Wall clock time and date at job start Tue Mar 31 2020 18:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99725 * 2 1 4 4 C 1.53001 * 109.46975 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47267 * 63.90880 * 4 3 2 6 6 C 1.46898 * 111.00499 * 196.32720 * 5 4 3 7 7 C 1.52998 * 109.46787 * 66.04304 * 6 5 4 8 8 C 1.50706 * 109.46626 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00455 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99873 * 180.02562 * 8 7 6 11 11 C 1.46508 * 119.99976 * 359.97438 * 10 8 7 12 12 C 1.46497 * 120.00185 * 180.02562 * 10 8 7 13 13 C 1.50700 * 109.47051 * 90.00030 * 12 10 8 14 14 H 1.07995 * 120.00155 * 359.97438 * 13 12 10 15 15 C 1.37877 * 119.99816 * 180.02562 * 13 12 10 16 16 N 1.31512 * 119.99878 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99934 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47442 * 59.99560 * 17 15 13 19 19 H 1.48500 * 109.47046 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46715 * 299.99209 * 17 15 13 21 21 C 1.46899 * 110.99747 * 72.37096 * 5 4 3 22 22 C 1.50699 * 109.47264 * 200.09728 * 21 5 4 23 23 C 1.38677 * 120.41432 * 263.82710 * 22 21 5 24 24 C 1.38635 * 118.41849 * 179.78133 * 23 22 21 25 25 C 1.38220 * 119.15809 * 0.51221 * 24 23 22 26 26 N 1.31856 * 120.76894 * 359.72611 * 25 24 23 27 27 C 1.31890 * 121.72002 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47176 * 299.99646 * 1 2 3 29 29 H 1.08998 * 109.47289 * 59.99772 * 1 2 3 30 30 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47486 * 60.00568 * 3 2 1 32 32 H 1.08994 * 109.47459 * 300.00123 * 3 2 1 33 33 H 1.08999 * 109.47312 * 303.90963 * 4 3 2 34 34 H 1.08994 * 109.47579 * 183.91264 * 4 3 2 35 35 H 1.08998 * 109.47559 * 186.04973 * 6 5 4 36 36 H 1.09005 * 109.46599 * 306.04849 * 6 5 4 37 37 H 1.08997 * 109.47695 * 299.99851 * 7 6 5 38 38 H 1.08996 * 109.46940 * 60.00987 * 7 6 5 39 39 H 1.09000 * 109.46508 * 89.99684 * 11 10 8 40 40 H 1.08997 * 109.47009 * 210.00212 * 11 10 8 41 41 H 1.09000 * 109.47068 * 330.00127 * 11 10 8 42 42 H 1.09001 * 109.47070 * 210.00385 * 12 10 8 43 43 H 1.09006 * 109.47087 * 329.99963 * 12 10 8 44 44 H 0.97005 * 120.00198 * 179.97438 * 16 15 13 45 45 H 1.09001 * 109.47366 * 320.09207 * 21 5 4 46 46 H 1.09004 * 109.47247 * 80.09671 * 21 5 4 47 47 H 1.08005 * 120.79278 * 0.02562 * 23 22 21 48 48 H 1.08004 * 120.41494 * 180.21820 * 24 23 22 49 49 H 1.08000 * 119.61592 * 179.74797 * 25 24 23 50 50 H 1.08000 * 119.61330 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9750 0.5390 -1.2448 6 6 5.3576 0.0567 -1.1277 7 6 5.4194 -1.0680 -0.0924 8 6 6.8379 -1.5624 0.0281 9 8 7.7134 -1.0638 -0.6471 10 7 7.1338 -2.5586 0.8864 11 6 6.0764 -3.1605 1.7026 12 6 8.5128 -3.0387 1.0040 13 6 9.2308 -2.2488 2.0678 14 1 8.7119 -1.4670 2.6025 15 6 10.5504 -2.5236 2.3578 16 7 11.1824 -3.4753 1.7063 17 14 11.4401 -1.5449 3.6769 18 1 10.7435 -1.7187 4.9767 19 1 12.8381 -2.0316 3.7960 20 1 11.4461 -0.1068 3.3067 21 6 3.8297 1.4482 -2.3895 22 6 3.8051 0.6483 -3.6664 23 6 4.9639 0.4738 -4.4080 24 6 4.8951 -0.2735 -5.5736 25 6 3.6802 -0.8070 -5.9608 26 7 2.5972 -0.6165 -5.2331 27 6 2.6268 0.0837 -4.1158 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8527 0.5843 0.8520 34 1 3.9786 2.1779 0.0695 35 1 5.6942 -0.3196 -2.0937 36 1 6.0029 0.8767 -0.8124 37 1 5.0829 -0.6917 0.8736 38 1 4.7742 -1.8880 -0.4078 39 1 5.6361 -4.0001 1.1649 40 1 6.4997 -3.5129 2.6432 41 1 5.3069 -2.4160 1.9068 42 1 8.5080 -4.0942 1.2762 43 1 9.0244 -2.9119 0.0499 44 1 12.1110 -3.6683 1.9100 45 1 2.8992 2.0076 -2.2934 46 1 4.6702 2.1419 -2.4114 47 1 5.8987 0.9065 -4.0830 48 1 5.7786 -0.4327 -6.1741 49 1 3.6173 -1.3869 -6.8697 50 1 1.7193 0.2181 -3.5460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277155527.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:17 Heat of formation + Delta-G solvation = -59.236458 kcal Electronic energy + Delta-G solvation = -29354.620305 eV Core-core repulsion = 25381.430980 eV Total energy + Delta-G solvation = -3973.189325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.21639 -40.67164 -39.26312 -37.83679 -36.58039 -34.76497 -33.91835 -32.91837 -32.30203 -30.34383 -29.44508 -27.41807 -27.13093 -26.68341 -25.12300 -24.48358 -23.62491 -23.08334 -21.41236 -19.91857 -18.70859 -18.17303 -17.90155 -17.39521 -17.31039 -17.06165 -17.03109 -16.75775 -16.28911 -16.14379 -15.94484 -15.40467 -15.16574 -14.89436 -14.67760 -14.44068 -14.07788 -14.05928 -13.94517 -13.69792 -13.62721 -13.45160 -13.26321 -13.17691 -12.92638 -12.78126 -12.65807 -12.50436 -12.36792 -12.27916 -12.19639 -11.79358 -11.70389 -11.63951 -10.72827 -10.65134 -10.59779 -10.41949 -10.37403 -9.89173 -9.42389 -9.28094 -8.22926 -6.38459 0.20262 0.36924 1.36012 1.40351 1.47875 1.83989 2.27580 2.41723 2.77219 3.05319 3.06153 3.13036 3.58509 3.80677 3.85114 3.92007 3.96595 4.07774 4.10317 4.12872 4.24322 4.34805 4.41226 4.47785 4.51551 4.59977 4.60796 4.67193 4.69889 4.71695 4.74622 4.79988 4.90457 4.93904 4.95374 4.98685 5.00063 5.01965 5.06423 5.22126 5.23470 5.35222 5.55281 5.81206 5.83538 5.99964 6.05255 6.07128 6.48304 6.68506 6.78709 7.06822 7.27183 7.47851 8.84097 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011457 B = 0.002890 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.246299 B = 9687.618493 C =11048.791203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.069 3.931 4 C 0.044 3.956 5 N -0.525 5.525 6 C 0.082 3.918 7 C -0.113 4.113 8 C 0.495 3.505 9 O -0.599 6.599 10 N -0.612 5.612 11 C 0.080 3.920 12 C 0.259 3.741 13 C -0.544 4.544 14 H 0.054 0.946 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.969 3.031 18 H -0.259 1.259 19 H -0.278 1.278 20 H -0.276 1.276 21 C 0.098 3.902 22 C -0.128 4.128 23 C -0.082 4.082 24 C -0.177 4.177 25 C 0.084 3.916 26 N -0.512 5.512 27 C 0.113 3.887 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.021 0.979 43 H -0.004 1.004 44 H 0.268 0.732 45 H 0.107 0.893 46 H 0.050 0.950 47 H 0.132 0.868 48 H 0.151 0.849 49 H 0.175 0.825 50 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.737 10.908 -6.844 27.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.008 4.008 4 C -0.083 4.083 5 N -0.250 5.250 6 C -0.046 4.046 7 C -0.153 4.153 8 C 0.284 3.716 9 O -0.481 6.481 10 N -0.343 5.343 11 C -0.062 4.062 12 C 0.138 3.862 13 C -0.583 4.583 14 H 0.072 0.928 15 C -0.193 4.193 16 N -0.569 5.569 17 Si 0.793 3.207 18 H -0.184 1.184 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.030 4.030 22 C -0.130 4.130 23 C -0.109 4.109 24 C -0.196 4.196 25 C -0.072 4.072 26 N -0.220 5.220 27 C -0.045 4.045 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.111 0.889 42 H 0.039 0.961 43 H 0.014 0.986 44 H 0.076 0.924 45 H 0.125 0.875 46 H 0.068 0.932 47 H 0.150 0.850 48 H 0.169 0.831 49 H 0.192 0.808 50 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -24.121 10.106 -7.530 27.214 hybrid contribution 2.289 1.232 0.882 2.745 sum -21.831 11.338 -6.648 25.482 Atomic orbital electron populations 1.22826 0.80540 1.03110 1.00427 1.87985 1.20222 1.28132 1.95426 1.22613 0.92212 0.84964 1.01024 1.22357 0.94797 0.98806 0.92337 1.61894 1.20906 1.38669 1.03493 1.21616 0.88362 0.95876 0.98734 1.21532 0.91242 1.00474 1.02049 1.21349 0.91864 0.79313 0.79048 1.90618 1.51710 1.58584 1.47159 1.48205 1.10233 1.35883 1.39966 1.21906 0.89888 0.99130 0.95283 1.18738 0.78231 0.93881 0.95369 1.21680 0.97287 1.18970 1.20334 0.92756 1.25899 0.98043 0.96309 0.99016 1.70053 1.11832 1.32190 1.42845 0.85442 0.77545 0.78444 0.79230 1.18382 1.20330 1.20185 1.21041 1.03061 0.92257 0.86638 1.20833 0.94334 1.00563 0.97278 1.21789 0.98442 0.96351 0.94317 1.22391 1.00307 0.98959 0.97963 1.23140 0.87993 0.96822 0.99259 1.67716 1.32190 1.15208 1.06928 1.22766 0.97973 0.91913 0.91801 0.93424 0.93500 0.89687 0.91469 0.92279 0.89932 0.91635 0.91811 0.95283 0.87248 0.87426 0.91498 0.91486 0.88870 0.96084 0.98553 0.92366 0.87472 0.93171 0.84981 0.83120 0.80814 0.81904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.58 16 2 O -0.40 -7.25 10.63 -148.98 -1.58 -8.84 16 3 C 0.07 0.93 6.08 71.98 0.44 1.37 16 4 C 0.04 0.74 5.22 86.30 0.45 1.19 16 5 N -0.53 -10.91 4.31 -900.79 -3.88 -14.79 16 6 C 0.08 2.29 4.07 86.30 0.35 2.64 16 7 C -0.11 -3.32 4.22 29.85 0.13 -3.20 16 8 C 0.50 21.10 7.67 87.66 0.67 21.78 16 9 O -0.60 -31.41 15.56 -3.03 -0.05 -31.45 16 10 N -0.61 -26.87 2.86 -851.10 -2.43 -29.30 16 11 C 0.08 2.51 10.24 127.77 1.31 3.82 16 12 C 0.26 14.41 5.16 85.63 0.44 14.86 16 13 C -0.54 -31.90 9.39 25.60 0.24 -31.66 16 14 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 15 C 0.01 0.36 5.46 84.66 0.46 0.83 16 16 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 17 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 C 0.10 1.72 4.99 85.56 0.43 2.14 16 22 C -0.13 -2.66 5.04 -19.78 -0.10 -2.76 16 23 C -0.08 -1.80 8.62 22.47 0.19 -1.61 16 24 C -0.18 -3.56 10.11 22.36 0.23 -3.33 16 25 C 0.08 1.74 11.18 84.68 0.95 2.68 16 26 N -0.51 -12.17 10.36 -195.85 -2.03 -14.20 16 27 C 0.11 2.42 10.88 84.67 0.92 3.34 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.65 6.46 -2.39 -0.02 0.64 16 33 H 0.08 1.51 5.93 -2.39 -0.01 1.50 16 34 H 0.07 0.93 8.05 -2.39 -0.02 0.91 16 35 H 0.06 2.01 6.39 -2.39 -0.02 2.00 16 36 H 0.03 0.88 8.08 -2.38 -0.02 0.86 16 37 H 0.11 2.73 5.54 -2.39 -0.01 2.72 16 38 H 0.11 2.93 8.11 -2.39 -0.02 2.92 16 39 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 41 H 0.09 2.26 6.44 -2.39 -0.02 2.25 16 42 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 43 H 0.00 -0.23 7.42 -2.38 -0.02 -0.25 16 44 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 45 H 0.11 1.38 6.21 -2.39 -0.01 1.36 16 46 H 0.05 0.88 7.91 -2.39 -0.02 0.86 16 47 H 0.13 2.82 8.03 -2.91 -0.02 2.79 16 48 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 49 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 50 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -78.83 408.93 1.61 -77.22 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.92 Total: 17.32 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 8.35 Total: 13.67 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -8.06 Total: -115.07 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -1.63 Total: -40.29 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -78.83 1.61 -77.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277155527.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.988 kcal (2) G-P(sol) polarization free energy of solvation -78.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds