.46505 * 119.99978 * 186.99288 * 12 10 9 14 14 C 1.53002 * 109.46768 * 117.24990 * 13 12 10 15 15 C 1.53006 * 109.46949 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47313 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99909 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00407 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99524 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00446 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47064 * 90.00091 * 20 18 16 22 22 H 1.48501 * 109.47347 * 209.99976 * 20 18 16 23 23 H 1.48504 * 109.47055 * 330.00263 * 20 18 16 24 24 C 1.38240 * 120.14330 * 359.45229 * 6 5 4 25 25 C 1.38564 * 120.00191 * 0.27632 * 24 6 5 26 26 O 1.35999 * 120.07451 * 179.97438 * 25 24 6 27 27 C 1.42901 * 116.99503 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.46845 * 60.00318 * 1 2 3 29 29 H 1.08998 * 109.46911 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46737 * 299.99985 * 1 2 3 31 31 H 1.07998 * 119.99454 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.92452 * 180.29257 * 5 4 3 33 33 H 1.09003 * 109.47260 * 149.72613 * 7 6 5 34 34 H 1.08999 * 109.47623 * 29.72656 * 7 6 5 35 35 H 1.09003 * 109.46736 * 59.99942 * 8 7 6 36 36 H 1.08999 * 109.47019 * 300.00676 * 8 7 6 37 37 H 0.96998 * 119.99753 * 0.02562 * 9 8 7 38 38 H 0.97006 * 119.99751 * 6.35707 * 11 10 9 39 39 H 0.96997 * 120.00085 * 186.35235 * 11 10 9 40 40 H 1.08998 * 109.47212 * 237.25425 * 13 12 10 41 41 H 1.09001 * 109.47032 * 357.25753 * 13 12 10 42 42 H 1.08998 * 109.47608 * 300.00191 * 14 13 12 43 43 H 1.09001 * 109.47225 * 60.00418 * 14 13 12 44 44 H 1.08998 * 109.47028 * 300.00432 * 15 14 13 45 45 H 1.09001 * 109.46910 * 60.00109 * 15 14 13 46 46 H 0.97001 * 119.99353 * 180.02562 * 19 18 16 47 47 H 1.08006 * 119.99929 * 180.24850 * 24 6 5 48 48 H 1.09000 * 109.47073 * 299.99553 * 27 26 25 49 49 H 1.08992 * 109.47682 * 60.00252 * 27 26 25 50 50 H 1.09009 * 109.46685 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9225 3.6057 0.0066 6 6 3.3030 3.6798 0.0008 7 6 3.9837 5.0243 0.0013 8 6 4.2140 5.4799 -1.4411 9 7 4.8762 6.7867 -1.4406 10 6 5.1863 7.4006 -2.6311 11 7 4.8744 6.7884 -3.8219 12 7 5.7706 8.5656 -2.6306 13 6 5.9629 9.2891 -3.8900 14 6 5.1837 10.6051 -3.8462 15 6 5.3840 11.3604 -5.1616 16 6 4.6170 12.6569 -5.1183 17 1 4.0436 12.9160 -4.2405 18 6 4.6464 13.5118 -6.1997 19 7 5.3442 13.1959 -7.2688 20 14 3.6951 15.1184 -6.1463 21 1 4.5623 16.1890 -5.5920 22 1 3.2697 15.4878 -7.5203 23 1 2.4970 14.9559 -5.2840 24 6 4.0603 2.5233 0.0003 25 6 3.4360 1.2863 -0.0001 26 8 4.1796 0.1476 -0.0011 27 6 5.6004 0.3007 -0.0011 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8899 31 1 0.2147 2.3196 0.0014 32 1 1.3343 4.5115 0.0118 33 1 4.9419 4.9463 0.5150 34 1 3.3539 5.7503 0.5154 35 1 3.2558 5.5579 -1.9548 36 1 4.8438 4.7539 -1.9552 37 1 5.0959 7.2187 -0.6004 38 1 4.3546 5.9694 -3.8247 39 1 5.1740 7.1755 -4.6593 40 1 7.0233 9.4992 -4.0301 41 1 5.6007 8.6798 -4.7180 42 1 4.1233 10.3951 -3.7061 43 1 5.5459 11.2145 -3.0182 44 1 6.4443 11.5704 -5.3022 45 1 5.0215 10.7509 -5.9894 46 1 5.3652 13.7976 -8.0294 47 1 5.1387 2.5840 -0.0002 48 1 5.9065 0.8512 -0.8907 49 1 5.9067 0.8497 0.8892 50 1 6.0717 -0.6822 -0.0024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264269611.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:02 Heat of formation + Delta-G solvation = -51.169276 kcal Electronic energy + Delta-G solvation = -27262.424555 eV Core-core repulsion = 23289.585049 eV Total energy + Delta-G solvation = -3972.839506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.55572 -39.70369 -39.39648 -38.35735 -36.61834 -35.40281 -33.93313 -32.61851 -31.89354 -31.29493 -29.68656 -28.34350 -28.07406 -27.36111 -25.09523 -23.84603 -23.13950 -22.17050 -22.01538 -20.86482 -19.40003 -18.61646 -18.50023 -17.99025 -17.74357 -17.50391 -17.01338 -16.50457 -16.13858 -16.06443 -15.97275 -15.69440 -15.65639 -15.35075 -15.29537 -14.62969 -14.50519 -14.21799 -13.97599 -13.70869 -13.57914 -13.21543 -13.01349 -12.96891 -12.87393 -12.69689 -12.56329 -12.40784 -12.15791 -12.06765 -12.04436 -11.90569 -11.71052 -11.56718 -11.40558 -11.19839 -10.54760 -9.98288 -9.96118 -9.68325 -8.75982 -8.64307 -8.18729 -6.30666 0.28156 0.41180 1.39304 1.41654 1.52781 2.04807 2.18809 2.37275 2.38584 2.42042 2.68979 3.12731 3.14632 3.78175 3.87327 4.06422 4.07880 4.11397 4.21264 4.26967 4.38192 4.39877 4.41223 4.43824 4.47160 4.48780 4.57268 4.69064 4.74105 4.74819 4.75989 4.81887 4.96066 5.00462 5.09289 5.18213 5.24831 5.29703 5.30689 5.53572 5.62588 5.73511 5.74095 5.78183 5.86006 6.07014 6.11786 6.27175 6.60254 6.62787 6.84801 7.14971 7.37987 7.79842 8.92353 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020466 B = 0.001516 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.799727 B =18468.681249 C =19185.462214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.074 3.926 4 C -0.171 4.171 5 C -0.112 4.112 6 C -0.079 4.079 7 C -0.077 4.077 8 C 0.131 3.869 9 N -0.720 5.720 10 C 0.620 3.380 11 N -0.888 5.888 12 N -0.703 5.703 13 C 0.093 3.907 14 C -0.082 4.082 15 C 0.027 3.973 16 C -0.546 4.546 17 H 0.054 0.946 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.967 3.033 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.166 4.166 25 C 0.077 3.923 26 O -0.334 6.334 27 C 0.019 3.981 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.417 0.583 38 H 0.401 0.599 39 H 0.409 0.591 40 H 0.047 0.953 41 H 0.032 0.968 42 H 0.035 0.965 43 H 0.040 0.960 44 H -0.009 1.009 45 H -0.006 1.006 46 H 0.264 0.736 47 H 0.151 0.849 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.733 -32.164 18.393 37.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.029 3.971 4 C -0.190 4.190 5 C -0.130 4.130 6 C -0.080 4.080 7 C -0.114 4.114 8 C 0.007 3.993 9 N -0.365 5.365 10 C 0.253 3.747 11 N -0.448 5.448 12 N -0.448 5.448 13 C -0.038 4.038 14 C -0.121 4.121 15 C -0.011 4.011 16 C -0.584 4.584 17 H 0.073 0.927 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.792 3.208 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.190 1.190 24 C -0.185 4.185 25 C 0.032 3.968 26 O -0.249 6.249 27 C -0.076 4.076 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.084 0.916 31 H 0.171 0.829 32 H 0.164 0.836 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.255 0.745 38 H 0.231 0.769 39 H 0.242 0.758 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.010 0.990 45 H 0.013 0.987 46 H 0.073 0.927 47 H 0.168 0.832 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.347 -32.034 18.749 37.838 hybrid contribution -0.485 0.635 -1.147 1.397 sum -7.832 -31.400 17.603 36.839 Atomic orbital electron populations 1.23320 0.76668 1.05362 1.02231 1.86128 1.23136 1.26494 1.89225 1.18632 0.89650 0.85869 1.02996 1.21316 1.01003 0.91003 1.05671 1.21081 0.94066 0.97743 1.00149 1.19462 0.93420 0.94139 1.00949 1.20593 1.02099 0.93193 0.95521 1.21384 0.96946 0.82910 0.98051 1.43888 1.66801 1.21579 1.04203 1.19070 0.86639 0.87378 0.81579 1.43093 1.63606 1.31580 1.06511 1.72402 1.35475 1.09565 1.27395 1.21366 0.98364 0.93995 0.90055 1.21355 0.97924 0.95330 0.97460 1.18987 0.95052 0.94243 0.92800 1.21682 1.30173 1.05242 1.01283 0.92730 1.25997 0.96586 1.02289 0.94929 1.70102 1.42498 1.38633 1.05936 0.85416 0.78950 0.78871 0.77608 1.19688 1.20314 1.18953 1.21161 1.01220 0.90089 1.05995 1.18555 0.88683 0.86677 1.02901 1.86133 1.20520 1.28956 1.89250 1.23312 0.76868 1.05215 1.02178 0.91714 0.86832 0.91601 0.82871 0.83612 0.89111 0.88911 0.91710 0.91643 0.74477 0.76861 0.75821 0.93433 0.94975 0.94666 0.94137 0.99018 0.98720 0.92709 0.83194 0.91835 0.91641 0.86808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.28 16 2 O -0.34 -6.16 10.28 -79.55 -0.82 -6.98 16 3 C 0.07 1.31 6.70 22.57 0.15 1.46 16 4 C -0.17 -2.23 9.04 22.35 0.20 -2.02 16 5 C -0.11 -1.29 9.69 22.27 0.22 -1.08 16 6 C -0.08 -0.91 5.13 -19.86 -0.10 -1.01 16 7 C -0.08 -0.69 5.46 29.85 0.16 -0.53 16 8 C 0.13 1.58 5.04 86.38 0.44 2.02 16 9 N -0.72 -13.56 5.67 -349.41 -1.98 -15.54 16 10 C 0.62 16.83 8.62 260.54 2.25 19.07 16 11 N -0.89 -19.78 8.72 -58.57 -0.51 -20.29 16 12 N -0.70 -25.27 10.62 -349.35 -3.71 -28.98 16 13 C 0.09 3.77 6.31 86.38 0.54 4.32 16 14 C -0.08 -3.92 5.48 30.60 0.17 -3.76 16 15 C 0.03 1.53 4.97 29.85 0.15 1.67 16 16 C -0.55 -33.11 9.11 25.60 0.23 -32.87 16 17 H 0.05 3.22 7.74 -2.91 -0.02 3.20 16 18 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 19 N -0.93 -58.26 13.29 21.45 0.28 -57.97 16 20 Si 0.97 45.82 29.54 68.60 2.03 47.84 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 C -0.17 -2.20 8.69 22.35 0.19 -2.00 16 25 C 0.08 1.38 6.70 22.57 0.15 1.53 16 26 O -0.33 -6.24 10.28 -79.67 -0.82 -7.06 16 27 C 0.02 0.18 9.81 113.37 1.11 1.29 16 28 H 0.06 0.43 7.67 -2.39 -0.02 0.41 16 29 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.41 7.66 -2.39 -0.02 0.40 16 31 H 0.15 1.27 6.30 -2.91 -0.02 1.25 16 32 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.09 0.69 8.08 -2.39 -0.02 0.67 16 34 H 0.09 0.74 8.08 -2.39 -0.02 0.72 16 35 H 0.06 0.78 7.92 -2.39 -0.02 0.76 16 36 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 37 H 0.42 7.51 8.59 -92.71 -0.80 6.71 16 38 H 0.40 6.41 7.39 -92.70 -0.68 5.72 16 39 H 0.41 9.92 6.28 -92.71 -0.58 9.33 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.03 1.19 5.42 -2.39 -0.01 1.18 16 42 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 44 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 45 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 47 H 0.15 1.41 6.30 -2.91 -0.02 1.39 16 48 H 0.06 0.50 7.66 -2.39 -0.02 0.48 16 49 H 0.06 0.48 7.66 -2.39 -0.02 0.46 16 50 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -79.81 409.94 0.82 -78.99 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -1.09 Total: 20.16 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 7.44 Total: -10.19 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -5.92 Total: -122.78 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -1.64 Total: -14.03 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -79.81 0.82 -78.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264269611.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.825 kcal (2) G-P(sol) polarization free energy of solvation -79.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds