Wall clock time and date at job start Tue Mar 31 2020 18:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35741 * 116.99736 * 2 1 4 4 C 1.39281 * 120.84766 * 0.02591 * 3 2 1 5 5 C 1.37947 * 119.09049 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82778 * 359.97438 * 5 4 3 7 7 C 1.31954 * 121.85980 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.58619 * 180.02562 * 7 6 5 9 9 N 1.46902 * 109.47132 * 274.99745 * 8 7 6 10 10 C 1.46895 * 111.00551 * 293.96105 * 9 8 7 11 11 C 1.50699 * 109.47277 * 69.99255 * 10 9 8 12 12 H 1.07993 * 119.99646 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99976 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00106 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00129 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47337 * 89.99676 * 15 13 11 17 17 H 1.48502 * 109.47516 * 209.99979 * 15 13 11 18 18 H 1.48500 * 109.47010 * 330.00045 * 15 13 11 19 19 C 1.46904 * 111.00071 * 169.99959 * 9 8 7 20 20 C 1.53002 * 109.46968 * 190.00395 * 19 9 8 21 21 N 1.46908 * 109.46895 * 180.02562 * 20 19 9 22 22 C 1.47011 * 110.99666 * 293.63491 * 21 20 19 23 23 C 1.53100 * 109.25757 * 177.60599 * 22 21 20 24 24 O 1.43020 * 109.25698 * 56.84897 * 23 22 21 25 25 C 1.43016 * 113.73864 * 301.33056 * 24 23 22 26 26 C 1.47009 * 111.00120 * 170.00133 * 21 20 19 27 27 C 1.37986 * 120.82236 * 0.02776 * 7 6 5 28 28 H 1.08997 * 109.47222 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46918 * 299.99492 * 1 2 3 30 30 H 1.08996 * 109.47451 * 59.99609 * 1 2 3 31 31 H 1.07998 * 120.45472 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.58700 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47912 * 35.00122 * 8 7 6 34 34 H 1.09004 * 109.47032 * 155.00839 * 8 7 6 35 35 H 1.08998 * 109.47506 * 190.00311 * 10 9 8 36 36 H 1.09001 * 109.46472 * 309.99642 * 10 9 8 37 37 H 0.96998 * 120.00182 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.46958 * 310.00363 * 19 9 8 39 39 H 1.09001 * 109.46816 * 70.00297 * 19 9 8 40 40 H 1.08999 * 109.47255 * 299.99786 * 20 19 9 41 41 H 1.08998 * 109.46967 * 60.00480 * 20 19 9 42 42 H 1.08997 * 109.50918 * 297.53971 * 22 21 20 43 43 H 1.09001 * 109.51140 * 57.67183 * 22 21 20 44 44 H 1.08992 * 109.50668 * 296.91780 * 23 22 21 45 45 H 1.09001 * 109.54228 * 176.80287 * 23 22 21 46 46 H 1.09001 * 109.50541 * 298.73633 * 25 24 23 47 47 H 1.08994 * 109.54282 * 178.62566 * 25 24 23 48 48 H 1.09004 * 109.50234 * 302.32403 * 26 21 20 49 49 H 1.09001 * 109.50683 * 62.40889 * 26 21 20 50 50 H 1.08004 * 120.45356 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3040 2.3887 0.0005 5 6 1.9676 3.5980 0.0011 6 7 3.2865 3.6458 0.0016 7 6 4.0231 2.5510 0.0021 8 6 5.5257 2.6652 0.0032 9 7 6.0059 2.8226 -1.3762 10 6 5.7480 1.6106 -2.1650 11 6 4.2666 1.4730 -2.4049 12 1 3.5850 2.2122 -2.0111 13 6 3.7816 0.4034 -3.1271 14 7 4.6118 -0.4972 -3.6063 15 14 1.9455 0.2331 -3.4251 16 1 1.5817 0.9298 -4.6851 17 1 1.5930 -1.2052 -3.5353 18 1 1.2018 0.8396 -2.2918 19 6 7.4323 3.1730 -1.4003 20 6 7.8357 3.5710 -2.8215 21 7 9.2623 3.9208 -2.8458 22 6 9.5196 5.1379 -2.0624 23 6 11.0221 5.4318 -2.0649 24 8 11.4772 5.5508 -3.4156 25 6 11.2430 4.3829 -4.2071 26 6 9.7427 4.0785 -4.2262 27 6 3.4346 1.3029 0.0016 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.2245 2.3566 0.0014 32 1 1.4007 4.5173 0.0011 33 1 5.8239 3.5320 0.5929 34 1 5.9582 1.7639 0.4377 35 1 6.2659 1.6825 -3.1214 36 1 6.1104 0.7388 -1.6203 37 1 4.2706 -1.2499 -4.1141 38 1 7.6126 4.0086 -0.7240 39 1 8.0229 2.3139 -1.0820 40 1 7.6553 2.7354 -3.4978 41 1 7.2451 4.4301 -3.1397 42 1 8.9840 5.9768 -2.5068 43 1 9.1794 4.9899 -1.0375 44 1 11.5531 4.6173 -1.5725 45 1 11.2122 6.3642 -1.5333 46 1 11.7804 3.5378 -3.7768 47 1 11.5922 4.5562 -5.2249 48 1 9.5654 3.1569 -4.7807 49 1 9.2100 4.8999 -4.7054 50 1 4.0432 0.4107 0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267202253.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:36 Heat of formation + Delta-G solvation = -12.447766 kcal Electronic energy + Delta-G solvation = -30224.644345 eV Core-core repulsion = 26253.483930 eV Total energy + Delta-G solvation = -3971.160415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.11789 -39.51135 -38.00444 -36.85470 -35.30648 -32.63309 -31.47687 -31.15377 -30.76867 -29.17969 -27.58653 -27.28224 -26.04898 -24.14506 -23.83288 -22.75741 -22.51040 -20.96198 -20.28825 -19.74764 -17.41247 -16.84348 -16.40228 -16.34538 -16.11536 -15.68708 -15.13366 -15.11548 -15.04089 -14.85521 -14.58538 -14.38747 -14.23408 -13.71385 -13.67420 -13.25920 -13.02221 -12.72987 -12.56038 -12.38263 -12.15811 -11.95871 -11.73154 -11.48535 -11.38474 -11.22096 -11.17388 -11.01563 -10.79688 -10.60294 -10.53736 -10.44460 -10.14734 -9.73864 -9.66154 -9.32104 -8.77546 -8.53158 -8.24918 -8.20536 -7.80658 -7.32398 -6.06556 -3.98584 1.84380 2.15916 3.29749 3.35569 3.37544 3.67247 3.74775 3.91147 4.40082 4.49509 4.88020 5.00225 5.02029 5.05306 5.14036 5.16449 5.20315 5.30118 5.32596 5.34915 5.44630 5.48250 5.49861 5.55381 5.63560 5.66185 5.69750 5.82939 5.84628 5.87746 5.93343 5.98500 6.04567 6.08574 6.20205 6.36797 6.43589 6.52334 6.64955 6.81102 7.00507 7.05730 7.15416 7.19578 7.26289 7.30292 7.78058 7.83761 8.03164 8.11536 8.48171 8.83221 9.00435 9.57584 11.03193 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.003138 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.223760 B = 8920.238018 C = 9980.535647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.145 3.855 4 C -0.262 4.262 5 C 0.105 3.895 6 N -0.497 5.497 7 C 0.190 3.810 8 C 0.121 3.879 9 N -0.531 5.531 10 C 0.186 3.814 11 C -0.493 4.493 12 H 0.072 0.928 13 C 0.063 3.937 14 N -0.893 5.893 15 Si 0.881 3.119 16 H -0.289 1.289 17 H -0.290 1.290 18 H -0.256 1.256 19 C 0.066 3.934 20 C 0.061 3.939 21 N -0.538 5.538 22 C 0.015 3.985 23 C 0.064 3.936 24 O -0.390 6.390 25 C 0.065 3.935 26 C 0.019 3.981 27 C -0.116 4.116 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.122 0.878 32 H 0.143 0.857 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.034 0.966 36 H -0.006 1.006 37 H 0.260 0.740 38 H 0.060 0.940 39 H 0.033 0.967 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.088 0.912 44 H 0.058 0.942 45 H 0.094 0.906 46 H 0.058 0.942 47 H 0.095 0.905 48 H 0.087 0.913 49 H 0.041 0.959 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.293 6.480 5.920 9.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.093 3.907 4 C -0.283 4.283 5 C -0.051 4.051 6 N -0.210 5.210 7 C 0.052 3.948 8 C -0.008 4.008 9 N -0.256 5.256 10 C 0.061 3.939 11 C -0.532 4.532 12 H 0.090 0.910 13 C -0.139 4.139 14 N -0.533 5.533 15 Si 0.710 3.290 16 H -0.216 1.216 17 H -0.216 1.216 18 H -0.181 1.181 19 C -0.062 4.062 20 C -0.066 4.066 21 N -0.263 5.263 22 C -0.113 4.113 23 C -0.013 4.013 24 O -0.309 6.309 25 C -0.012 4.012 26 C -0.110 4.110 27 C -0.137 4.137 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.140 0.860 32 H 0.160 0.840 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.012 0.988 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.103 0.897 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.112 0.888 46 H 0.077 0.923 47 H 0.113 0.887 48 H 0.105 0.895 49 H 0.060 0.940 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.872 7.051 5.747 9.886 hybrid contribution -2.126 -1.318 -0.557 2.563 sum 1.746 5.733 5.189 7.927 Atomic orbital electron populations 1.22987 0.79468 1.03295 1.01038 1.86065 1.20520 1.27055 1.88559 1.18997 0.92364 0.83968 0.95419 1.21932 1.00311 0.93758 1.12320 1.22123 0.90375 0.96079 0.96541 1.67386 1.06377 1.32124 1.15076 1.20413 0.95570 0.87141 0.91656 1.20663 0.89151 0.99861 0.91107 1.62022 1.13686 1.39797 1.10091 1.19901 0.97283 0.84022 0.92670 1.21461 0.92041 1.07588 1.32062 0.90987 1.24853 0.97517 0.95934 0.95619 1.69950 1.34247 1.12770 1.36284 0.86763 0.86605 0.77029 0.78575 1.21634 1.21598 1.18089 1.21873 0.89366 0.99212 0.95777 1.22141 0.84969 1.01011 0.98524 1.62175 1.18992 1.33488 1.11686 1.22823 0.96864 0.91713 0.99942 1.22670 0.93218 1.01838 0.83555 1.87949 1.81935 1.38308 1.22667 1.22660 0.94527 0.88225 0.95787 1.22748 0.96151 1.01768 0.90317 1.21032 0.91376 0.99741 1.01533 0.88806 0.93079 0.92807 0.86004 0.83971 0.90753 0.94203 0.94759 0.98835 0.93026 0.92149 0.94918 0.89664 0.93929 0.94009 0.89350 0.92392 0.88750 0.92323 0.88686 0.89456 0.94035 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.57 101.05 0.97 1.35 16 2 O -0.31 -5.87 9.59 -18.93 -0.18 -6.06 16 3 C 0.14 2.86 4.64 -38.82 -0.18 2.68 16 4 C -0.26 -4.64 8.89 -39.30 -0.35 -4.99 16 5 C 0.11 1.88 11.17 -17.60 -0.20 1.68 16 6 N -0.50 -10.01 10.16 -9.55 -0.10 -10.10 16 7 C 0.19 3.90 4.01 -82.63 -0.33 3.56 16 8 C 0.12 2.30 5.28 -4.98 -0.03 2.27 16 9 N -0.53 -10.96 4.56 -237.52 -1.08 -12.05 16 10 C 0.19 4.55 4.55 -4.98 -0.02 4.53 16 11 C -0.49 -12.99 5.77 -34.44 -0.20 -13.18 16 12 H 0.07 1.93 4.92 -52.49 -0.26 1.67 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 15 Si 0.88 21.46 28.35 -169.99 -4.82 16.64 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.26 -5.80 3.76 56.52 0.21 -5.59 16 19 C 0.07 1.15 4.89 -3.82 -0.02 1.13 16 20 C 0.06 1.03 4.91 -3.82 -0.02 1.01 16 21 N -0.54 -7.74 4.73 -234.30 -1.11 -8.84 16 22 C 0.01 0.19 5.44 -3.71 -0.02 0.17 16 23 C 0.06 0.71 7.01 37.21 0.26 0.97 16 24 O -0.39 -4.97 10.83 -35.23 -0.38 -5.36 16 25 C 0.07 0.74 7.01 37.21 0.26 1.00 16 26 C 0.02 0.24 5.64 -3.71 -0.02 0.22 16 27 C -0.12 -2.43 6.26 -39.30 -0.25 -2.68 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.05 0.59 7.71 -51.93 -0.40 0.19 16 30 H 0.05 0.77 6.85 -51.93 -0.36 0.41 16 31 H 0.12 1.81 6.47 -52.49 -0.34 1.47 16 32 H 0.14 2.07 8.06 -52.48 -0.42 1.64 16 33 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 34 H 0.04 0.73 7.91 -51.93 -0.41 0.32 16 35 H 0.03 0.90 5.98 -51.93 -0.31 0.59 16 36 H -0.01 -0.16 7.99 -51.93 -0.41 -0.58 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.06 0.93 6.31 -51.93 -0.33 0.61 16 39 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 40 H 0.09 1.62 6.20 -51.93 -0.32 1.30 16 41 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.04 6.38 -51.93 -0.33 0.71 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 49 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.13 2.96 7.99 -52.48 -0.42 2.54 16 LS Contribution 380.29 15.07 5.73 5.73 Total: -1.00 -31.06 380.29 -9.71 -40.77 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -8.27 Total: 2.91 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.24 Total: 1.35 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -1.55 Total: -56.00 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -0.56 Total: -11.41 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.82 Total: 16.64 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.06 -9.71 -40.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267202253.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.325 kcal (2) G-P(sol) polarization free energy of solvation -31.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds