Wall clock time and date at job start Tue Mar 31 2020 18:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35899 * 116.99750 * 2 1 4 4 C 1.38749 * 120.05804 * 0.02783 * 3 2 1 5 5 C 1.38126 * 119.94582 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05276 * 359.74620 * 5 4 3 7 7 C 1.38248 * 120.11313 * 0.51063 * 6 5 4 8 8 C 1.50695 * 119.97257 * 179.76898 * 7 6 5 9 9 H 1.09003 * 109.46911 * 208.45519 * 8 7 6 10 10 C 1.53005 * 109.47294 * 88.45939 * 8 7 6 11 11 N 1.46499 * 109.46931 * 175.73901 * 10 8 7 12 12 C 1.34776 * 119.99790 * 174.12020 * 11 10 8 13 13 O 1.21588 * 119.99973 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00079 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99772 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.46700 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.46611 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00181 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99461 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00134 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99707 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47007 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46877 * 120.00641 * 21 19 17 24 24 H 1.48504 * 109.46876 * 239.99989 * 21 19 17 25 25 N 1.46897 * 109.47198 * 328.45371 * 8 7 6 26 26 C 1.46901 * 110.99635 * 92.68089 * 25 8 7 27 27 C 1.46904 * 111.00297 * 216.63116 * 25 8 7 28 28 C 1.38169 * 120.05185 * 359.48542 * 7 6 5 29 29 H 1.08999 * 109.47191 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46273 * 299.99568 * 1 2 3 31 31 H 1.08992 * 109.47597 * 59.99431 * 1 2 3 32 32 H 1.08000 * 120.03007 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.97305 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.94646 * 180.27278 * 6 5 4 35 35 H 1.08999 * 109.46424 * 295.74014 * 10 8 7 36 36 H 1.08999 * 109.47086 * 55.73921 * 10 8 7 37 37 H 0.96993 * 120.00120 * 354.12240 * 11 10 8 38 38 H 0.96996 * 119.99798 * 359.97438 * 14 12 11 39 39 H 1.08995 * 109.47019 * 299.99509 * 15 14 12 40 40 H 1.08998 * 109.47019 * 60.00234 * 15 14 12 41 41 H 1.08995 * 109.47391 * 299.99780 * 16 15 14 42 42 H 1.09006 * 109.46842 * 60.00240 * 16 15 14 43 43 H 0.97001 * 120.00265 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.47600 * 70.12881 * 26 25 8 45 45 H 1.09003 * 109.47267 * 190.12736 * 26 25 8 46 46 H 1.09004 * 109.47536 * 310.12441 * 26 25 8 47 47 H 1.08997 * 109.46805 * 52.17541 * 27 25 8 48 48 H 1.09003 * 109.47101 * 172.17550 * 27 25 8 49 49 H 1.08996 * 109.47194 * 292.17609 * 27 25 8 50 50 H 1.07996 * 120.02526 * 180.27505 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0006 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0064 7 6 4.0561 2.5171 0.0004 8 6 5.5608 2.5982 0.0009 9 1 5.9722 1.7181 -0.4933 10 6 6.0680 2.6570 1.4433 11 7 7.5328 2.6332 1.4472 12 6 8.2063 2.7956 2.6032 13 8 7.5981 2.9614 3.6430 14 7 9.5539 2.7743 2.6068 15 6 10.2859 2.9503 3.8636 16 6 11.7901 2.8845 3.5911 17 6 12.5431 3.0662 4.8838 18 1 12.0029 3.2134 5.8072 19 6 13.9217 3.0434 4.8875 20 7 14.5794 2.8636 3.7630 21 14 14.8551 3.2679 6.4900 22 1 13.8899 3.4506 7.6035 23 1 15.6884 2.0666 6.7498 24 1 15.7290 4.4644 6.3902 25 7 5.9863 3.8068 -0.7174 26 6 6.1615 4.9346 0.2075 27 6 7.2148 3.5588 -1.4838 28 6 3.4311 1.2848 0.0000 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 0.2128 2.3204 0.0006 33 1 1.3340 4.5114 0.0020 34 1 3.7923 4.6380 0.0112 35 1 5.7182 3.5757 1.9142 36 1 5.6892 1.7978 1.9969 37 1 8.0179 2.5006 0.6178 38 1 10.0390 2.6416 1.7774 39 1 10.0368 3.9191 4.2965 40 1 10.0082 2.1589 4.5597 41 1 12.0389 1.9156 3.1583 42 1 12.0681 3.6757 2.8947 43 1 15.5493 2.8479 3.7655 44 1 7.0374 4.7595 0.8323 45 1 6.2995 5.8537 -0.3622 46 1 5.2777 5.0277 0.8387 47 1 7.0804 2.6770 -2.1102 48 1 7.4310 4.4221 -2.1132 49 1 8.0445 3.3933 -0.7966 50 1 4.0207 0.3800 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273225795.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:31 Heat of formation + Delta-G solvation = -26.165224 kcal Electronic energy + Delta-G solvation = -28595.569220 eV Core-core repulsion = 24623.813971 eV Total energy + Delta-G solvation = -3971.755249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.74945 -39.91035 -38.73366 -37.08464 -34.91201 -33.88644 -32.83462 -32.21613 -30.70445 -29.70354 -28.20393 -28.13759 -27.34771 -25.17705 -24.08959 -22.74161 -22.45235 -21.06587 -20.71162 -20.36310 -18.41138 -17.67032 -16.83195 -16.44469 -16.43307 -16.14836 -16.00273 -15.93985 -15.15592 -14.95743 -14.91169 -14.48750 -14.02796 -13.86229 -13.84386 -13.65496 -13.44035 -13.26726 -13.01336 -12.79139 -12.39783 -12.34101 -12.26947 -12.00510 -11.95186 -11.67857 -11.33403 -11.18700 -11.17832 -11.05989 -11.03712 -10.61977 -10.33626 -9.97378 -9.57835 -9.25793 -9.20117 -9.07310 -8.59106 -8.47213 -8.42084 -8.25144 -6.09797 -4.12294 1.02844 1.24319 2.88419 2.99195 3.28323 3.35998 3.41474 3.46287 3.55976 3.71034 4.36356 4.45822 4.50585 4.52835 4.65989 4.72481 4.77725 4.81433 4.83411 4.93354 5.08954 5.13875 5.14950 5.25144 5.27476 5.31495 5.33308 5.45928 5.56511 5.63399 5.67145 5.72922 5.83223 6.03584 6.22729 6.27503 6.32030 6.38772 6.47181 6.53253 6.67937 6.75199 6.76555 6.97517 7.11164 7.16761 7.55710 7.62295 7.89450 8.24539 8.39179 8.91855 8.97176 9.52554 11.01875 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021877 B = 0.001889 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.595564 B =14822.272587 C =15377.795804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.124 3.876 4 C -0.209 4.209 5 C -0.084 4.084 6 C -0.131 4.131 7 C -0.028 4.028 8 C 0.109 3.891 9 H 0.094 0.906 10 C 0.116 3.884 11 N -0.755 5.755 12 C 0.698 3.302 13 O -0.595 6.595 14 N -0.738 5.738 15 C 0.140 3.860 16 C 0.013 3.987 17 C -0.520 4.520 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 N -0.533 5.533 26 C 0.008 3.992 27 C 0.020 3.980 28 C -0.144 4.144 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.133 0.867 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.391 0.609 38 H 0.392 0.608 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.261 0.739 44 H 0.046 0.954 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.030 0.970 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.978 -1.005 -14.885 30.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.228 4.228 5 C -0.102 4.102 6 C -0.149 4.149 7 C -0.029 4.029 8 C 0.000 4.000 9 H 0.112 0.888 10 C -0.010 4.010 11 N -0.415 5.415 12 C 0.398 3.602 13 O -0.473 6.473 14 N -0.392 5.392 15 C 0.018 3.982 16 C -0.025 4.025 17 C -0.559 4.559 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.209 1.209 25 N -0.256 5.256 26 C -0.140 4.140 27 C -0.128 4.128 28 C -0.164 4.164 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.150 0.850 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.227 0.773 38 H 0.225 0.775 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.048 0.952 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -27.618 -0.924 -14.280 31.105 hybrid contribution 1.407 -0.129 0.531 1.509 sum -26.211 -1.053 -13.749 29.617 Atomic orbital electron populations 1.23041 0.78451 1.03891 1.01298 1.86072 1.21318 1.27011 1.88852 1.18899 0.92145 0.84129 0.96900 1.21224 0.99875 0.92517 1.09195 1.20952 0.94691 0.96876 0.97659 1.21079 0.93205 0.98801 1.01842 1.19261 0.93770 0.92365 0.97500 1.20880 0.91927 0.94249 0.92929 0.88825 1.21795 0.79431 1.03666 0.96065 1.45394 1.06575 1.80300 1.09231 1.16060 0.82356 0.78226 0.83588 1.90899 1.68062 1.57378 1.30988 1.45547 1.03908 1.77003 1.12722 1.21598 0.93564 1.00317 0.82768 1.19333 0.87307 0.97788 0.98061 1.21090 0.91261 1.49824 0.93690 0.92152 1.25000 0.97769 0.95036 0.96536 1.69964 1.07626 1.49884 1.25855 0.86453 0.79806 0.77716 0.83576 1.19564 1.20950 1.20943 1.62135 1.32578 1.04669 1.26232 1.22723 1.01847 0.93489 0.95922 1.22582 0.89896 1.02740 0.97622 1.20204 0.91439 0.98053 1.06662 0.88294 0.92662 0.92717 0.85743 0.85849 0.84973 0.90162 0.91311 0.77286 0.77514 0.92770 0.92769 0.95974 0.95989 0.92924 0.93539 0.91300 0.90878 0.91106 0.90748 0.95192 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.03 10.50 -19.42 -0.20 -3.24 16 3 C 0.12 1.23 6.69 -39.22 -0.26 0.97 16 4 C -0.21 -1.78 9.04 -39.43 -0.36 -2.14 16 5 C -0.08 -0.70 10.04 -39.60 -0.40 -1.10 16 6 C -0.13 -1.21 8.98 -39.56 -0.36 -1.57 16 7 C -0.03 -0.27 5.01 -104.65 -0.52 -0.79 16 8 C 0.11 1.00 2.26 -68.87 -0.16 0.84 16 9 H 0.09 0.78 7.45 -51.93 -0.39 0.39 16 10 C 0.12 1.35 4.35 -4.04 -0.02 1.33 16 11 N -0.76 -9.54 3.98 -65.22 -0.26 -9.80 16 12 C 0.70 12.23 8.57 -86.92 -0.74 11.49 16 13 O -0.59 -12.91 16.33 5.29 0.09 -12.83 16 14 N -0.74 -13.09 5.56 -65.22 -0.36 -13.45 16 15 C 0.14 3.04 5.61 -4.04 -0.02 3.01 16 16 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 17 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 18 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 21 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 N -0.53 -4.64 4.29 -244.58 -1.05 -5.69 16 26 C 0.01 0.07 7.45 60.07 0.45 0.52 16 27 C 0.02 0.15 9.15 60.07 0.55 0.70 16 28 C -0.14 -1.44 9.64 -39.43 -0.38 -1.82 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 32 H 0.12 0.79 6.30 -52.49 -0.33 0.46 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.13 1.15 5.21 -52.49 -0.27 0.87 16 35 H 0.08 1.03 5.97 -51.93 -0.31 0.72 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.39 4.02 5.76 -40.82 -0.24 3.79 16 38 H 0.39 5.97 8.49 -40.82 -0.35 5.62 16 39 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 44 H 0.05 0.52 6.12 -51.93 -0.32 0.20 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.67 5.12 -51.93 -0.27 0.40 16 47 H 0.07 0.47 7.86 -51.93 -0.41 0.06 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.03 0.23 5.64 -51.93 -0.29 -0.06 16 50 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 397.60 15.07 5.99 5.99 Total: -1.00 -33.56 397.60 -9.59 -43.15 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -7.73 Total: 5.32 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.78 Total: -0.50 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.93 Total: -54.32 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.12 Total: -16.06 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.56 -9.59 -43.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273225795.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.987 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds