Wall clock time and date at job start Tue Mar 31 2020 18:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00275 * 2 1 4 4 C 1.46905 * 110.99705 * 123.95390 * 2 1 3 5 5 C 1.52997 * 109.47150 * 66.04695 * 4 2 1 6 6 O 1.42898 * 109.47319 * 64.99949 * 5 4 2 7 7 C 1.35900 * 117.00172 * 179.97438 * 6 5 4 8 8 C 1.38746 * 120.05467 * 359.72752 * 7 6 5 9 9 C 1.38131 * 119.94707 * 179.69741 * 8 7 6 10 10 C 1.38290 * 120.04957 * 0.59675 * 9 8 7 11 11 C 1.38250 * 120.11062 * 359.67603 * 10 9 8 12 12 C 1.50699 * 119.96557 * 180.02562 * 11 10 9 13 13 N 1.46497 * 109.47121 * 269.97217 * 12 11 10 14 14 C 1.34783 * 120.00182 * 180.02562 * 13 12 11 15 15 O 1.21588 * 119.99750 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00236 * 180.02562 * 14 13 12 17 17 C 1.46495 * 119.99773 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46950 * 180.02562 * 17 16 14 19 19 C 1.50692 * 109.47397 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99957 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00206 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00174 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00107 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46785 * 59.99925 * 23 21 19 25 25 H 1.48500 * 109.47013 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46855 * 300.00391 * 23 21 19 27 27 C 1.38162 * 120.05723 * 0.02573 * 11 10 9 28 28 H 1.08999 * 109.47085 * 296.04836 * 1 2 3 29 29 H 1.09006 * 109.47338 * 56.04452 * 1 2 3 30 30 H 1.08998 * 109.47507 * 176.04779 * 1 2 3 31 31 H 1.08993 * 109.47370 * 183.95447 * 3 2 1 32 32 H 1.08998 * 109.47117 * 303.95560 * 3 2 1 33 33 H 1.09007 * 109.46901 * 63.94976 * 3 2 1 34 34 H 1.09001 * 109.47063 * 306.04092 * 4 2 1 35 35 H 1.09004 * 109.46681 * 186.04717 * 4 2 1 36 36 H 1.09002 * 109.47153 * 304.99641 * 5 4 2 37 37 H 1.09001 * 109.46832 * 184.99832 * 5 4 2 38 38 H 1.08010 * 120.02919 * 359.97292 * 8 7 6 39 39 H 1.07993 * 119.97567 * 180.29505 * 9 8 7 40 40 H 1.07997 * 119.94208 * 179.70200 * 10 9 8 41 41 H 1.08993 * 109.47352 * 29.97953 * 12 11 10 42 42 H 1.09001 * 109.46764 * 149.97894 * 12 11 10 43 43 H 0.97001 * 120.00247 * 0.02562 * 13 12 11 44 44 H 0.97002 * 119.99362 * 0.02562 * 16 14 13 45 45 H 1.08998 * 109.47023 * 299.99505 * 17 16 14 46 46 H 1.08992 * 109.47431 * 60.00049 * 17 16 14 47 47 H 1.09004 * 109.46865 * 300.00265 * 18 17 16 48 48 H 1.09002 * 109.47174 * 59.99688 * 18 17 16 49 49 H 0.96996 * 120.00529 * 179.97438 * 22 21 19 50 50 H 1.07998 * 120.02891 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9704 6 8 2.2955 -2.7696 -0.1799 7 6 2.0781 -4.0789 -0.4720 8 6 1.2472 -4.8424 0.3353 9 6 1.0229 -6.1713 0.0327 10 6 1.6355 -6.7442 -1.0668 11 6 2.4684 -5.9871 -1.8695 12 6 3.1339 -6.6145 -3.0672 13 7 4.4292 -7.1718 -2.6699 14 6 5.2072 -7.7862 -3.5831 15 8 4.8341 -7.8775 -4.7367 16 7 6.3986 -8.2994 -3.2175 17 6 7.2443 -8.9667 -4.2103 18 6 8.5301 -9.4544 -3.5396 19 6 9.3999 -10.1413 -4.5605 20 1 9.0689 -10.2217 -5.5854 21 6 10.6187 -10.6664 -4.1865 22 7 11.0220 -10.5682 -2.9386 23 14 11.6972 -11.5174 -5.4523 24 1 12.0361 -10.5612 -6.5369 25 1 12.9451 -11.9908 -4.8013 26 1 10.9674 -12.6771 -6.0250 27 6 2.6911 -4.6558 -1.5746 28 1 -0.3633 0.4513 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0827 1.3432 -0.0709 32 1 1.5899 1.9163 -0.8524 33 1 1.7043 1.8724 0.9233 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6611 1.1757 36 1 0.5531 -2.3389 0.8433 37 1 1.9438 -2.7963 1.8558 38 1 0.7725 -4.3967 1.1971 39 1 0.3724 -6.7647 0.6580 40 1 1.4627 -7.7847 -1.2990 41 1 2.5008 -7.4104 -3.4593 42 1 3.2848 -5.8577 -3.8369 43 1 4.7270 -7.0987 -1.7497 44 1 6.6960 -8.2268 -2.2971 45 1 6.7088 -9.8179 -4.6304 46 1 7.4930 -8.2649 -5.0063 47 1 9.0658 -8.6033 -3.1189 48 1 8.2811 -10.1563 -2.7437 49 1 11.8792 -10.9378 -2.6754 50 1 3.3415 -4.0647 -2.2022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273204881.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:59 Heat of formation + Delta-G solvation = -43.464893 kcal Electronic energy + Delta-G solvation = -27268.379334 eV Core-core repulsion = 23295.873915 eV Total energy + Delta-G solvation = -3972.505419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.54940 -39.51021 -38.46696 -37.26635 -35.08922 -34.33651 -32.79685 -31.60843 -31.22014 -29.60115 -29.31063 -28.10644 -26.37828 -24.91649 -24.27535 -22.79090 -22.16486 -21.04454 -20.75683 -20.47802 -18.53561 -17.66329 -16.87903 -16.53067 -16.35056 -16.28949 -15.79755 -15.55553 -15.32022 -15.10211 -14.97166 -14.52363 -14.43318 -13.93919 -13.66468 -13.61095 -13.32648 -13.11821 -13.06887 -12.82994 -12.74724 -12.34796 -12.24686 -12.23149 -12.09393 -11.77876 -11.68960 -11.16881 -11.14730 -11.01012 -10.97361 -10.61192 -10.25806 -9.93857 -9.53616 -9.27157 -9.12624 -8.96072 -8.86831 -8.44380 -8.43030 -8.18049 -6.04973 -4.07489 0.93999 1.19862 2.82410 3.10599 3.34738 3.38160 3.38602 3.41989 3.62602 3.66493 4.28104 4.43980 4.45064 4.45741 4.57982 4.62531 4.75784 4.79204 4.81230 4.83409 4.86117 5.02749 5.06748 5.09493 5.13685 5.23591 5.27473 5.31992 5.42228 5.42629 5.51995 5.70027 5.80420 6.01612 6.14513 6.34247 6.36500 6.42483 6.45893 6.46145 6.51477 6.64175 6.83624 7.06974 7.16372 7.31084 7.62074 7.68672 7.94342 8.30936 8.50308 8.97358 9.06554 9.56960 11.06642 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016743 B = 0.001596 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.928586 B =17538.187975 C =18303.284724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.541 5.541 3 C 0.025 3.975 4 C 0.054 3.946 5 C 0.063 3.937 6 O -0.297 6.297 7 C 0.129 3.871 8 C -0.207 4.207 9 C -0.082 4.082 10 C -0.139 4.139 11 C -0.064 4.064 12 C 0.182 3.818 13 N -0.749 5.749 14 C 0.699 3.301 15 O -0.599 6.599 16 N -0.738 5.738 17 C 0.140 3.860 18 C 0.013 3.987 19 C -0.521 4.521 20 H 0.059 0.941 21 C 0.059 3.941 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C -0.131 4.131 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.024 0.976 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.395 0.605 44 H 0.393 0.607 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.022 0.978 48 H 0.022 0.978 49 H 0.262 0.738 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.761 20.752 13.865 35.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.265 5.265 3 C -0.123 4.123 4 C -0.074 4.074 5 C -0.013 4.013 6 O -0.210 6.210 7 C 0.084 3.916 8 C -0.226 4.226 9 C -0.100 4.100 10 C -0.158 4.158 11 C -0.064 4.064 12 C 0.058 3.942 13 N -0.406 5.406 14 C 0.399 3.601 15 O -0.478 6.478 16 N -0.392 5.392 17 C 0.017 3.983 18 C -0.025 4.025 19 C -0.560 4.560 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.725 3.275 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.201 1.201 27 C -0.150 4.150 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.229 0.771 44 H 0.226 0.774 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.040 0.960 48 H 0.040 0.960 49 H 0.072 0.928 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -24.650 20.525 12.337 34.367 hybrid contribution 0.430 -0.040 1.323 1.392 sum -24.220 20.485 13.660 34.537 Atomic orbital electron populations 1.22477 0.87372 1.02421 1.00626 1.61925 1.07912 1.14012 1.42616 1.22396 1.01132 0.88300 1.00518 1.22203 1.01907 0.91325 0.91983 1.22851 0.97012 0.93960 0.87456 1.86190 1.67106 1.21893 1.45809 1.18985 0.94884 0.83396 0.94372 1.21253 1.03576 0.95846 1.01971 1.20924 0.98323 0.94161 0.96623 1.21037 0.98780 1.00212 0.95763 1.19726 0.97216 0.92967 0.96530 1.19945 0.83412 0.97739 0.93153 1.45133 1.20111 1.63232 1.12158 1.16053 0.80825 0.78584 0.84667 1.90889 1.74238 1.64768 1.17870 1.45527 1.18425 1.61285 1.13960 1.21583 0.91327 0.95114 0.90231 1.19326 0.90005 0.96592 0.96574 1.21024 1.02582 1.36744 0.95608 0.92258 1.24992 0.97797 0.96090 0.95400 1.69944 1.21178 1.45854 1.16397 0.86571 0.79591 0.79966 0.81386 1.20113 1.21292 1.20119 1.20372 1.02556 0.94743 0.97341 0.95646 0.91057 0.91252 0.91031 0.91114 0.95711 0.92602 0.89293 0.91908 0.91569 0.85788 0.85721 0.85564 0.90679 0.90741 0.77119 0.77385 0.92796 0.92782 0.95960 0.95971 0.92847 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.33 60.06 0.56 0.67 16 2 N -0.54 -3.77 4.97 -251.26 -1.25 -5.01 16 3 C 0.02 0.13 9.57 60.07 0.57 0.71 16 4 C 0.05 0.31 5.34 -3.82 -0.02 0.29 16 5 C 0.06 0.40 4.80 37.16 0.18 0.58 16 6 O -0.30 -2.91 10.08 -19.43 -0.20 -3.10 16 7 C 0.13 1.28 6.69 -39.22 -0.26 1.01 16 8 C -0.21 -1.71 9.04 -39.43 -0.36 -2.07 16 9 C -0.08 -0.66 10.04 -39.60 -0.40 -1.06 16 10 C -0.14 -1.27 9.70 -39.56 -0.38 -1.65 16 11 C -0.06 -0.65 5.25 -104.65 -0.55 -1.20 16 12 C 0.18 2.18 5.80 -5.20 -0.03 2.15 16 13 N -0.75 -10.10 5.55 -66.42 -0.37 -10.47 16 14 C 0.70 12.69 8.57 -86.91 -0.74 11.95 16 15 O -0.60 -13.26 16.34 5.29 0.09 -13.17 16 16 N -0.74 -13.55 5.56 -65.23 -0.36 -13.91 16 17 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 18 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 19 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 20 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 23 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C -0.13 -1.38 9.64 -39.43 -0.38 -1.76 16 28 H 0.03 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.07 0.39 6.37 -51.93 -0.33 0.06 16 31 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 32 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 33 H 0.02 0.11 8.14 -51.92 -0.42 -0.31 16 34 H 0.06 0.23 8.12 -51.93 -0.42 -0.19 16 35 H 0.09 0.54 8.06 -51.93 -0.42 0.12 16 36 H 0.06 0.35 5.87 -51.93 -0.30 0.05 16 37 H 0.07 0.33 7.65 -51.93 -0.40 -0.07 16 38 H 0.12 0.76 6.30 -52.48 -0.33 0.43 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 42 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 43 H 0.40 4.45 8.48 -40.82 -0.35 4.10 16 44 H 0.39 6.23 8.49 -40.82 -0.35 5.89 16 45 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 50 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 414.61 15.07 6.25 6.25 Total: -1.00 -34.17 414.61 -10.86 -45.03 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -8.35 Total: 3.99 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.39 Total: -0.54 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -1.24 Total: -55.05 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.11 Total: -16.27 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.17 -10.86 -45.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273204881.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.562 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds