Wall clock time and date at job start Tue Mar 31 2020 18:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99621 * 2 1 4 4 C 1.53001 * 109.46810 * 184.40815 * 3 2 1 5 5 N 1.46896 * 109.47184 * 69.83362 * 4 3 2 6 6 C 1.46900 * 111.00439 * 284.93489 * 5 4 3 7 7 C 1.53004 * 109.47021 * 172.25821 * 6 5 4 8 8 C 1.50699 * 109.46812 * 185.92676 * 7 6 5 9 9 O 1.21275 * 120.00447 * 355.83209 * 8 7 6 10 10 N 1.34776 * 119.99613 * 175.83835 * 8 7 6 11 11 C 1.46505 * 120.00332 * 5.81494 * 10 8 7 12 12 C 1.46501 * 119.99745 * 185.81253 * 10 8 7 13 13 C 1.50697 * 109.47254 * 90.00369 * 12 10 8 14 14 H 1.07999 * 119.99902 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00059 * 180.02562 * 13 12 10 16 16 N 1.31515 * 120.00101 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99709 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47105 * 60.00000 * 17 15 13 19 19 H 1.48503 * 109.46980 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47130 * 299.99804 * 17 15 13 21 21 C 1.46907 * 110.99933 * 160.97595 * 5 4 3 22 22 C 1.50698 * 109.47086 * 293.96175 * 21 5 4 23 23 C 1.38225 * 119.61746 * 95.02169 * 22 21 5 24 24 C 1.38630 * 119.15631 * 179.97438 * 23 22 21 25 25 C 1.38664 * 118.42520 * 0.02562 * 24 23 22 26 26 C 1.38183 * 119.16476 * 359.97438 * 25 24 23 27 27 N 1.31856 * 119.61406 * 274.99291 * 22 21 5 28 28 H 1.09001 * 109.47177 * 184.82053 * 1 2 3 29 29 H 1.08998 * 109.47808 * 304.82555 * 1 2 3 30 30 H 1.09005 * 109.47006 * 64.82369 * 1 2 3 31 31 H 1.08999 * 109.47081 * 64.41296 * 3 2 1 32 32 H 1.08995 * 109.47288 * 304.40713 * 3 2 1 33 33 H 1.09005 * 109.46727 * 309.83714 * 4 3 2 34 34 H 1.08994 * 109.47314 * 189.83974 * 4 3 2 35 35 H 1.08990 * 109.47109 * 292.25872 * 6 5 4 36 36 H 1.08997 * 109.46537 * 52.26090 * 6 5 4 37 37 H 1.09005 * 109.47027 * 305.92557 * 7 6 5 38 38 H 1.09003 * 109.46885 * 65.92455 * 7 6 5 39 39 H 1.08996 * 109.47146 * 91.85503 * 11 10 8 40 40 H 1.08998 * 109.46764 * 211.86052 * 11 10 8 41 41 H 1.08999 * 109.46835 * 331.85703 * 11 10 8 42 42 H 1.09004 * 109.46868 * 209.99889 * 12 10 8 43 43 H 1.08999 * 109.47304 * 329.99458 * 12 10 8 44 44 H 0.96999 * 119.99995 * 179.97438 * 16 15 13 45 45 H 1.08997 * 109.46869 * 173.95441 * 21 5 4 46 46 H 1.09008 * 109.46666 * 53.95959 * 21 5 4 47 47 H 1.08001 * 120.42145 * 359.95417 * 23 22 21 48 48 H 1.08007 * 120.78221 * 180.02562 * 24 23 22 49 49 H 1.08000 * 120.42152 * 179.97438 * 25 24 23 50 50 H 1.07996 * 119.61852 * 180.27335 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5315 1.1865 -0.1109 5 7 3.8890 0.7132 -1.4548 6 6 3.6075 -0.7212 -1.6001 7 6 3.8083 -1.1351 -3.0593 8 6 3.3807 -2.5690 -3.2381 9 8 3.0287 -3.2211 -2.2780 10 7 3.3896 -3.1269 -4.4649 11 6 3.9341 -2.3834 -5.6038 12 6 2.8549 -4.4769 -4.6596 13 6 1.3857 -4.3932 -4.9843 14 1 0.8988 -3.4308 -5.0397 15 6 0.6628 -5.5454 -5.2097 16 7 1.2555 -6.7175 -5.1418 17 14 -1.1586 -5.4417 -5.6115 18 1 -1.3471 -4.6510 -6.8542 19 1 -1.7009 -6.8102 -5.8077 20 1 -1.8758 -4.7815 -4.4912 21 6 5.2957 1.0073 -1.7596 22 6 5.4907 2.4994 -1.8411 23 6 5.9282 3.1929 -0.7283 24 6 6.1049 4.5652 -0.8141 25 6 5.8332 5.1915 -2.0210 26 6 5.3990 4.4324 -3.0909 27 7 5.2425 3.1281 -2.9732 28 1 -0.3633 -1.0240 0.0864 29 1 -0.3634 0.5868 0.8436 30 1 -0.3633 0.4372 -0.9301 31 1 1.7525 1.8179 0.9269 32 1 1.6275 1.8736 -0.8478 33 1 3.8956 0.4775 0.6328 34 1 3.9860 2.1616 0.0638 35 1 4.2854 -1.2907 -0.9644 36 1 2.5778 -0.9211 -1.3041 37 1 3.2080 -0.4938 -3.7047 38 1 4.8608 -1.0340 -3.3241 39 1 4.9917 -2.6198 -5.7199 40 1 3.3975 -2.6633 -6.5104 41 1 3.8179 -1.3139 -5.4285 42 1 3.3816 -4.9612 -5.4819 43 1 2.9930 -5.0575 -3.7475 44 1 0.7468 -7.5281 -5.3000 45 1 5.5633 0.5531 -2.7136 46 1 5.9307 0.6003 -0.9726 47 1 6.1295 2.6723 0.1963 48 1 6.4461 5.1330 0.0390 49 1 5.9594 6.2592 -2.1237 50 1 5.1895 4.9120 -4.0355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287526968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:14 Heat of formation + Delta-G solvation = -56.972685 kcal Electronic energy + Delta-G solvation = -29398.156483 eV Core-core repulsion = 25425.065323 eV Total energy + Delta-G solvation = -3973.091161 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.24434 -40.64876 -39.35280 -37.80695 -36.55655 -34.74123 -33.42722 -33.18343 -32.43375 -30.39948 -29.42019 -27.44325 -27.32906 -26.82191 -25.12355 -24.40893 -23.40894 -23.15754 -21.51598 -19.88683 -18.68545 -18.10020 -17.79608 -17.59045 -17.26632 -17.06889 -16.98968 -16.60236 -16.27616 -16.15277 -16.07462 -15.84363 -15.13319 -14.98698 -14.52182 -14.35227 -14.09180 -13.98182 -13.93191 -13.65627 -13.53766 -13.42731 -13.21147 -12.95698 -12.87996 -12.80901 -12.72067 -12.53338 -12.42273 -12.20037 -12.16075 -12.07061 -11.71495 -11.66006 -10.72122 -10.63839 -10.56868 -10.49581 -10.24513 -9.89824 -9.38988 -9.30669 -8.21634 -6.36969 0.21298 0.46218 1.36221 1.41020 1.48365 1.85920 2.30799 2.42756 2.75166 2.91800 3.07259 3.19034 3.38739 3.85375 3.85804 3.96200 4.08918 4.13493 4.22667 4.25170 4.30029 4.33405 4.38342 4.42117 4.47770 4.52966 4.55275 4.59903 4.66537 4.68222 4.72691 4.83883 4.85339 4.86872 4.94720 4.96350 4.99620 5.07070 5.24414 5.26521 5.34637 5.37231 5.57347 5.85510 5.86377 6.01022 6.07278 6.07501 6.30065 6.70297 6.81114 7.19664 7.28676 7.50858 8.85330 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013724 B = 0.002764 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.678024 B =10128.324324 C =11142.248924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.410 6.410 3 C 0.063 3.937 4 C 0.053 3.947 5 N -0.529 5.529 6 C 0.078 3.922 7 C -0.116 4.116 8 C 0.498 3.502 9 O -0.597 6.597 10 N -0.613 5.613 11 C 0.079 3.921 12 C 0.258 3.742 13 C -0.544 4.544 14 H 0.053 0.947 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.969 3.031 18 H -0.260 1.260 19 H -0.277 1.277 20 H -0.277 1.277 21 C 0.094 3.906 22 C 0.123 3.877 23 C -0.175 4.175 24 C -0.076 4.076 25 C -0.173 4.173 26 C 0.083 3.917 27 N -0.499 5.499 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.107 0.893 35 H 0.025 0.975 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.022 0.978 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.090 0.910 46 H 0.062 0.938 47 H 0.148 0.852 48 H 0.162 0.838 49 H 0.161 0.839 50 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.811 28.487 8.961 31.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.330 6.330 3 C -0.013 4.013 4 C -0.075 4.075 5 N -0.253 5.253 6 C -0.050 4.050 7 C -0.156 4.156 8 C 0.287 3.713 9 O -0.479 6.479 10 N -0.344 5.344 11 C -0.063 4.063 12 C 0.137 3.863 13 C -0.582 4.582 14 H 0.071 0.929 15 C -0.192 4.192 16 N -0.569 5.569 17 Si 0.793 3.207 18 H -0.184 1.184 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.034 4.034 22 C -0.015 4.015 23 C -0.195 4.195 24 C -0.101 4.101 25 C -0.193 4.193 26 C -0.074 4.074 27 N -0.209 5.209 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.125 0.875 35 H 0.043 0.957 36 H 0.106 0.894 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.111 0.889 42 H 0.040 0.960 43 H 0.016 0.984 44 H 0.076 0.924 45 H 0.108 0.892 46 H 0.080 0.920 47 H 0.166 0.834 48 H 0.180 0.820 49 H 0.178 0.822 50 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 9.150 27.547 8.342 30.201 hybrid contribution -0.421 -0.493 0.892 1.103 sum 8.729 27.053 9.234 29.889 Atomic orbital electron populations 1.22781 0.80440 1.02771 1.00654 1.87934 1.20731 1.29097 1.95253 1.22680 0.93437 0.84438 1.00782 1.22310 0.94587 1.01543 0.89036 1.61948 1.19894 1.15750 1.27730 1.21870 1.02943 0.86185 0.93991 1.21570 1.03959 0.90611 0.99411 1.21281 0.77473 0.90244 0.82275 1.90623 1.50718 1.65661 1.40876 1.48179 1.59882 1.17697 1.08686 1.21911 0.98744 0.97101 0.88513 1.18746 0.93140 0.79366 0.95073 1.21676 0.95418 0.92959 1.48180 0.92911 1.25890 1.03711 0.94671 0.94956 1.70053 1.38454 0.98231 1.50126 0.85455 0.78694 0.77578 0.79018 1.18423 1.20197 1.20222 1.21087 0.88972 0.90611 1.02687 1.21073 0.94990 0.95849 0.89572 1.22215 1.01653 0.95950 0.99698 1.21952 0.95273 0.94132 0.98791 1.22482 1.00226 1.02773 0.93781 1.23192 0.94951 0.89062 1.00154 1.67446 1.14609 1.11756 1.27040 0.90659 0.91937 0.94124 0.90869 0.93095 0.93764 0.87466 0.95693 0.89411 0.87697 0.87227 0.91285 0.91631 0.88935 0.95991 0.98428 0.92372 0.89174 0.91950 0.83413 0.82038 0.82152 0.81364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.97 16 2 O -0.41 -12.01 7.90 -148.98 -1.18 -13.19 16 3 C 0.06 1.39 6.21 71.98 0.45 1.84 16 4 C 0.05 1.10 5.37 86.30 0.46 1.57 16 5 N -0.53 -13.07 4.45 -900.79 -4.01 -17.08 16 6 C 0.08 2.49 4.06 86.30 0.35 2.84 16 7 C -0.12 -3.71 3.93 29.85 0.12 -3.60 16 8 C 0.50 22.40 7.65 87.66 0.67 23.07 16 9 O -0.60 -32.94 15.50 -3.02 -0.05 -32.98 16 10 N -0.61 -27.93 2.86 -851.14 -2.43 -30.37 16 11 C 0.08 2.60 10.36 127.77 1.32 3.92 16 12 C 0.26 14.70 5.21 85.63 0.45 15.15 16 13 C -0.54 -32.64 9.39 25.60 0.24 -32.39 16 14 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 15 C 0.01 0.39 5.46 84.65 0.46 0.85 16 16 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 17 Si 0.97 46.11 29.54 68.60 2.03 48.14 16 18 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 C 0.09 1.96 5.14 85.56 0.44 2.40 16 22 C 0.12 2.37 5.71 42.55 0.24 2.61 16 23 C -0.17 -2.37 8.00 22.36 0.18 -2.20 16 24 C -0.08 -0.77 10.18 22.47 0.23 -0.54 16 25 C -0.17 -1.83 10.11 22.36 0.23 -1.60 16 26 C 0.08 1.29 11.18 84.67 0.95 2.24 16 27 N -0.50 -10.73 10.27 -183.88 -1.89 -12.62 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 0.96 8.01 -2.38 -0.02 0.95 16 34 H 0.11 1.74 5.41 -2.39 -0.01 1.72 16 35 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.09 3.37 5.08 -2.39 -0.01 3.36 16 37 H 0.10 3.21 7.40 -2.38 -0.02 3.20 16 38 H 0.11 2.88 6.57 -2.39 -0.02 2.86 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 2.23 8.09 -2.39 -0.02 2.21 16 41 H 0.09 2.43 6.27 -2.39 -0.01 2.42 16 42 H 0.02 1.26 8.07 -2.38 -0.02 1.24 16 43 H 0.00 -0.16 7.35 -2.39 -0.02 -0.18 16 44 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 45 H 0.09 1.98 6.10 -2.39 -0.01 1.96 16 46 H 0.06 1.13 8.02 -2.38 -0.02 1.11 16 47 H 0.15 1.43 7.94 -2.91 -0.02 1.40 16 48 H 0.16 0.64 8.06 -2.91 -0.02 0.61 16 49 H 0.16 0.72 8.06 -2.91 -0.02 0.69 16 50 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -82.05 405.69 1.71 -80.34 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.92 Total: 17.18 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 8.03 Total: 18.14 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -8.04 Total: -117.63 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -1.22 Total: -46.17 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -82.05 1.71 -80.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287526968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.370 kcal (2) G-P(sol) polarization free energy of solvation -82.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds