Wall clock time and date at job start Tue Mar 31 2020 18:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35899 * 116.99750 * 2 1 4 4 C 1.38749 * 120.05804 * 0.02783 * 3 2 1 5 5 C 1.38126 * 119.94582 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05276 * 359.74620 * 5 4 3 7 7 C 1.38248 * 120.11313 * 0.51063 * 6 5 4 8 8 C 1.50695 * 119.97257 * 179.76898 * 7 6 5 9 9 H 1.09003 * 109.46911 * 208.45519 * 8 7 6 10 10 C 1.53005 * 109.47294 * 88.45939 * 8 7 6 11 11 N 1.46499 * 109.46931 * 175.73901 * 10 8 7 12 12 C 1.34776 * 119.99790 * 174.12020 * 11 10 8 13 13 O 1.21588 * 119.99973 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00079 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99772 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.46700 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.46611 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00181 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99461 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00134 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99707 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47007 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46877 * 120.00641 * 21 19 17 24 24 H 1.48504 * 109.46876 * 239.99989 * 21 19 17 25 25 N 1.46897 * 109.47198 * 328.45371 * 8 7 6 26 26 C 1.46901 * 110.99635 * 92.68089 * 25 8 7 27 27 C 1.46904 * 111.00297 * 216.63116 * 25 8 7 28 28 C 1.38169 * 120.05185 * 359.48542 * 7 6 5 29 29 H 1.08999 * 109.47191 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46273 * 299.99568 * 1 2 3 31 31 H 1.08992 * 109.47597 * 59.99431 * 1 2 3 32 32 H 1.08000 * 120.03007 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.97305 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.94646 * 180.27278 * 6 5 4 35 35 H 1.08999 * 109.46424 * 295.74014 * 10 8 7 36 36 H 1.08999 * 109.47086 * 55.73921 * 10 8 7 37 37 H 0.96993 * 120.00120 * 354.12240 * 11 10 8 38 38 H 0.96996 * 119.99798 * 359.97438 * 14 12 11 39 39 H 1.08995 * 109.47019 * 299.99509 * 15 14 12 40 40 H 1.08998 * 109.47019 * 60.00234 * 15 14 12 41 41 H 1.08995 * 109.47391 * 299.99780 * 16 15 14 42 42 H 1.09006 * 109.46842 * 60.00240 * 16 15 14 43 43 H 0.97001 * 120.00265 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.47600 * 70.12881 * 26 25 8 45 45 H 1.09003 * 109.47267 * 190.12736 * 26 25 8 46 46 H 1.09004 * 109.47536 * 310.12441 * 26 25 8 47 47 H 1.08997 * 109.46805 * 52.17541 * 27 25 8 48 48 H 1.09003 * 109.47101 * 172.17550 * 27 25 8 49 49 H 1.08996 * 109.47194 * 292.17609 * 27 25 8 50 50 H 1.07996 * 120.02526 * 180.27505 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0006 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0064 7 6 4.0561 2.5171 0.0004 8 6 5.5608 2.5982 0.0009 9 1 5.9722 1.7181 -0.4933 10 6 6.0680 2.6570 1.4433 11 7 7.5328 2.6332 1.4472 12 6 8.2063 2.7956 2.6032 13 8 7.5981 2.9614 3.6430 14 7 9.5539 2.7743 2.6068 15 6 10.2859 2.9503 3.8636 16 6 11.7901 2.8845 3.5911 17 6 12.5431 3.0662 4.8838 18 1 12.0029 3.2134 5.8072 19 6 13.9217 3.0434 4.8875 20 7 14.5794 2.8636 3.7630 21 14 14.8551 3.2679 6.4900 22 1 13.8899 3.4506 7.6035 23 1 15.6884 2.0666 6.7498 24 1 15.7290 4.4644 6.3902 25 7 5.9863 3.8068 -0.7174 26 6 6.1615 4.9346 0.2075 27 6 7.2148 3.5588 -1.4838 28 6 3.4311 1.2848 0.0000 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 0.2128 2.3204 0.0006 33 1 1.3340 4.5114 0.0020 34 1 3.7923 4.6380 0.0112 35 1 5.7182 3.5757 1.9142 36 1 5.6892 1.7978 1.9969 37 1 8.0179 2.5006 0.6178 38 1 10.0390 2.6416 1.7774 39 1 10.0368 3.9191 4.2965 40 1 10.0082 2.1589 4.5597 41 1 12.0389 1.9156 3.1583 42 1 12.0681 3.6757 2.8947 43 1 15.5493 2.8479 3.7655 44 1 7.0374 4.7595 0.8323 45 1 6.2995 5.8537 -0.3622 46 1 5.2777 5.0277 0.8387 47 1 7.0804 2.6770 -2.1102 48 1 7.4310 4.4221 -2.1132 49 1 8.0445 3.3933 -0.7966 50 1 4.0207 0.3800 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273225795.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:30 Heat of formation + Delta-G solvation = -49.201908 kcal Electronic energy + Delta-G solvation = -28596.568166 eV Core-core repulsion = 24623.813971 eV Total energy + Delta-G solvation = -3972.754194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.61793 -40.92844 -39.69878 -37.80902 -36.62578 -35.11875 -34.76283 -32.99380 -31.58553 -31.24542 -29.13930 -28.82208 -27.92083 -26.77406 -25.31857 -23.40741 -23.24112 -22.84635 -22.06320 -21.21609 -19.60375 -18.56907 -18.38142 -17.60608 -17.38064 -17.09133 -16.89611 -16.60097 -16.50395 -16.19278 -16.08694 -15.82567 -15.20751 -15.07722 -14.87109 -14.60362 -14.40667 -14.29126 -14.10547 -13.92754 -13.54360 -13.21446 -13.08673 -12.96697 -12.91124 -12.79190 -12.54774 -12.51851 -12.43339 -12.24119 -11.98788 -11.82316 -11.72323 -11.67251 -11.51206 -11.23858 -10.61801 -10.45242 -9.85691 -9.77419 -9.29224 -9.09538 -8.24478 -6.34522 0.33991 0.55306 1.40904 1.41873 1.54782 1.67782 2.11142 2.36554 2.41029 2.75859 3.00087 3.10428 3.27289 3.69643 3.82991 3.89727 4.01423 4.20057 4.24549 4.33661 4.41211 4.41586 4.45677 4.46936 4.50349 4.51514 4.58504 4.62268 4.67217 4.75339 4.81554 4.83999 4.85622 5.04524 5.05817 5.08287 5.28425 5.36786 5.38080 5.49663 5.55843 5.58590 5.63421 5.77537 5.84948 5.94882 5.95295 6.05479 6.16623 6.49673 6.78609 7.04050 7.34765 7.53555 8.87526 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021877 B = 0.001889 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.595564 B =14822.272587 C =15377.795804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.110 3.890 4 C -0.211 4.211 5 C -0.086 4.086 6 C -0.141 4.141 7 C -0.036 4.036 8 C 0.121 3.879 9 H 0.105 0.895 10 C 0.120 3.880 11 N -0.732 5.732 12 C 0.699 3.301 13 O -0.637 6.637 14 N -0.732 5.732 15 C 0.161 3.839 16 C 0.024 3.976 17 C -0.546 4.546 18 H 0.058 0.942 19 C 0.007 3.993 20 N -0.925 5.925 21 Si 0.965 3.035 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.276 1.276 25 N -0.531 5.531 26 C 0.012 3.988 27 C 0.017 3.983 28 C -0.160 4.160 29 H 0.115 0.885 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.406 0.594 38 H 0.406 0.594 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.009 0.991 42 H 0.010 0.990 43 H 0.266 0.734 44 H 0.025 0.975 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.027 0.973 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.957 -0.784 -15.556 32.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.065 3.935 4 C -0.229 4.229 5 C -0.104 4.104 6 C -0.159 4.159 7 C -0.037 4.037 8 C 0.012 3.988 9 H 0.123 0.877 10 C -0.006 4.006 11 N -0.391 5.391 12 C 0.399 3.601 13 O -0.519 6.519 14 N -0.387 5.387 15 C 0.037 3.963 16 C -0.014 4.014 17 C -0.584 4.584 18 H 0.077 0.923 19 C -0.192 4.192 20 N -0.565 5.565 21 Si 0.790 3.210 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.202 1.202 25 N -0.254 5.254 26 C -0.136 4.136 27 C -0.131 4.131 28 C -0.179 4.179 29 H 0.134 0.866 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.154 0.846 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.245 0.755 38 H 0.241 0.759 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.027 0.973 42 H 0.028 0.972 43 H 0.074 0.926 44 H 0.044 0.956 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.101 0.899 48 H 0.100 0.900 49 H 0.045 0.955 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -28.614 -0.714 -15.022 32.325 hybrid contribution 1.610 -0.212 0.674 1.758 sum -27.004 -0.926 -14.348 30.593 Atomic orbital electron populations 1.23311 0.76563 1.05399 1.02208 1.86042 1.23392 1.27094 1.88875 1.19104 0.92370 0.84816 0.97173 1.21500 1.01020 0.92075 1.08320 1.21257 0.94588 0.97804 0.96771 1.21234 0.93842 0.98794 1.02038 1.19291 0.93811 0.92537 0.98097 1.20777 0.91921 0.94962 0.91135 0.87668 1.21859 0.78244 1.02621 0.97860 1.45188 1.07074 1.78551 1.08316 1.16139 0.81985 0.77857 0.84162 1.90872 1.68783 1.59258 1.32945 1.45220 1.04180 1.77213 1.12086 1.21078 0.91910 0.99292 0.84058 1.19133 0.89104 0.96398 0.96723 1.21486 0.92107 1.50149 0.94676 0.92348 1.25860 0.98701 0.94536 1.00055 1.70059 1.08132 1.50433 1.27882 0.85395 0.78375 0.77929 0.79338 1.19039 1.20242 1.20172 1.62163 1.33252 1.04226 1.25775 1.22675 1.00830 0.94191 0.95862 1.22672 0.89138 1.03720 0.97609 1.20345 0.91988 0.98264 1.07351 0.86645 0.91897 0.91568 0.83627 0.83610 0.84622 0.91258 0.92371 0.75542 0.75886 0.93799 0.93923 0.97274 0.97195 0.92551 0.95609 0.90219 0.90960 0.89861 0.90043 0.95461 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.22 10.50 -92.42 -0.97 -7.19 16 3 C 0.11 2.10 6.69 22.51 0.15 2.25 16 4 C -0.21 -3.26 9.04 22.37 0.20 -3.06 16 5 C -0.09 -1.30 10.04 22.26 0.22 -1.08 16 6 C -0.14 -2.46 8.98 22.28 0.20 -2.25 16 7 C -0.04 -0.67 5.01 -19.88 -0.10 -0.77 16 8 C 0.12 2.10 2.26 44.17 0.10 2.20 16 9 H 0.11 1.59 7.45 -2.39 -0.02 1.57 16 10 C 0.12 2.75 4.35 86.38 0.38 3.12 16 11 N -0.73 -18.12 3.98 -478.53 -1.90 -20.02 16 12 C 0.70 24.50 8.57 179.05 1.53 26.03 16 13 O -0.64 -28.05 16.33 -3.99 -0.07 -28.11 16 14 N -0.73 -25.96 5.56 -478.53 -2.66 -28.62 16 15 C 0.16 7.07 5.61 86.38 0.48 7.55 16 16 C 0.02 1.21 5.09 29.85 0.15 1.36 16 17 C -0.55 -30.64 9.11 25.60 0.23 -30.41 16 18 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 19 C 0.01 0.41 5.46 84.66 0.46 0.87 16 20 N -0.93 -54.10 13.29 21.45 0.28 -53.82 16 21 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 25 N -0.53 -8.54 4.29 -927.71 -3.98 -12.52 16 26 C 0.01 0.22 7.45 127.69 0.95 1.17 16 27 C 0.02 0.22 9.15 127.69 1.17 1.39 16 28 C -0.16 -3.15 9.64 22.37 0.22 -2.93 16 29 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.49 7.66 -2.38 -0.02 0.47 16 31 H 0.07 0.46 7.66 -2.39 -0.02 0.45 16 32 H 0.15 1.52 6.30 -2.91 -0.02 1.50 16 33 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 34 H 0.14 2.20 5.21 -2.91 -0.02 2.19 16 35 H 0.07 1.79 5.97 -2.39 -0.01 1.77 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.41 7.84 5.76 -92.71 -0.53 7.31 16 38 H 0.41 12.15 8.49 -92.71 -0.79 11.36 16 39 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 43 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 44 H 0.03 0.56 6.12 -2.39 -0.01 0.54 16 45 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.07 1.28 5.12 -2.38 -0.01 1.27 16 47 H 0.08 0.91 7.86 -2.39 -0.02 0.90 16 48 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.03 0.37 5.64 -2.39 -0.01 0.36 16 50 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -71.91 397.60 -0.15 -72.07 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: -0.36 Total: 25.68 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 7.47 Total: 6.74 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -8.26 Total: -114.98 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -1.04 Total: -35.30 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -71.91 -0.15 -72.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273225795.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.864 kcal (2) G-P(sol) polarization free energy of solvation -71.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds