Wall clock time and date at job start Tue Mar 31 2020 18:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 110.99951 * 2 1 4 4 C 1.46898 * 111.00378 * 123.95631 * 2 1 3 5 5 C 1.53006 * 109.46987 * 169.99744 * 4 2 1 6 6 C 1.52999 * 109.46953 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.47310 * 180.02562 * 6 5 4 8 8 C 1.46507 * 120.00163 * 270.00573 * 7 6 5 9 9 C 1.50700 * 109.46991 * 269.99626 * 8 7 6 10 10 H 1.08000 * 120.00034 * 359.97438 * 9 8 7 11 11 C 1.37870 * 120.00070 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00207 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99984 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.46986 * 89.99675 * 13 11 9 15 15 H 1.48498 * 109.47163 * 209.99760 * 13 11 9 16 16 H 1.48498 * 109.46825 * 329.99660 * 13 11 9 17 17 C 1.34779 * 120.00107 * 90.00166 * 7 6 5 18 18 O 1.21279 * 119.99574 * 359.97438 * 17 7 6 19 19 C 1.50696 * 120.00208 * 180.02562 * 17 7 6 20 20 C 1.52997 * 109.47055 * 179.97438 * 19 17 7 21 21 C 1.50706 * 109.47238 * 179.97438 * 20 19 17 22 22 C 1.38834 * 120.35130 * 90.00037 * 21 20 19 23 23 C 1.38381 * 118.47948 * 179.97438 * 22 21 20 24 24 C 1.38914 * 119.11288 * 0.02562 * 23 22 21 25 25 O 1.35681 * 119.68381 * 179.97438 * 24 23 22 26 26 N 1.32248 * 120.63427 * 0.02562 * 24 23 22 27 27 C 1.31964 * 121.64280 * 359.68891 * 26 24 23 28 28 H 1.09000 * 109.46845 * 296.04200 * 1 2 3 29 29 H 1.08996 * 109.47659 * 56.04457 * 1 2 3 30 30 H 1.09001 * 109.47003 * 176.04685 * 1 2 3 31 31 H 1.09000 * 109.47274 * 183.96168 * 3 2 1 32 32 H 1.09003 * 109.47362 * 303.95415 * 3 2 1 33 33 H 1.08997 * 109.47430 * 63.95397 * 3 2 1 34 34 H 1.08998 * 109.47425 * 50.00171 * 4 2 1 35 35 H 1.08994 * 109.47281 * 289.99658 * 4 2 1 36 36 H 1.09001 * 109.47186 * 59.99969 * 5 4 2 37 37 H 1.08994 * 109.47040 * 300.00061 * 5 4 2 38 38 H 1.09001 * 109.46919 * 60.00149 * 6 5 4 39 39 H 1.08997 * 109.47333 * 300.00529 * 6 5 4 40 40 H 1.08998 * 109.47007 * 30.00188 * 8 7 6 41 41 H 1.09001 * 109.47259 * 149.99657 * 8 7 6 42 42 H 0.97002 * 120.00047 * 179.97438 * 12 11 9 43 43 H 1.09001 * 109.47328 * 60.00147 * 19 17 7 44 44 H 1.09004 * 109.47043 * 299.99957 * 19 17 7 45 45 H 1.09001 * 109.46832 * 59.99966 * 20 19 17 46 46 H 1.09000 * 109.47611 * 300.00263 * 20 19 17 47 47 H 1.07999 * 120.75739 * 359.97438 * 22 21 20 48 48 H 1.07999 * 120.43602 * 179.97438 * 23 22 21 49 49 H 0.96703 * 113.99603 * 89.99119 * 25 24 23 50 50 H 1.08005 * 119.57690 * 180.31048 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9553 0.9701 6 6 4.0530 -1.7526 2.1552 7 7 5.4980 -1.9334 1.9953 8 6 6.0153 -3.1045 1.2831 9 6 6.2375 -4.2294 2.2610 10 1 6.0159 -4.0862 3.3083 11 6 6.7236 -5.4414 1.8187 12 7 6.9180 -6.4230 2.6722 13 14 7.1075 -5.6890 0.0073 14 1 8.5186 -5.3083 -0.2561 15 1 6.9045 -7.1156 -0.3512 16 1 6.2048 -4.8396 -0.8105 17 6 6.3515 -1.0223 2.5033 18 8 5.9231 -0.0526 3.0924 19 6 7.8378 -1.2080 2.3383 20 6 8.5741 -0.0419 3.0009 21 6 10.0605 -0.2279 2.8365 22 6 10.7147 0.2951 1.7292 23 6 12.0804 0.1019 1.6175 24 6 12.7465 -0.6050 2.6107 25 8 14.0854 -0.8017 2.5126 26 7 12.0880 -1.0889 3.6505 27 6 10.7869 -0.9161 3.7874 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0827 1.3432 -0.0710 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5091 -1.7407 1.1756 35 1 1.7977 -0.2248 2.0627 36 1 3.9910 0.0193 0.9320 37 1 3.7024 -1.4965 0.0449 38 1 3.5666 -2.7273 2.1936 39 1 3.8551 -1.2111 3.0802 40 1 5.2953 -3.4172 0.5269 41 1 6.9596 -2.8494 0.8021 42 1 7.2597 -7.2758 2.3609 43 1 8.0848 -1.2371 1.2770 44 1 8.1414 -2.1437 2.8078 45 1 8.3271 -0.0124 4.0622 46 1 8.2704 0.8936 2.5311 47 1 10.1702 0.8402 0.9725 48 1 12.6209 0.4947 0.7691 49 1 14.6163 -0.1059 2.9239 50 1 10.2834 -1.3215 4.6527 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278483060.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:44 Heat of formation + Delta-G solvation = -68.964647 kcal Electronic energy + Delta-G solvation = -28794.719414 eV Core-core repulsion = 24821.108243 eV Total energy + Delta-G solvation = -3973.611171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.50709 -40.81265 -38.67566 -38.22171 -36.90822 -35.19519 -34.65403 -33.29709 -32.85004 -30.35442 -29.80697 -28.48607 -27.39977 -25.58088 -24.69106 -24.43025 -23.62829 -22.38162 -21.75386 -19.80447 -19.77665 -19.06395 -18.09954 -17.93582 -17.26470 -16.95886 -16.57014 -16.54418 -16.10801 -16.01793 -15.81632 -15.59085 -15.23451 -14.90033 -14.70606 -14.40907 -14.25938 -14.14843 -14.04264 -13.72605 -13.35207 -13.27359 -13.08818 -12.97857 -12.83039 -12.80264 -12.61136 -12.53552 -12.43556 -12.39657 -12.20050 -12.01283 -11.93185 -11.68480 -11.50113 -10.88110 -10.80019 -10.65885 -10.39127 -9.72595 -9.42444 -9.32447 -8.29581 -6.36572 -0.00289 0.26320 1.39531 1.41239 1.50183 1.76277 2.26059 2.34275 2.57745 2.81961 3.04401 3.06152 3.57310 3.75726 3.92043 3.94223 4.04932 4.07469 4.14057 4.21231 4.24800 4.28213 4.41762 4.46036 4.50311 4.54408 4.63075 4.64951 4.67001 4.74164 4.77393 4.81317 4.82683 4.91786 4.98616 5.00619 5.01888 5.02394 5.15436 5.20540 5.28740 5.35893 5.46186 5.61699 5.72015 6.04913 6.11377 6.19325 6.62561 6.64740 6.71459 6.95060 7.25045 7.36687 8.86603 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008684 B = 0.003213 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3223.458659 B = 8711.173799 C =10966.075022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.562 5.562 3 C 0.023 3.977 4 C 0.063 3.937 5 C -0.112 4.112 6 C 0.120 3.880 7 N -0.596 5.596 8 C 0.218 3.782 9 C -0.538 4.538 10 H 0.031 0.969 11 C 0.020 3.980 12 N -0.943 5.943 13 Si 0.935 3.065 14 H -0.265 1.265 15 H -0.287 1.287 16 H -0.235 1.235 17 C 0.515 3.485 18 O -0.588 6.588 19 C -0.129 4.129 20 C -0.045 4.045 21 C -0.139 4.139 22 C -0.053 4.053 23 C -0.177 4.177 24 C 0.285 3.715 25 O -0.494 6.494 26 N -0.535 5.535 27 C 0.112 3.888 28 H 0.027 0.973 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.024 0.976 34 H 0.081 0.919 35 H 0.033 0.967 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.267 0.733 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.170 0.830 48 H 0.169 0.831 49 H 0.418 0.582 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.329 17.463 -7.454 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.286 5.286 3 C -0.125 4.125 4 C -0.065 4.065 5 C -0.151 4.151 6 C -0.004 4.004 7 N -0.325 5.325 8 C 0.096 3.904 9 C -0.577 4.577 10 H 0.049 0.951 11 C -0.178 4.178 12 N -0.582 5.582 13 Si 0.758 3.242 14 H -0.190 1.190 15 H -0.213 1.213 16 H -0.158 1.158 17 C 0.305 3.695 18 O -0.470 6.470 19 C -0.168 4.168 20 C -0.083 4.083 21 C -0.141 4.141 22 C -0.079 4.079 23 C -0.198 4.198 24 C 0.106 3.894 25 O -0.304 6.304 26 N -0.254 5.254 27 C -0.044 4.044 28 H 0.045 0.955 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.043 0.957 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.123 0.877 44 H 0.103 0.897 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.187 0.813 48 H 0.187 0.813 49 H 0.279 0.721 50 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.674 16.585 -7.268 18.120 hybrid contribution -0.211 0.088 0.390 0.452 sum 0.463 16.673 -6.877 18.042 Atomic orbital electron populations 1.22428 0.86066 1.02843 1.01023 1.61974 1.09040 1.14471 1.43097 1.22435 1.00845 0.88398 1.00845 1.21982 0.94517 0.98668 0.91376 1.21749 0.95156 1.00000 0.98166 1.21307 0.80197 1.00367 0.98524 1.47965 1.06419 1.23079 1.55042 1.19625 0.95840 0.82833 0.92071 1.21519 1.44101 0.97100 0.94932 0.95101 1.25751 0.94497 0.95227 1.02375 1.70051 1.46497 1.04559 1.37103 0.85900 0.80075 0.78229 0.80022 1.19022 1.21296 1.15754 1.20881 0.89820 0.81479 0.77339 1.90581 1.80175 1.31741 1.44536 1.21628 0.90390 1.00840 1.03970 1.20126 0.88007 0.98066 1.02119 1.20937 0.97114 0.99863 0.96222 1.21808 0.93675 0.95945 0.96428 1.22349 0.95732 1.00415 1.01288 1.19526 0.85738 0.93422 0.90690 1.84749 1.12655 1.53430 1.79606 1.67126 1.11367 1.21274 1.25679 1.22600 0.87954 0.94772 0.99050 0.95458 0.90177 0.90964 0.91928 0.90064 0.95711 0.90084 0.94836 0.92454 0.91468 0.90782 0.91743 0.93716 0.93435 0.92397 0.87662 0.89651 0.90825 0.88982 0.81295 0.81336 0.72146 0.82318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.57 127.69 1.22 1.64 16 2 N -0.56 -12.59 5.02 -948.87 -4.76 -17.36 16 3 C 0.02 0.46 9.32 127.69 1.19 1.65 16 4 C 0.06 1.54 4.96 86.31 0.43 1.97 16 5 C -0.11 -3.20 5.46 30.60 0.17 -3.04 16 6 C 0.12 4.11 5.41 86.38 0.47 4.58 16 7 N -0.60 -22.95 2.46 -826.16 -2.03 -24.98 16 8 C 0.22 9.06 4.03 85.63 0.35 9.41 16 9 C -0.54 -28.17 9.84 25.60 0.25 -27.91 16 10 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 11 C 0.02 1.10 5.47 84.65 0.46 1.56 16 12 N -0.94 -56.13 13.96 21.44 0.30 -55.83 16 13 Si 0.93 39.89 27.47 68.60 1.88 41.77 16 14 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 15 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.23 -8.88 6.54 99.48 0.65 -8.23 16 17 C 0.51 19.31 7.67 87.66 0.67 19.98 16 18 O -0.59 -23.76 15.56 -3.03 -0.05 -23.81 16 19 C -0.13 -4.10 4.23 29.85 0.13 -3.98 16 20 C -0.04 -1.18 4.66 29.85 0.14 -1.04 16 21 C -0.14 -3.45 5.15 -19.77 -0.10 -3.55 16 22 C -0.05 -1.06 9.85 22.45 0.22 -0.84 16 23 C -0.18 -3.50 10.04 22.47 0.23 -3.27 16 24 C 0.28 7.22 7.74 84.79 0.66 7.88 16 25 O -0.49 -10.70 13.56 -89.99 -1.22 -11.92 16 26 N -0.54 -16.27 10.39 -308.95 -3.21 -19.48 16 27 C 0.11 3.19 10.85 84.63 0.92 4.11 16 28 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.08 1.16 8.12 -2.39 -0.02 1.14 16 30 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16 31 H 0.06 1.37 6.47 -2.39 -0.02 1.36 16 32 H 0.08 1.34 8.12 -2.39 -0.02 1.32 16 33 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.08 1.90 8.06 -2.39 -0.02 1.88 16 35 H 0.03 0.83 8.12 -2.39 -0.02 0.81 16 36 H 0.06 1.72 6.55 -2.39 -0.02 1.71 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 2.59 8.07 -2.39 -0.02 2.57 16 39 H 0.06 2.31 7.42 -2.39 -0.02 2.29 16 40 H 0.04 1.80 7.13 -2.39 -0.02 1.78 16 41 H 0.05 1.83 5.87 -2.39 -0.01 1.82 16 42 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 43 H 0.11 2.95 7.40 -2.39 -0.02 2.93 16 44 H 0.09 3.17 8.00 -2.38 -0.02 3.15 16 45 H 0.07 2.07 8.05 -2.39 -0.02 2.05 16 46 H 0.09 2.19 8.05 -2.39 -0.02 2.17 16 47 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 48 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 49 H 0.42 4.35 9.06 -74.06 -0.67 3.68 16 50 H 0.16 4.33 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -71.64 411.02 -1.49 -73.13 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.20 Total: 29.31 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 7.39 Total: 9.16 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -9.70 Total: -117.64 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -1.27 Total: -35.73 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.88 Total: 41.77 kcal Total: -71.64 -1.49 -73.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278483060.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.167 kcal (2) G-P(sol) polarization free energy of solvation -71.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds