Wall clock time and date at job start Tue Mar 31 2020 18:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35918 * 117.00097 * 2 1 4 4 C 1.39133 * 120.47564 * 179.97438 * 3 2 1 5 5 C 1.38533 * 118.37471 * 179.75461 * 4 3 2 6 6 C 1.38253 * 119.21895 * 0.53967 * 5 4 3 7 7 C 1.50701 * 119.55902 * 179.72979 * 6 5 4 8 8 N 1.46902 * 109.47433 * 94.72107 * 7 6 5 9 9 C 1.46893 * 111.00218 * 287.92546 * 8 7 6 10 10 C 1.50700 * 109.47132 * 299.37925 * 9 8 7 11 11 H 1.07997 * 120.00305 * 4.77715 * 10 9 8 12 12 C 1.37880 * 120.00150 * 184.77807 * 10 9 8 13 13 N 1.31519 * 119.99958 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00161 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46977 * 90.00104 * 14 12 10 16 16 H 1.48504 * 109.47252 * 209.99855 * 14 12 10 17 17 H 1.48501 * 109.47005 * 329.99867 * 14 12 10 18 18 C 1.46904 * 111.00088 * 163.96809 * 8 7 6 19 19 C 1.52998 * 109.47152 * 190.00376 * 18 8 7 20 20 N 1.46891 * 109.47068 * 180.02562 * 19 18 8 21 21 C 1.47017 * 110.99934 * 293.63137 * 20 19 18 22 22 C 1.53100 * 109.25795 * 177.60663 * 21 20 19 23 23 O 1.43020 * 109.25620 * 56.85230 * 22 21 20 24 24 C 1.43013 * 113.73771 * 301.32827 * 23 22 21 25 25 C 1.47013 * 111.00059 * 170.00197 * 20 19 18 26 26 N 1.31849 * 120.88679 * 359.44653 * 6 5 4 27 27 C 1.31838 * 121.77917 * 0.28162 * 26 6 5 28 28 H 1.08996 * 109.47394 * 299.99323 * 1 2 3 29 29 H 1.09005 * 109.47408 * 60.00165 * 1 2 3 30 30 H 1.09002 * 109.46925 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.81062 * 0.03387 * 4 3 2 32 32 H 1.08006 * 120.39324 * 180.26428 * 5 4 3 33 33 H 1.09004 * 109.47203 * 334.72612 * 7 6 5 34 34 H 1.08991 * 109.47544 * 214.72709 * 7 6 5 35 35 H 1.09000 * 109.47400 * 59.37616 * 9 8 7 36 36 H 1.09002 * 109.47462 * 179.37775 * 9 8 7 37 37 H 0.96995 * 120.00391 * 179.97438 * 13 12 10 38 38 H 1.08998 * 109.46561 * 70.00550 * 18 8 7 39 39 H 1.08999 * 109.46715 * 310.00518 * 18 8 7 40 40 H 1.08996 * 109.46931 * 59.99885 * 19 18 8 41 41 H 1.09008 * 109.46928 * 300.00076 * 19 18 8 42 42 H 1.08993 * 109.51000 * 297.54510 * 21 20 19 43 43 H 1.08999 * 109.50440 * 57.67824 * 21 20 19 44 44 H 1.09000 * 109.50690 * 296.91718 * 22 21 20 45 45 H 1.08997 * 109.54509 * 176.81044 * 22 21 20 46 46 H 1.09011 * 109.50722 * 298.73500 * 24 23 22 47 47 H 1.09004 * 109.54475 * 178.62834 * 24 23 22 48 48 H 1.09003 * 109.50651 * 302.32281 * 25 20 19 49 49 H 1.08996 * 109.51075 * 62.41366 * 25 20 19 50 50 H 1.08000 * 119.65368 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2954 0.0005 5 6 4.0181 2.5519 -0.0047 6 6 3.2078 3.6721 0.0011 7 6 3.8342 5.0427 0.0016 8 7 3.9285 5.5387 -1.3779 9 6 4.9680 4.8193 -2.1261 10 6 6.3029 5.0282 -1.4585 11 1 6.3614 5.5697 -0.5259 12 6 7.4495 4.5281 -2.0384 13 7 7.3782 3.8683 -3.1738 14 14 9.1042 4.7877 -1.2113 15 1 9.3774 3.6589 -0.2859 16 1 10.1695 4.8501 -2.2441 17 1 9.0810 6.0604 -0.4465 18 6 4.1704 6.9875 -1.4012 19 6 4.0151 7.5075 -2.8317 20 7 4.2575 8.9561 -2.8550 21 6 3.2133 9.6771 -2.1126 22 6 3.5363 11.1736 -2.1116 23 8 3.6550 11.6314 -3.4613 24 6 4.6633 10.9511 -4.2134 25 6 4.3517 9.4523 -4.2357 26 7 1.8943 3.5574 0.0006 27 6 1.3001 2.3804 0.0001 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0432 0.4030 0.0004 32 1 5.0932 2.6553 -0.0088 33 1 4.8323 4.9859 0.4362 34 1 3.2196 5.7229 0.5910 35 1 4.7329 3.7551 -2.1430 36 1 5.0091 5.1986 -3.1471 37 1 8.1848 3.5168 -3.5820 38 1 5.1808 7.1928 -1.0476 39 1 3.4501 7.4864 -0.7529 40 1 3.0047 7.3021 -3.1852 41 1 4.7354 7.0084 -3.4799 42 1 2.2477 9.5135 -2.5909 43 1 3.1783 9.3117 -1.0862 44 1 4.4761 11.3428 -1.5859 45 1 2.7362 11.7190 -1.6112 46 1 5.6359 11.1139 -3.7488 47 1 4.6785 11.3349 -5.2336 48 1 5.1478 8.9229 -4.7592 49 1 3.4046 9.2845 -4.7482 50 1 0.2215 2.3264 -0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271833835.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:26 Heat of formation + Delta-G solvation = -49.032597 kcal Electronic energy + Delta-G solvation = -29518.890639 eV Core-core repulsion = 25546.143787 eV Total energy + Delta-G solvation = -3972.746852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.61004 -40.55557 -39.45526 -38.35922 -36.53821 -34.51857 -33.35310 -32.44987 -32.09899 -30.40156 -29.10267 -28.30263 -27.26552 -26.01553 -24.95399 -24.58540 -23.90599 -22.56139 -21.43452 -21.14818 -19.07765 -18.53747 -17.92832 -17.67064 -17.10747 -17.00012 -16.79538 -16.57214 -16.41651 -16.03101 -15.98419 -15.74745 -15.39998 -15.23125 -14.99514 -14.56605 -14.47335 -14.31011 -13.98526 -13.81506 -13.52092 -13.22779 -13.07061 -12.77297 -12.76572 -12.68706 -12.46925 -12.41840 -12.32159 -12.28260 -12.04702 -11.94288 -11.79578 -11.50442 -11.30052 -10.65235 -10.64421 -10.50797 -10.35443 -9.37139 -9.32022 -8.95373 -8.08817 -6.26079 0.18809 0.32488 1.38902 1.41594 1.50128 2.27244 2.41433 2.60421 2.84560 2.98900 3.17362 3.45822 3.62161 3.71033 3.90592 3.93048 3.99009 4.05424 4.06658 4.20800 4.28975 4.36498 4.38669 4.41752 4.46603 4.49154 4.58676 4.62933 4.69039 4.70722 4.75916 4.77061 4.83810 4.88988 4.91838 5.00883 5.01425 5.04047 5.20485 5.22307 5.32949 5.43217 5.59856 5.80481 5.94443 6.02423 6.11463 6.18419 6.27394 6.31628 6.52213 6.92972 7.07458 7.44316 8.93424 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008952 B = 0.003483 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.169183 B = 8037.920631 C =10458.900759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.326 6.326 3 C 0.070 3.930 4 C -0.120 4.120 5 C -0.119 4.119 6 C 0.101 3.899 7 C 0.117 3.883 8 N -0.537 5.537 9 C 0.204 3.796 10 C -0.541 4.541 11 H 0.059 0.941 12 C 0.021 3.979 13 N -0.924 5.924 14 Si 0.945 3.055 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.269 1.269 18 C 0.079 3.921 19 C 0.080 3.920 20 N -0.545 5.545 21 C 0.016 3.984 22 C 0.065 3.935 23 O -0.401 6.401 24 C 0.069 3.931 25 C 0.018 3.982 26 N -0.455 5.455 27 C 0.012 3.988 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.125 0.875 31 H 0.151 0.849 32 H 0.132 0.868 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.004 0.996 36 H 0.006 0.994 37 H 0.262 0.738 38 H 0.032 0.968 39 H 0.074 0.926 40 H 0.029 0.971 41 H 0.053 0.947 42 H 0.037 0.963 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.120 0.880 46 H 0.059 0.941 47 H 0.118 0.882 48 H 0.080 0.920 49 H 0.037 0.963 50 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.004 3.475 5.120 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C 0.022 3.978 4 C -0.147 4.147 5 C -0.139 4.139 6 C -0.037 4.037 7 C -0.012 4.012 8 N -0.261 5.261 9 C 0.078 3.922 10 C -0.580 4.580 11 H 0.077 0.923 12 C -0.179 4.179 13 N -0.564 5.564 14 Si 0.771 3.229 15 H -0.199 1.199 16 H -0.214 1.214 17 H -0.193 1.193 18 C -0.049 4.049 19 C -0.048 4.048 20 N -0.271 5.271 21 C -0.112 4.112 22 C -0.011 4.011 23 O -0.320 6.320 24 C -0.008 4.008 25 C -0.110 4.110 26 N -0.165 5.165 27 C -0.146 4.146 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.143 0.857 31 H 0.168 0.832 32 H 0.150 0.850 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.022 0.978 36 H 0.024 0.976 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.138 0.862 46 H 0.077 0.923 47 H 0.136 0.864 48 H 0.099 0.901 49 H 0.056 0.944 50 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -12.462 4.091 4.913 14.006 hybrid contribution 1.744 -1.298 -0.028 2.174 sum -10.717 2.793 4.885 12.105 Atomic orbital electron populations 1.23432 0.76004 1.06041 1.02530 1.86049 1.23816 1.25411 1.88581 1.20038 0.92976 0.86328 0.98444 1.21082 0.92508 0.98726 1.02359 1.21976 1.01730 0.92278 0.97943 1.21013 0.88864 0.95797 0.98015 1.20703 0.98444 0.91276 0.90754 1.62317 1.47338 1.03843 1.12618 1.19407 0.87218 0.92741 0.92850 1.21844 0.93353 1.34929 1.07888 0.92283 1.25628 1.02209 0.94836 0.95206 1.70065 1.29578 1.37817 1.18979 0.85749 0.80054 0.78748 0.78323 1.19949 1.21363 1.19322 1.21757 0.99585 0.87592 0.95963 1.21784 0.98606 0.86669 0.97712 1.62127 1.46827 1.03785 1.14335 1.22893 0.92595 0.95605 1.00110 1.22792 1.02772 0.92349 0.83210 1.87925 1.58058 1.61369 1.24676 1.22725 0.91131 0.89301 0.97633 1.22799 1.01162 0.97688 0.89387 1.67321 1.11725 1.27316 1.10119 1.23263 1.01473 0.86608 1.03286 0.91139 0.91805 0.85708 0.83163 0.84968 0.92949 0.89715 0.97777 0.97572 0.92921 0.94950 0.90726 0.95279 0.92846 0.94497 0.88840 0.92180 0.86185 0.92256 0.86391 0.90149 0.94434 0.79940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.82 113.37 1.11 1.32 16 2 O -0.33 -8.14 10.51 -92.62 -0.97 -9.11 16 3 C 0.07 2.08 6.71 22.60 0.15 2.23 16 4 C -0.12 -3.97 10.13 22.56 0.23 -3.74 16 5 C -0.12 -4.47 8.44 22.34 0.19 -4.28 16 6 C 0.10 3.87 5.84 42.56 0.25 4.12 16 7 C 0.12 4.51 5.12 85.56 0.44 4.95 16 8 N -0.54 -22.77 4.66 -905.38 -4.22 -26.98 16 9 C 0.20 10.35 4.70 85.56 0.40 10.75 16 10 C -0.54 -28.32 7.34 25.60 0.19 -28.13 16 11 H 0.06 3.04 5.95 -2.91 -0.02 3.02 16 12 C 0.02 1.12 5.46 84.65 0.46 1.58 16 13 N -0.92 -53.53 13.29 21.45 0.28 -53.24 16 14 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 16 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 C 0.08 3.02 4.71 86.30 0.41 3.42 16 19 C 0.08 2.97 4.89 86.30 0.42 3.39 16 20 N -0.54 -17.15 4.73 -895.24 -4.23 -21.38 16 21 C 0.02 0.41 5.44 86.31 0.47 0.88 16 22 C 0.07 1.44 7.01 72.02 0.50 1.95 16 23 O -0.40 -10.15 10.83 -148.98 -1.61 -11.76 16 24 C 0.07 1.61 7.01 72.02 0.50 2.12 16 25 C 0.02 0.50 5.64 86.31 0.49 0.99 16 26 N -0.45 -16.23 10.27 -183.49 -1.88 -18.11 16 27 C 0.01 0.36 10.22 84.80 0.87 1.23 16 28 H 0.07 0.85 7.68 -2.39 -0.02 0.83 16 29 H 0.06 0.87 7.68 -2.38 -0.02 0.85 16 30 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.15 4.37 8.06 -2.91 -0.02 4.35 16 32 H 0.13 5.35 8.06 -2.91 -0.02 5.32 16 33 H 0.05 2.14 6.02 -2.39 -0.01 2.13 16 34 H 0.08 2.94 7.81 -2.39 -0.02 2.92 16 35 H 0.00 0.23 6.55 -2.39 -0.02 0.21 16 36 H 0.01 0.35 6.32 -2.39 -0.02 0.33 16 37 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 38 H 0.03 1.38 6.62 -2.39 -0.02 1.36 16 39 H 0.07 2.47 6.24 -2.39 -0.01 2.45 16 40 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 41 H 0.05 2.33 6.38 -2.38 -0.02 2.31 16 42 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 2.29 6.38 -2.39 -0.02 2.27 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 47 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 48 H 0.08 2.33 8.09 -2.39 -0.02 2.31 16 49 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.18 3.96 6.32 -2.91 -0.02 3.94 16 Total: -1.00 -65.84 391.18 -2.59 -68.43 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.93 Total: 24.54 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 7.08 Total: 2.78 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -10.05 Total: -119.72 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -2.59 Total: -20.87 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -65.84 -2.59 -68.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271833835.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.399 kcal (2) G-P(sol) polarization free energy of solvation -65.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds