Wall clock time and date at job start Tue Mar 31 2020 18:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99725 * 2 1 4 4 C 1.53001 * 109.46975 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47267 * 63.90880 * 4 3 2 6 6 C 1.46898 * 111.00499 * 196.32720 * 5 4 3 7 7 C 1.52998 * 109.46787 * 66.04304 * 6 5 4 8 8 C 1.50706 * 109.46626 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00455 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99873 * 180.02562 * 8 7 6 11 11 C 1.46508 * 119.99976 * 359.97438 * 10 8 7 12 12 C 1.46497 * 120.00185 * 180.02562 * 10 8 7 13 13 C 1.50700 * 109.47051 * 90.00030 * 12 10 8 14 14 H 1.07995 * 120.00155 * 359.97438 * 13 12 10 15 15 C 1.37877 * 119.99816 * 180.02562 * 13 12 10 16 16 N 1.31512 * 119.99878 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99934 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47442 * 59.99560 * 17 15 13 19 19 H 1.48500 * 109.47046 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46715 * 299.99209 * 17 15 13 21 21 C 1.46899 * 110.99747 * 72.37096 * 5 4 3 22 22 C 1.50699 * 109.47264 * 200.09728 * 21 5 4 23 23 C 1.38677 * 120.41432 * 263.82710 * 22 21 5 24 24 C 1.38635 * 118.41849 * 179.78133 * 23 22 21 25 25 C 1.38220 * 119.15809 * 0.51221 * 24 23 22 26 26 N 1.31856 * 120.76894 * 359.72611 * 25 24 23 27 27 C 1.31890 * 121.72002 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47176 * 299.99646 * 1 2 3 29 29 H 1.08998 * 109.47289 * 59.99772 * 1 2 3 30 30 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47486 * 60.00568 * 3 2 1 32 32 H 1.08994 * 109.47459 * 300.00123 * 3 2 1 33 33 H 1.08999 * 109.47312 * 303.90963 * 4 3 2 34 34 H 1.08994 * 109.47579 * 183.91264 * 4 3 2 35 35 H 1.08998 * 109.47559 * 186.04973 * 6 5 4 36 36 H 1.09005 * 109.46599 * 306.04849 * 6 5 4 37 37 H 1.08997 * 109.47695 * 299.99851 * 7 6 5 38 38 H 1.08996 * 109.46940 * 60.00987 * 7 6 5 39 39 H 1.09000 * 109.46508 * 89.99684 * 11 10 8 40 40 H 1.08997 * 109.47009 * 210.00212 * 11 10 8 41 41 H 1.09000 * 109.47068 * 330.00127 * 11 10 8 42 42 H 1.09001 * 109.47070 * 210.00385 * 12 10 8 43 43 H 1.09006 * 109.47087 * 329.99963 * 12 10 8 44 44 H 0.97005 * 120.00198 * 179.97438 * 16 15 13 45 45 H 1.09001 * 109.47366 * 320.09207 * 21 5 4 46 46 H 1.09004 * 109.47247 * 80.09671 * 21 5 4 47 47 H 1.08005 * 120.79278 * 0.02562 * 23 22 21 48 48 H 1.08004 * 120.41494 * 180.21820 * 24 23 22 49 49 H 1.08000 * 119.61592 * 179.74797 * 25 24 23 50 50 H 1.08000 * 119.61330 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9750 0.5390 -1.2448 6 6 5.3576 0.0567 -1.1277 7 6 5.4194 -1.0680 -0.0924 8 6 6.8379 -1.5624 0.0281 9 8 7.7134 -1.0638 -0.6471 10 7 7.1338 -2.5586 0.8864 11 6 6.0764 -3.1605 1.7026 12 6 8.5128 -3.0387 1.0040 13 6 9.2308 -2.2488 2.0678 14 1 8.7119 -1.4670 2.6025 15 6 10.5504 -2.5236 2.3578 16 7 11.1824 -3.4753 1.7063 17 14 11.4401 -1.5449 3.6769 18 1 10.7435 -1.7187 4.9767 19 1 12.8381 -2.0316 3.7960 20 1 11.4461 -0.1068 3.3067 21 6 3.8297 1.4482 -2.3895 22 6 3.8051 0.6483 -3.6664 23 6 4.9639 0.4738 -4.4080 24 6 4.8951 -0.2735 -5.5736 25 6 3.6802 -0.8070 -5.9608 26 7 2.5972 -0.6165 -5.2331 27 6 2.6268 0.0837 -4.1158 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8527 0.5843 0.8520 34 1 3.9786 2.1779 0.0695 35 1 5.6942 -0.3196 -2.0937 36 1 6.0029 0.8767 -0.8124 37 1 5.0829 -0.6917 0.8736 38 1 4.7742 -1.8880 -0.4078 39 1 5.6361 -4.0001 1.1649 40 1 6.4997 -3.5129 2.6432 41 1 5.3069 -2.4160 1.9068 42 1 8.5080 -4.0942 1.2762 43 1 9.0244 -2.9119 0.0499 44 1 12.1110 -3.6683 1.9100 45 1 2.8992 2.0076 -2.2934 46 1 4.6702 2.1419 -2.4114 47 1 5.8987 0.9065 -4.0830 48 1 5.7786 -0.4327 -6.1741 49 1 3.6173 -1.3869 -6.8697 50 1 1.7193 0.2181 -3.5460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277155527.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:18 Heat of formation + Delta-G solvation = -34.764605 kcal Electronic energy + Delta-G solvation = -29353.559126 eV Core-core repulsion = 25381.430980 eV Total energy + Delta-G solvation = -3972.128146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.35953 -39.15924 -38.37527 -37.01781 -34.76273 -33.07976 -32.61866 -31.94811 -31.31477 -29.28914 -27.73800 -26.53154 -26.06438 -25.41420 -23.81162 -23.43563 -22.55028 -21.95602 -20.49477 -18.30875 -17.23382 -16.91072 -16.61828 -16.52869 -16.29557 -16.18256 -15.73125 -15.41794 -15.12110 -14.86565 -14.69983 -14.33025 -14.15860 -13.84673 -13.64701 -13.29269 -13.13499 -12.99922 -12.67114 -12.31143 -12.26051 -12.19464 -12.05792 -11.84480 -11.74078 -11.55527 -11.43480 -11.12118 -10.97057 -10.90685 -10.66135 -10.51988 -10.14738 -9.88194 -9.79047 -9.62495 -9.54812 -9.08873 -8.84543 -8.42310 -8.40048 -7.59622 -6.02957 -4.07830 1.01397 1.20928 3.31738 3.35968 3.37952 3.48903 3.50565 3.65260 3.86801 4.17496 4.35908 4.46164 4.60636 4.70112 4.79918 4.88225 4.89361 4.92561 5.04969 5.12924 5.13966 5.22185 5.25509 5.28519 5.31090 5.34837 5.37069 5.49602 5.50872 5.56625 5.61638 5.69602 5.73147 5.93438 5.98840 6.04525 6.12037 6.13078 6.19602 6.27501 6.60939 6.86225 6.94716 7.07923 7.11060 7.47086 7.57928 7.89388 7.93561 8.25505 8.47062 8.91745 9.13999 9.57115 11.05067 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011457 B = 0.002890 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.246299 B = 9687.618493 C =11048.791203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.067 3.933 4 C 0.048 3.952 5 N -0.525 5.525 6 C 0.072 3.928 7 C -0.133 4.133 8 C 0.505 3.495 9 O -0.548 6.548 10 N -0.603 5.603 11 C 0.084 3.916 12 C 0.245 3.755 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.095 3.905 22 C -0.124 4.124 23 C -0.067 4.067 24 C -0.172 4.172 25 C 0.093 3.907 26 N -0.489 5.489 27 C 0.121 3.879 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.031 0.969 43 H 0.043 0.957 44 H 0.264 0.736 45 H 0.084 0.916 46 H 0.048 0.952 47 H 0.133 0.867 48 H 0.134 0.866 49 H 0.152 0.848 50 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.749 9.664 -8.070 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C -0.010 4.010 4 C -0.079 4.079 5 N -0.250 5.250 6 C -0.055 4.055 7 C -0.173 4.173 8 C 0.291 3.709 9 O -0.426 6.426 10 N -0.335 5.335 11 C -0.060 4.060 12 C 0.126 3.874 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.033 4.033 22 C -0.126 4.126 23 C -0.094 4.094 24 C -0.192 4.192 25 C -0.064 4.064 26 N -0.197 5.197 27 C -0.037 4.037 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.066 0.934 47 H 0.151 0.849 48 H 0.152 0.848 49 H 0.170 0.830 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -22.071 8.870 -8.776 25.354 hybrid contribution 1.704 1.651 1.322 2.717 sum -20.367 10.521 -7.454 24.105 Atomic orbital electron populations 1.22719 0.81828 1.02661 0.99416 1.88037 1.18686 1.26933 1.95178 1.22569 0.93512 0.85337 0.99602 1.22248 0.93546 0.98457 0.93697 1.61916 1.23378 1.37494 1.02166 1.21849 0.86681 0.96742 1.00265 1.21636 0.95607 0.99796 1.00311 1.20327 0.89911 0.80297 0.80380 1.90650 1.49592 1.57050 1.45335 1.48155 1.11026 1.35413 1.38915 1.21633 0.90743 0.97528 0.96090 1.19264 0.75465 0.94434 0.98236 1.21402 0.96509 1.18742 1.19845 0.92590 1.24940 0.97214 0.95324 0.96656 1.69925 1.11373 1.30771 1.41353 0.86561 0.78610 0.80449 0.81805 1.20254 1.21162 1.20225 1.20980 1.01808 0.92646 0.87824 1.20706 0.94560 1.00502 0.96852 1.21603 0.98177 0.95876 0.93724 1.22140 0.99611 0.99419 0.97986 1.22732 0.88243 0.96769 0.98628 1.67701 1.31348 1.14457 1.06233 1.22537 0.97368 0.91968 0.91800 0.94567 0.94425 0.89739 0.93166 0.93515 0.89121 0.92954 0.89934 0.93840 0.89614 0.88785 0.93731 0.90913 0.92357 0.95087 0.93914 0.92672 0.89821 0.93351 0.84898 0.84825 0.83025 0.83126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.37 -3.86 10.63 -35.23 -0.37 -4.23 16 3 C 0.07 0.56 6.08 37.16 0.23 0.78 16 4 C 0.05 0.46 5.22 -3.82 -0.02 0.44 16 5 N -0.53 -5.92 4.31 -236.07 -1.02 -6.93 16 6 C 0.07 1.02 4.07 -3.83 -0.02 1.00 16 7 C -0.13 -2.04 4.22 -27.88 -0.12 -2.16 16 8 C 0.50 10.63 7.67 -10.98 -0.08 10.54 16 9 O -0.55 -13.79 15.56 5.56 0.09 -13.70 16 10 N -0.60 -13.13 2.86 -182.95 -0.52 -13.66 16 11 C 0.08 1.39 10.24 59.85 0.61 2.00 16 12 C 0.25 6.56 5.16 -5.20 -0.03 6.54 16 13 C -0.53 -15.13 9.39 -34.44 -0.32 -15.46 16 14 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 17 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.10 0.92 4.99 -4.98 -0.02 0.89 16 22 C -0.12 -1.34 5.04 -104.48 -0.53 -1.87 16 23 C -0.07 -0.74 8.62 -39.27 -0.34 -1.08 16 24 C -0.17 -1.76 10.11 -39.44 -0.40 -2.16 16 25 C 0.09 0.99 11.18 -17.55 -0.20 0.80 16 26 N -0.49 -6.02 10.36 -13.26 -0.14 -6.16 16 27 C 0.12 1.36 10.88 -17.55 -0.19 1.17 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.34 6.46 -51.93 -0.34 0.00 16 33 H 0.09 0.95 5.93 -51.93 -0.31 0.65 16 34 H 0.05 0.44 8.05 -51.93 -0.42 0.03 16 35 H 0.08 1.28 6.39 -51.93 -0.33 0.95 16 36 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.09 1.18 5.54 -51.93 -0.29 0.90 16 38 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 41 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 42 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 43 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.08 0.65 6.21 -51.93 -0.32 0.33 16 46 H 0.05 0.45 7.91 -51.93 -0.41 0.04 16 47 H 0.13 1.37 8.03 -52.48 -0.42 0.95 16 48 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 49 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 50 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 408.93 15.07 6.16 6.16 Total: -1.00 -35.23 408.93 -8.66 -43.88 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -8.16 Total: -0.61 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -0.41 Total: 4.45 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.94 Total: -52.92 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.29 Total: -17.93 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.23 -8.66 -43.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277155527.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.119 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds