Wall clock time and date at job start Tue Mar 31 2020 18:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35741 * 116.99736 * 2 1 4 4 C 1.39281 * 120.84766 * 0.02591 * 3 2 1 5 5 C 1.37947 * 119.09049 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82778 * 359.97438 * 5 4 3 7 7 C 1.31954 * 121.85980 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.58619 * 180.02562 * 7 6 5 9 9 N 1.46902 * 109.47132 * 274.99745 * 8 7 6 10 10 C 1.46895 * 111.00551 * 293.96105 * 9 8 7 11 11 C 1.50699 * 109.47277 * 69.99255 * 10 9 8 12 12 H 1.07993 * 119.99646 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99976 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00106 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00129 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47337 * 89.99676 * 15 13 11 17 17 H 1.48502 * 109.47516 * 209.99979 * 15 13 11 18 18 H 1.48500 * 109.47010 * 330.00045 * 15 13 11 19 19 C 1.46904 * 111.00071 * 169.99959 * 9 8 7 20 20 C 1.53002 * 109.46968 * 190.00395 * 19 9 8 21 21 N 1.46908 * 109.46895 * 180.02562 * 20 19 9 22 22 C 1.47011 * 110.99666 * 293.63491 * 21 20 19 23 23 C 1.53100 * 109.25757 * 177.60599 * 22 21 20 24 24 O 1.43020 * 109.25698 * 56.84897 * 23 22 21 25 25 C 1.43016 * 113.73864 * 301.33056 * 24 23 22 26 26 C 1.47009 * 111.00120 * 170.00133 * 21 20 19 27 27 C 1.37986 * 120.82236 * 0.02776 * 7 6 5 28 28 H 1.08997 * 109.47222 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46918 * 299.99492 * 1 2 3 30 30 H 1.08996 * 109.47451 * 59.99609 * 1 2 3 31 31 H 1.07998 * 120.45472 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.58700 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47912 * 35.00122 * 8 7 6 34 34 H 1.09004 * 109.47032 * 155.00839 * 8 7 6 35 35 H 1.08998 * 109.47506 * 190.00311 * 10 9 8 36 36 H 1.09001 * 109.46472 * 309.99642 * 10 9 8 37 37 H 0.96998 * 120.00182 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.46958 * 310.00363 * 19 9 8 39 39 H 1.09001 * 109.46816 * 70.00297 * 19 9 8 40 40 H 1.08999 * 109.47255 * 299.99786 * 20 19 9 41 41 H 1.08998 * 109.46967 * 60.00480 * 20 19 9 42 42 H 1.08997 * 109.50918 * 297.53971 * 22 21 20 43 43 H 1.09001 * 109.51140 * 57.67183 * 22 21 20 44 44 H 1.08992 * 109.50668 * 296.91780 * 23 22 21 45 45 H 1.09001 * 109.54228 * 176.80287 * 23 22 21 46 46 H 1.09001 * 109.50541 * 298.73633 * 25 24 23 47 47 H 1.08994 * 109.54282 * 178.62566 * 25 24 23 48 48 H 1.09004 * 109.50234 * 302.32403 * 26 21 20 49 49 H 1.09001 * 109.50683 * 62.40889 * 26 21 20 50 50 H 1.08004 * 120.45356 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3040 2.3887 0.0005 5 6 1.9676 3.5980 0.0011 6 7 3.2865 3.6458 0.0016 7 6 4.0231 2.5510 0.0021 8 6 5.5257 2.6652 0.0032 9 7 6.0059 2.8226 -1.3762 10 6 5.7480 1.6106 -2.1650 11 6 4.2666 1.4730 -2.4049 12 1 3.5850 2.2122 -2.0111 13 6 3.7816 0.4034 -3.1271 14 7 4.6118 -0.4972 -3.6063 15 14 1.9455 0.2331 -3.4251 16 1 1.5817 0.9298 -4.6851 17 1 1.5930 -1.2052 -3.5353 18 1 1.2018 0.8396 -2.2918 19 6 7.4323 3.1730 -1.4003 20 6 7.8357 3.5710 -2.8215 21 7 9.2623 3.9208 -2.8458 22 6 9.5196 5.1379 -2.0624 23 6 11.0221 5.4318 -2.0649 24 8 11.4772 5.5508 -3.4156 25 6 11.2430 4.3829 -4.2071 26 6 9.7427 4.0785 -4.2262 27 6 3.4346 1.3029 0.0016 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.2245 2.3566 0.0014 32 1 1.4007 4.5173 0.0011 33 1 5.8239 3.5320 0.5929 34 1 5.9582 1.7639 0.4377 35 1 6.2659 1.6825 -3.1214 36 1 6.1104 0.7388 -1.6203 37 1 4.2706 -1.2499 -4.1141 38 1 7.6126 4.0086 -0.7240 39 1 8.0229 2.3139 -1.0820 40 1 7.6553 2.7354 -3.4978 41 1 7.2451 4.4301 -3.1397 42 1 8.9840 5.9768 -2.5068 43 1 9.1794 4.9899 -1.0375 44 1 11.5531 4.6173 -1.5725 45 1 11.2122 6.3642 -1.5333 46 1 11.7804 3.5378 -3.7768 47 1 11.5922 4.5562 -5.2249 48 1 9.5654 3.1569 -4.7807 49 1 9.2100 4.8999 -4.7054 50 1 4.0432 0.4107 0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267202253.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:35 Heat of formation + Delta-G solvation = -36.230659 kcal Electronic energy + Delta-G solvation = -30225.675649 eV Core-core repulsion = 26253.483930 eV Total energy + Delta-G solvation = -3972.191719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.58866 -40.56110 -39.44801 -38.29468 -36.56543 -34.64225 -32.89547 -32.24481 -32.14048 -30.55482 -29.43631 -28.51160 -27.26379 -25.67066 -24.95105 -24.25291 -24.14027 -22.32194 -21.50644 -21.21757 -18.82916 -18.70332 -17.80932 -17.59706 -17.15071 -17.09155 -16.60291 -16.40377 -16.27786 -16.10657 -15.97508 -15.88870 -15.60732 -15.15881 -15.05164 -14.60486 -14.44555 -14.21462 -14.07034 -13.96142 -13.66034 -13.23990 -13.12933 -12.98173 -12.77447 -12.52054 -12.44317 -12.42725 -12.30638 -12.23705 -12.01905 -11.85526 -11.52819 -11.36049 -11.27069 -10.66051 -10.58093 -10.27804 -9.66167 -9.43803 -9.42461 -9.03361 -8.15865 -6.12307 0.36831 0.65756 1.34185 1.35349 1.44739 2.35541 2.40382 2.61830 2.94587 3.04299 3.22083 3.56724 3.60011 3.86135 3.91225 3.96410 4.04023 4.11405 4.19456 4.24203 4.29590 4.33610 4.35293 4.37905 4.44097 4.45939 4.55051 4.57304 4.65243 4.66707 4.72520 4.75123 4.83692 4.89744 4.91622 4.98682 5.04351 5.05784 5.14089 5.25606 5.27496 5.31874 5.69567 5.81393 5.90736 5.98921 6.11410 6.18595 6.31649 6.44877 6.62304 6.92397 7.33922 7.47616 8.94432 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.003138 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.223760 B = 8920.238018 C = 9980.535647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.334 6.334 3 C 0.142 3.858 4 C -0.262 4.262 5 C 0.108 3.892 6 N -0.514 5.514 7 C 0.181 3.819 8 C 0.119 3.881 9 N -0.537 5.537 10 C 0.204 3.796 11 C -0.484 4.484 12 H 0.071 0.929 13 C 0.014 3.986 14 N -0.933 5.933 15 Si 0.928 3.072 16 H -0.296 1.296 17 H -0.295 1.295 18 H -0.230 1.230 19 C 0.072 3.928 20 C 0.074 3.926 21 N -0.542 5.542 22 C 0.014 3.986 23 C 0.065 3.935 24 O -0.403 6.403 25 C 0.069 3.931 26 C 0.016 3.984 27 C -0.143 4.143 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.157 0.843 32 H 0.181 0.819 33 H 0.099 0.901 34 H 0.040 0.960 35 H 0.011 0.989 36 H -0.035 1.035 37 H 0.257 0.743 38 H 0.087 0.913 39 H 0.027 0.973 40 H 0.055 0.945 41 H 0.030 0.970 42 H 0.035 0.965 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.119 0.881 46 H 0.063 0.937 47 H 0.117 0.883 48 H 0.083 0.917 49 H 0.035 0.965 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.077 8.429 7.171 11.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.246 6.246 3 C 0.090 3.910 4 C -0.283 4.283 5 C -0.048 4.048 6 N -0.227 5.227 7 C 0.043 3.957 8 C -0.009 4.009 9 N -0.262 5.262 10 C 0.078 3.922 11 C -0.523 4.523 12 H 0.089 0.911 13 C -0.183 4.183 14 N -0.574 5.574 15 Si 0.755 3.245 16 H -0.223 1.223 17 H -0.221 1.221 18 H -0.154 1.154 19 C -0.056 4.056 20 C -0.054 4.054 21 N -0.268 5.268 22 C -0.114 4.114 23 C -0.011 4.011 24 O -0.322 6.322 25 C -0.008 4.008 26 C -0.112 4.112 27 C -0.165 4.165 28 H 0.134 0.866 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.175 0.825 32 H 0.198 0.802 33 H 0.117 0.883 34 H 0.058 0.942 35 H 0.029 0.971 36 H -0.017 1.017 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.137 0.863 46 H 0.081 0.919 47 H 0.134 0.866 48 H 0.102 0.898 49 H 0.053 0.947 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.654 9.020 7.024 11.737 hybrid contribution -1.805 -1.877 -0.850 2.739 sum 0.849 7.143 6.175 9.480 Atomic orbital electron populations 1.23373 0.76836 1.05416 1.02333 1.86049 1.23310 1.26949 1.88339 1.19191 0.92144 0.85152 0.94550 1.22295 1.02049 0.92689 1.11222 1.22833 0.89871 0.97792 0.94304 1.67446 1.07643 1.31756 1.15859 1.20523 0.96128 0.87186 0.91817 1.20756 0.88930 1.00967 0.90252 1.61952 1.15907 1.37363 1.10943 1.19528 0.96200 0.84652 0.91829 1.21608 0.92748 1.07006 1.30906 0.91068 1.25510 1.00947 0.95950 0.95920 1.70069 1.35809 1.13592 1.37956 0.86032 0.83010 0.76674 0.78784 1.22334 1.22108 1.15360 1.21905 0.87335 0.99801 0.96597 1.21868 0.86684 0.99308 0.97519 1.62184 1.16879 1.34898 1.12830 1.22922 0.98194 0.90409 0.99862 1.22801 0.91781 1.03373 0.83175 1.87936 1.81943 1.38877 1.23455 1.22726 0.92908 0.88144 0.96986 1.22825 0.97541 1.01379 0.89489 1.20957 0.92365 0.99139 1.04007 0.86572 0.90275 0.92798 0.82524 0.80163 0.88307 0.94181 0.97094 1.01688 0.93420 0.89446 0.95433 0.92637 0.95133 0.94677 0.88456 0.91853 0.86300 0.91898 0.86551 0.89848 0.94683 0.87336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.36 9.57 113.37 1.08 1.44 16 2 O -0.33 -12.11 9.59 -90.65 -0.87 -12.98 16 3 C 0.14 5.42 4.64 22.76 0.11 5.52 16 4 C -0.26 -8.40 8.89 22.45 0.20 -8.20 16 5 C 0.11 3.51 11.17 84.60 0.95 4.46 16 6 N -0.51 -19.69 10.16 -184.13 -1.87 -21.56 16 7 C 0.18 7.33 4.01 42.48 0.17 7.50 16 8 C 0.12 4.53 5.28 85.56 0.45 4.98 16 9 N -0.54 -22.51 4.56 -905.36 -4.13 -26.64 16 10 C 0.20 10.44 4.55 85.56 0.39 10.83 16 11 C -0.48 -26.13 5.77 25.60 0.15 -25.98 16 12 H 0.07 3.83 4.92 -2.91 -0.01 3.81 16 13 C 0.01 0.81 5.46 84.65 0.46 1.27 16 14 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 15 Si 0.93 44.32 28.35 68.60 1.94 46.26 16 16 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 17 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 18 H -0.23 -9.84 3.76 99.48 0.37 -9.47 16 19 C 0.07 2.49 4.89 86.30 0.42 2.91 16 20 C 0.07 2.58 4.91 86.30 0.42 3.00 16 21 N -0.54 -15.53 4.73 -895.20 -4.23 -19.77 16 22 C 0.01 0.33 5.44 86.32 0.47 0.80 16 23 C 0.07 1.31 7.01 72.02 0.50 1.81 16 24 O -0.40 -9.55 10.83 -148.98 -1.61 -11.16 16 25 C 0.07 1.48 7.01 72.02 0.50 1.98 16 26 C 0.02 0.41 5.64 86.32 0.49 0.90 16 27 C -0.14 -6.07 6.26 22.45 0.14 -5.93 16 28 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.08 1.51 7.71 -2.39 -0.02 1.49 16 30 H 0.05 1.33 6.85 -2.39 -0.02 1.32 16 31 H 0.16 3.86 6.47 -2.91 -0.02 3.84 16 32 H 0.18 4.37 8.06 -2.91 -0.02 4.35 16 33 H 0.10 3.23 7.93 -2.39 -0.02 3.21 16 34 H 0.04 1.51 7.91 -2.39 -0.02 1.49 16 35 H 0.01 0.62 5.98 -2.39 -0.01 0.60 16 36 H -0.03 -1.93 7.99 -2.39 -0.02 -1.95 16 37 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 38 H 0.09 2.57 6.31 -2.39 -0.02 2.56 16 39 H 0.03 0.99 8.12 -2.39 -0.02 0.97 16 40 H 0.06 2.25 6.20 -2.39 -0.01 2.23 16 41 H 0.03 1.12 8.12 -2.39 -0.02 1.10 16 42 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.10 2.10 6.38 -2.39 -0.02 2.09 16 44 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.08 2.19 8.09 -2.39 -0.02 2.17 16 49 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.11 5.06 7.99 -2.91 -0.02 5.04 16 Total: -1.00 -69.19 380.29 -2.98 -72.18 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.59 Total: 22.07 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 6.91 Total: 7.30 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -9.95 Total: -123.66 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -2.48 Total: -24.15 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.94 Total: 46.26 kcal Total: -69.19 -2.98 -72.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267202253.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.945 kcal (2) G-P(sol) polarization free energy of solvation -69.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds