Wall clock time and date at job start Tue Mar 31 2020 18:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35905 * 117.00003 * 2 1 4 4 C 1.38748 * 120.05337 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.94160 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05536 * 0.02562 * 5 4 3 7 7 C 1.38236 * 120.11306 * 359.95529 * 6 5 4 8 8 C 1.50697 * 119.97343 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.47442 * 159.99915 * 8 7 6 10 10 C 1.53004 * 109.47055 * 279.99727 * 8 7 6 11 11 N 1.46499 * 109.46929 * 296.60505 * 10 8 7 12 12 C 1.34776 * 120.00186 * 174.65170 * 11 10 8 13 13 O 1.21589 * 119.99816 * 0.26606 * 12 11 10 14 14 N 1.34770 * 120.00752 * 180.27488 * 12 11 10 15 15 C 1.46501 * 120.00730 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47229 * 179.97438 * 15 14 12 17 17 C 1.50700 * 109.46635 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00577 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99621 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00170 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99928 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46976 * 90.00132 * 21 19 17 23 23 H 1.48500 * 109.47147 * 209.99965 * 21 19 17 24 24 H 1.48497 * 109.47214 * 330.00140 * 21 19 17 25 25 N 1.46901 * 109.47466 * 39.99408 * 8 7 6 26 26 C 1.46901 * 110.99695 * 62.09142 * 25 8 7 27 27 C 1.46897 * 111.00087 * 186.04435 * 25 8 7 28 28 C 1.38172 * 120.05635 * 0.27741 * 7 6 5 29 29 H 1.09001 * 109.47232 * 60.00294 * 1 2 3 30 30 H 1.09002 * 109.47249 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47494 * 299.99780 * 1 2 3 32 32 H 1.07998 * 120.03171 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.96616 * 179.97438 * 5 4 3 34 34 H 1.08004 * 119.94029 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.47272 * 176.60248 * 10 8 7 36 36 H 1.08995 * 109.47131 * 56.59934 * 10 8 7 37 37 H 0.96998 * 120.00254 * 354.91425 * 11 10 8 38 38 H 0.97006 * 119.99572 * 359.97438 * 14 12 11 39 39 H 1.09003 * 109.46620 * 299.99746 * 15 14 12 40 40 H 1.09001 * 109.47211 * 59.99425 * 15 14 12 41 41 H 1.08998 * 109.46837 * 299.99670 * 16 15 14 42 42 H 1.09001 * 109.47352 * 59.99685 * 16 15 14 43 43 H 0.96995 * 120.00022 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.47046 * 63.95383 * 26 25 8 45 45 H 1.08998 * 109.47117 * 183.95625 * 26 25 8 46 46 H 1.09004 * 109.47005 * 303.95454 * 26 25 8 47 47 H 1.08998 * 109.47159 * 66.47178 * 27 25 8 48 48 H 1.09002 * 109.46853 * 186.46670 * 27 25 8 49 49 H 1.08996 * 109.47375 * 306.46839 * 27 25 8 50 50 H 1.08003 * 120.02591 * 179.74494 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 5.5607 2.5983 -0.0029 9 1 5.9757 1.6537 0.3486 10 6 6.0554 2.8752 -1.4240 11 7 5.6941 1.7534 -2.2942 12 6 5.9333 1.8236 -3.6187 13 8 6.4533 2.8161 -4.0907 14 7 5.5959 0.7939 -4.4200 15 6 5.8553 0.8705 -5.8598 16 6 5.3817 -0.4194 -6.5327 17 6 5.6481 -0.3402 -8.0139 18 1 6.1087 0.5419 -8.4334 19 6 5.3037 -1.3942 -8.8336 20 7 4.7433 -2.4687 -8.3227 21 14 5.6332 -1.2958 -10.6696 22 1 6.9858 -1.8362 -10.9594 23 1 4.6148 -2.0936 -11.3987 24 1 5.5611 0.1204 -11.1103 25 7 5.9933 3.6844 0.8865 26 6 5.5779 3.4274 2.2719 27 6 7.4457 3.8875 0.8015 28 6 3.4310 1.2848 -0.0061 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2127 2.3203 0.0005 33 1 1.3338 4.5114 0.0000 34 1 3.7921 4.6382 -0.0024 35 1 7.1389 2.9938 -1.4150 36 1 5.5931 3.7886 -1.7981 37 1 5.2793 0.9615 -1.9176 38 1 5.1812 0.0019 -4.0434 39 1 5.3170 1.7194 -6.2813 40 1 6.9245 0.9974 -6.0301 41 1 5.9204 -1.2680 -6.1112 42 1 4.3126 -0.5467 -6.3625 43 1 4.5007 -3.2099 -8.8993 44 1 6.0782 2.5321 2.6411 45 1 5.8488 4.2787 2.8963 46 1 4.4983 3.2806 2.3062 47 1 7.7035 4.2560 -0.1914 48 1 7.7551 4.6160 1.5509 49 1 7.9561 2.9415 0.9818 50 1 4.0206 0.3800 -0.0103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273225797.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:34 Heat of formation + Delta-G solvation = -37.512118 kcal Electronic energy + Delta-G solvation = -28944.289020 eV Core-core repulsion = 24972.041733 eV Total energy + Delta-G solvation = -3972.247287 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63694 -39.59110 -38.70468 -36.88485 -35.00819 -34.26809 -32.78157 -31.79550 -30.63636 -29.74844 -28.54139 -27.65018 -27.26030 -25.01792 -23.88466 -22.83764 -22.57684 -21.00640 -20.49974 -20.34315 -18.11632 -17.88598 -16.72664 -16.36544 -16.25725 -15.97451 -15.88671 -15.74076 -15.29080 -15.05353 -14.76945 -14.46547 -14.19610 -13.88711 -13.72257 -13.61152 -13.41481 -13.13219 -12.90976 -12.70091 -12.63351 -12.24688 -12.18283 -12.06168 -11.79328 -11.77836 -11.50548 -11.15871 -11.14115 -11.00787 -10.93058 -10.59873 -10.26420 -9.88854 -9.51284 -9.22086 -9.07056 -8.94123 -8.73919 -8.44290 -8.35484 -8.17436 -6.05626 -4.07983 1.06506 1.28909 2.93042 3.05061 3.32112 3.38027 3.42770 3.50808 3.67867 3.76531 4.33475 4.43574 4.56193 4.69213 4.75756 4.79267 4.85286 4.87491 4.90020 4.93377 5.06949 5.19290 5.21401 5.25182 5.28588 5.31417 5.33199 5.41348 5.56506 5.60972 5.69913 5.78926 5.83379 6.08353 6.25244 6.32481 6.35593 6.45826 6.51660 6.57543 6.66768 6.75980 6.83666 7.07552 7.17886 7.29665 7.61978 7.68575 7.94023 8.30573 8.50175 8.97268 9.07413 9.56461 11.06096 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010959 B = 0.002606 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.385016 B =10741.524424 C =12662.045006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.128 3.872 4 C -0.208 4.208 5 C -0.083 4.083 6 C -0.126 4.126 7 C -0.040 4.040 8 C 0.114 3.886 9 H 0.058 0.942 10 C 0.150 3.850 11 N -0.751 5.751 12 C 0.701 3.299 13 O -0.598 6.598 14 N -0.738 5.738 15 C 0.141 3.859 16 C 0.013 3.987 17 C -0.520 4.520 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 N -0.533 5.533 26 C 0.024 3.976 27 C 0.017 3.983 28 C -0.149 4.149 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.133 0.867 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.392 0.608 38 H 0.393 0.607 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.261 0.739 44 H 0.026 0.974 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.071 0.929 49 H 0.030 0.970 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.346 9.305 26.326 28.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.083 3.917 4 C -0.227 4.227 5 C -0.101 4.101 6 C -0.144 4.144 7 C -0.041 4.041 8 C 0.005 3.995 9 H 0.076 0.924 10 C 0.025 3.975 11 N -0.408 5.408 12 C 0.401 3.599 13 O -0.477 6.477 14 N -0.392 5.392 15 C 0.018 3.982 16 C -0.025 4.025 17 C -0.558 4.558 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 N -0.257 5.257 26 C -0.125 4.125 27 C -0.131 4.131 28 C -0.169 4.169 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.072 0.928 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.151 0.849 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.226 0.774 38 H 0.226 0.774 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.071 0.929 44 H 0.045 0.955 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.090 0.910 49 H 0.048 0.952 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.060 10.305 25.646 28.099 hybrid contribution -0.245 -1.490 -0.355 1.551 sum -5.305 8.815 25.291 27.304 Atomic orbital electron populations 1.23054 0.78313 1.04044 1.01285 1.86078 1.21432 1.26844 1.88685 1.18903 0.92125 0.84241 0.96443 1.21252 0.99989 0.92516 1.08919 1.20970 0.94718 0.96904 0.97505 1.20945 0.93088 0.98702 1.01671 1.19376 0.94115 0.92505 0.98067 1.20755 0.91451 0.93690 0.93607 0.92428 1.21101 0.99848 0.90071 0.86527 1.45010 1.68622 1.20776 1.06442 1.15983 0.79439 0.83934 0.80576 1.90885 1.49982 1.32182 1.74639 1.45516 1.65725 1.18467 1.09484 1.21577 1.00026 1.01073 0.75520 1.19322 0.96955 0.90799 0.95374 1.21063 1.40490 1.02366 0.91914 0.92218 1.24998 0.95008 0.95298 0.99023 1.69958 1.41826 1.06031 1.35570 0.86516 0.77960 0.78194 0.84907 1.20578 1.21211 1.19714 1.61896 1.14383 1.41935 1.07496 1.22429 1.01668 1.00140 0.88214 1.22525 0.86503 1.00588 1.03494 1.20206 0.91550 0.97837 1.07269 0.92499 0.88172 0.92820 0.85667 0.85816 0.84886 0.91309 0.90415 0.77406 0.77448 0.92827 0.92816 0.95993 0.95993 0.92901 0.95539 0.91072 0.90927 0.90356 0.91033 0.95178 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.42 10.50 -19.44 -0.20 -3.62 16 3 C 0.13 1.39 6.69 -39.22 -0.26 1.13 16 4 C -0.21 -2.01 9.04 -39.43 -0.36 -2.36 16 5 C -0.08 -0.77 10.04 -39.60 -0.40 -1.17 16 6 C -0.13 -1.25 8.60 -39.56 -0.34 -1.59 16 7 C -0.04 -0.40 3.41 -104.65 -0.36 -0.76 16 8 C 0.11 1.07 1.78 -68.86 -0.12 0.95 16 9 H 0.06 0.52 8.01 -51.93 -0.42 0.10 16 10 C 0.15 1.80 4.75 -4.04 -0.02 1.78 16 11 N -0.75 -10.29 5.30 -65.23 -0.35 -10.63 16 12 C 0.70 12.91 8.57 -86.92 -0.74 12.16 16 13 O -0.60 -13.32 16.34 5.29 0.09 -13.23 16 14 N -0.74 -13.76 5.56 -65.22 -0.36 -14.13 16 15 C 0.14 3.14 5.61 -4.04 -0.02 3.11 16 16 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 17 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 18 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 21 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 N -0.53 -4.46 4.17 -244.58 -1.02 -5.48 16 26 C 0.02 0.17 9.27 60.07 0.56 0.72 16 27 C 0.02 0.12 8.88 60.06 0.53 0.66 16 28 C -0.15 -1.57 8.77 -39.43 -0.35 -1.91 16 29 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.30 7.66 -51.93 -0.40 -0.09 16 32 H 0.13 0.96 6.30 -52.49 -0.33 0.63 16 33 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.13 1.29 7.71 -52.48 -0.40 0.88 16 35 H 0.07 0.83 6.27 -51.93 -0.33 0.51 16 36 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 37 H 0.39 4.56 7.47 -40.82 -0.31 4.25 16 38 H 0.39 6.41 8.49 -40.82 -0.35 6.06 16 39 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.07 0.43 8.12 -51.93 -0.42 0.00 16 46 H 0.07 0.56 6.55 -51.93 -0.34 0.22 16 47 H 0.08 0.63 6.54 -51.93 -0.34 0.29 16 48 H 0.07 0.44 8.06 -51.93 -0.42 0.02 16 49 H 0.03 0.22 8.12 -51.93 -0.42 -0.20 16 50 H 0.13 1.21 7.97 -52.48 -0.42 0.79 16 LS Contribution 406.92 15.07 6.13 6.13 Total: -1.00 -33.89 406.92 -9.65 -43.54 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -8.21 Total: 5.86 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -1.44 Total: 0.66 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.99 Total: -55.99 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.12 Total: -16.85 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.89 -9.65 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273225797.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.023 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds