Wall clock time and date at job start Tue Mar 31 2020 18:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99621 * 2 1 4 4 C 1.53001 * 109.46810 * 184.40815 * 3 2 1 5 5 N 1.46896 * 109.47184 * 69.83362 * 4 3 2 6 6 C 1.46900 * 111.00439 * 284.93489 * 5 4 3 7 7 C 1.53004 * 109.47021 * 172.25821 * 6 5 4 8 8 C 1.50699 * 109.46812 * 185.92676 * 7 6 5 9 9 O 1.21275 * 120.00447 * 355.83209 * 8 7 6 10 10 N 1.34776 * 119.99613 * 175.83835 * 8 7 6 11 11 C 1.46505 * 120.00332 * 5.81494 * 10 8 7 12 12 C 1.46501 * 119.99745 * 185.81253 * 10 8 7 13 13 C 1.50697 * 109.47254 * 90.00369 * 12 10 8 14 14 H 1.07999 * 119.99902 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00059 * 180.02562 * 13 12 10 16 16 N 1.31515 * 120.00101 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99709 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47105 * 60.00000 * 17 15 13 19 19 H 1.48503 * 109.46980 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47130 * 299.99804 * 17 15 13 21 21 C 1.46907 * 110.99933 * 160.97595 * 5 4 3 22 22 C 1.50698 * 109.47086 * 293.96175 * 21 5 4 23 23 C 1.38225 * 119.61746 * 95.02169 * 22 21 5 24 24 C 1.38630 * 119.15631 * 179.97438 * 23 22 21 25 25 C 1.38664 * 118.42520 * 0.02562 * 24 23 22 26 26 C 1.38183 * 119.16476 * 359.97438 * 25 24 23 27 27 N 1.31856 * 119.61406 * 274.99291 * 22 21 5 28 28 H 1.09001 * 109.47177 * 184.82053 * 1 2 3 29 29 H 1.08998 * 109.47808 * 304.82555 * 1 2 3 30 30 H 1.09005 * 109.47006 * 64.82369 * 1 2 3 31 31 H 1.08999 * 109.47081 * 64.41296 * 3 2 1 32 32 H 1.08995 * 109.47288 * 304.40713 * 3 2 1 33 33 H 1.09005 * 109.46727 * 309.83714 * 4 3 2 34 34 H 1.08994 * 109.47314 * 189.83974 * 4 3 2 35 35 H 1.08990 * 109.47109 * 292.25872 * 6 5 4 36 36 H 1.08997 * 109.46537 * 52.26090 * 6 5 4 37 37 H 1.09005 * 109.47027 * 305.92557 * 7 6 5 38 38 H 1.09003 * 109.46885 * 65.92455 * 7 6 5 39 39 H 1.08996 * 109.47146 * 91.85503 * 11 10 8 40 40 H 1.08998 * 109.46764 * 211.86052 * 11 10 8 41 41 H 1.08999 * 109.46835 * 331.85703 * 11 10 8 42 42 H 1.09004 * 109.46868 * 209.99889 * 12 10 8 43 43 H 1.08999 * 109.47304 * 329.99458 * 12 10 8 44 44 H 0.96999 * 119.99995 * 179.97438 * 16 15 13 45 45 H 1.08997 * 109.46869 * 173.95441 * 21 5 4 46 46 H 1.09008 * 109.46666 * 53.95959 * 21 5 4 47 47 H 1.08001 * 120.42145 * 359.95417 * 23 22 21 48 48 H 1.08007 * 120.78221 * 180.02562 * 24 23 22 49 49 H 1.08000 * 120.42152 * 179.97438 * 25 24 23 50 50 H 1.07996 * 119.61852 * 180.27335 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5315 1.1865 -0.1109 5 7 3.8890 0.7132 -1.4548 6 6 3.6075 -0.7212 -1.6001 7 6 3.8083 -1.1351 -3.0593 8 6 3.3807 -2.5690 -3.2381 9 8 3.0287 -3.2211 -2.2780 10 7 3.3896 -3.1269 -4.4649 11 6 3.9341 -2.3834 -5.6038 12 6 2.8549 -4.4769 -4.6596 13 6 1.3857 -4.3932 -4.9843 14 1 0.8988 -3.4308 -5.0397 15 6 0.6628 -5.5454 -5.2097 16 7 1.2555 -6.7175 -5.1418 17 14 -1.1586 -5.4417 -5.6115 18 1 -1.3471 -4.6510 -6.8542 19 1 -1.7009 -6.8102 -5.8077 20 1 -1.8758 -4.7815 -4.4912 21 6 5.2957 1.0073 -1.7596 22 6 5.4907 2.4994 -1.8411 23 6 5.9282 3.1929 -0.7283 24 6 6.1049 4.5652 -0.8141 25 6 5.8332 5.1915 -2.0210 26 6 5.3990 4.4324 -3.0909 27 7 5.2425 3.1281 -2.9732 28 1 -0.3633 -1.0240 0.0864 29 1 -0.3634 0.5868 0.8436 30 1 -0.3633 0.4372 -0.9301 31 1 1.7525 1.8179 0.9269 32 1 1.6275 1.8736 -0.8478 33 1 3.8956 0.4775 0.6328 34 1 3.9860 2.1616 0.0638 35 1 4.2854 -1.2907 -0.9644 36 1 2.5778 -0.9211 -1.3041 37 1 3.2080 -0.4938 -3.7047 38 1 4.8608 -1.0340 -3.3241 39 1 4.9917 -2.6198 -5.7199 40 1 3.3975 -2.6633 -6.5104 41 1 3.8179 -1.3139 -5.4285 42 1 3.3816 -4.9612 -5.4819 43 1 2.9930 -5.0575 -3.7475 44 1 0.7468 -7.5281 -5.3000 45 1 5.5633 0.5531 -2.7136 46 1 5.9307 0.6003 -0.9726 47 1 6.1295 2.6723 0.1963 48 1 6.4461 5.1330 0.0390 49 1 5.9594 6.2592 -2.1237 50 1 5.1895 4.9120 -4.0355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287526968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:15 Heat of formation + Delta-G solvation = -31.675074 kcal Electronic energy + Delta-G solvation = -29397.059496 eV Core-core repulsion = 25425.065323 eV Total energy + Delta-G solvation = -3971.994174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.55512 -39.07561 -38.25425 -36.78233 -34.67368 -32.80992 -32.62361 -32.22899 -31.37905 -29.21465 -27.66911 -26.49998 -26.02806 -25.40959 -23.84709 -23.40980 -22.45746 -21.93097 -20.49887 -18.21040 -17.23005 -16.71366 -16.62161 -16.44404 -16.32753 -16.17278 -15.64082 -15.32350 -15.12115 -14.91707 -14.78558 -14.29041 -14.05955 -13.73061 -13.60390 -13.50952 -13.12451 -12.94794 -12.41909 -12.17130 -12.10399 -12.07115 -11.88593 -11.76157 -11.65126 -11.49461 -11.35471 -11.12993 -10.93016 -10.82593 -10.55330 -10.45031 -10.12548 -10.09156 -9.61219 -9.56058 -9.53409 -9.25779 -8.74210 -8.36855 -8.32329 -7.50560 -5.97585 -4.02123 0.81148 1.01981 3.36227 3.40035 3.40559 3.43266 3.59668 3.81623 3.89372 4.04272 4.26406 4.46207 4.51753 4.56528 4.75591 4.84375 4.90327 5.11965 5.19090 5.20764 5.26501 5.33436 5.36363 5.38387 5.41971 5.44763 5.46556 5.53771 5.58621 5.67016 5.76586 5.78995 5.83966 5.85418 5.88723 5.96578 6.06144 6.28222 6.35576 6.41807 6.57673 7.03719 7.08179 7.17491 7.23175 7.54908 7.66205 7.81930 7.99839 8.31924 8.55940 8.98319 9.23690 9.62819 11.10391 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013724 B = 0.002764 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.678024 B =10128.324324 C =11142.248924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.066 3.934 4 C 0.051 3.949 5 N -0.527 5.527 6 C 0.067 3.933 7 C -0.136 4.136 8 C 0.507 3.493 9 O -0.544 6.544 10 N -0.606 5.606 11 C 0.084 3.916 12 C 0.245 3.755 13 C -0.525 4.525 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.896 5.896 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.094 3.906 22 C 0.145 3.855 23 C -0.173 4.173 24 C -0.076 4.076 25 C -0.180 4.180 26 C 0.101 3.899 27 N -0.463 5.463 28 H 0.088 0.912 29 H 0.035 0.965 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.038 0.962 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.030 0.970 43 H 0.044 0.956 44 H 0.263 0.737 45 H 0.099 0.901 46 H 0.051 0.949 47 H 0.132 0.868 48 H 0.132 0.868 49 H 0.132 0.868 50 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.483 25.056 8.913 28.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C -0.011 4.011 4 C -0.077 4.077 5 N -0.251 5.251 6 C -0.060 4.060 7 C -0.176 4.176 8 C 0.294 3.706 9 O -0.422 6.422 10 N -0.338 5.338 11 C -0.061 4.061 12 C 0.125 3.875 13 C -0.564 4.564 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.535 5.535 17 Si 0.725 3.275 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.034 4.034 22 C 0.006 3.994 23 C -0.194 4.194 24 C -0.102 4.102 25 C -0.200 4.200 26 C -0.056 4.056 27 N -0.172 5.172 28 H 0.106 0.894 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.134 0.866 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.117 0.883 46 H 0.069 0.931 47 H 0.150 0.850 48 H 0.150 0.850 49 H 0.150 0.850 50 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 8.793 24.069 8.324 26.943 hybrid contribution -0.403 0.499 0.890 1.097 sum 8.390 24.568 9.214 27.548 Atomic orbital electron populations 1.22731 0.81122 1.03001 0.99565 1.87960 1.19690 1.27206 1.95044 1.22525 0.93346 0.85469 0.99801 1.22230 0.94685 1.00666 0.90111 1.61988 1.18327 1.18321 1.26498 1.22160 1.04863 0.84148 0.94848 1.21681 1.02283 0.95052 0.98621 1.20291 0.78644 0.88388 0.83298 1.90655 1.48436 1.63958 1.39187 1.48131 1.60005 1.18962 1.06698 1.21631 0.97665 0.95961 0.90802 1.19256 0.93383 0.76952 0.97889 1.21425 0.94367 0.92870 1.47704 0.92525 1.24938 0.98584 0.95187 0.95443 1.69929 1.36424 0.97468 1.49680 0.86568 0.85094 0.76985 0.78815 1.20267 1.21229 1.20197 1.21082 0.90080 0.89457 1.02811 1.21173 0.93141 0.96368 0.88710 1.22026 1.02306 0.95161 0.99866 1.21549 0.96307 0.94497 0.97840 1.22143 1.01995 1.01441 0.94435 1.22827 0.94508 0.89566 0.98673 1.67540 1.13288 1.10259 1.26124 0.89396 0.94589 0.94008 0.93387 0.92472 0.93395 0.89735 0.94409 0.86589 0.88678 0.90273 0.93938 0.91063 0.92124 0.95194 0.93787 0.92737 0.88321 0.93100 0.85026 0.85005 0.84986 0.82780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -5.48 7.90 -35.23 -0.28 -5.76 16 3 C 0.07 0.76 6.21 37.16 0.23 0.99 16 4 C 0.05 0.56 5.37 -3.83 -0.02 0.54 16 5 N -0.53 -6.72 4.45 -236.07 -1.05 -7.77 16 6 C 0.07 1.05 4.06 -3.82 -0.02 1.03 16 7 C -0.14 -2.21 3.93 -27.88 -0.11 -2.32 16 8 C 0.51 11.10 7.65 -10.99 -0.08 11.01 16 9 O -0.54 -14.22 15.50 5.56 0.09 -14.13 16 10 N -0.61 -13.53 2.86 -182.96 -0.52 -14.05 16 11 C 0.08 1.42 10.36 59.85 0.62 2.04 16 12 C 0.24 6.66 5.21 -5.19 -0.03 6.63 16 13 C -0.52 -15.32 9.39 -34.44 -0.32 -15.65 16 14 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 16 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 17 Si 0.90 22.31 29.54 -169.99 -5.02 17.28 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.09 1.04 5.14 -4.97 -0.03 1.01 16 22 C 0.14 1.52 5.71 -82.59 -0.47 1.05 16 23 C -0.17 -1.41 8.00 -39.44 -0.32 -1.73 16 24 C -0.08 -0.52 10.18 -39.28 -0.40 -0.92 16 25 C -0.18 -1.25 10.11 -39.44 -0.40 -1.65 16 26 C 0.10 0.89 11.18 -17.55 -0.20 0.70 16 27 N -0.46 -5.32 10.27 -9.47 -0.10 -5.42 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.54 8.01 -51.93 -0.42 0.13 16 34 H 0.08 0.78 5.41 -51.93 -0.28 0.50 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.12 2.14 5.08 -51.93 -0.26 1.88 16 37 H 0.09 1.52 7.40 -51.93 -0.38 1.13 16 38 H 0.08 1.10 6.57 -51.93 -0.34 0.76 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 41 H 0.06 0.87 6.27 -51.93 -0.33 0.54 16 42 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 43 H 0.04 1.35 7.35 -51.93 -0.38 0.96 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.10 1.14 6.10 -51.93 -0.32 0.83 16 46 H 0.05 0.50 8.02 -51.92 -0.42 0.08 16 47 H 0.13 0.84 7.94 -52.49 -0.42 0.42 16 48 H 0.13 0.57 8.06 -52.48 -0.42 0.14 16 49 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 50 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 405.69 15.07 6.11 6.11 Total: -1.00 -35.83 405.69 -8.71 -44.54 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.16 Total: -0.21 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -0.52 Total: 5.90 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.93 Total: -53.74 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.19 Total: -19.89 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.83 -8.71 -44.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287526968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.862 kcal (2) G-P(sol) polarization free energy of solvation -35.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds