Wall clock time and date at job start Tue Mar 31 2020 18:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35734 * 117.00395 * 2 1 4 4 C 1.39289 * 120.84611 * 0.24824 * 3 2 1 5 5 C 1.37953 * 119.09487 * 180.29132 * 4 3 2 6 6 N 1.31978 * 120.82168 * 359.70509 * 5 4 3 7 7 C 1.31949 * 121.86600 * 0.02562 * 6 5 4 8 8 C 1.37999 * 120.82162 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.45667 * 179.97438 * 8 7 6 10 10 N 1.46903 * 109.46953 * 259.99944 * 9 8 7 11 11 C 1.46905 * 110.99924 * 66.04445 * 10 9 8 12 12 C 1.50701 * 109.46861 * 199.60437 * 11 10 9 13 13 H 1.08001 * 120.00178 * 355.31012 * 12 11 10 14 14 C 1.37877 * 120.00124 * 175.31849 * 12 11 10 15 15 N 1.31519 * 119.99638 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47201 * 89.99514 * 16 14 12 18 18 H 1.48505 * 109.47035 * 209.99845 * 16 14 12 19 19 H 1.48502 * 109.46943 * 329.99478 * 16 14 12 20 20 C 1.46899 * 111.00175 * 189.99824 * 10 9 8 21 21 C 1.52996 * 109.47062 * 76.03179 * 20 10 9 22 22 N 1.46897 * 109.47316 * 183.41522 * 21 20 10 23 23 C 1.47016 * 111.00028 * 293.63401 * 22 21 20 24 24 C 1.53096 * 109.25697 * 177.60445 * 23 22 21 25 25 O 1.43016 * 109.25827 * 56.85314 * 24 23 22 26 26 C 1.43013 * 113.73896 * 301.32790 * 25 24 23 27 27 C 1.47013 * 111.00164 * 170.00078 * 22 21 20 28 28 H 1.08997 * 109.46986 * 300.00301 * 1 2 3 29 29 H 1.09001 * 109.46600 * 59.99928 * 1 2 3 30 30 H 1.08995 * 109.47706 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.45673 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.58973 * 179.72562 * 5 4 3 33 33 H 1.07997 * 119.59254 * 179.97438 * 7 6 5 34 34 H 1.08994 * 109.47406 * 140.00332 * 9 8 7 35 35 H 1.09000 * 109.47486 * 19.99205 * 9 8 7 36 36 H 1.08999 * 109.47143 * 319.60004 * 11 10 9 37 37 H 1.09001 * 109.47008 * 79.60797 * 11 10 9 38 38 H 0.97001 * 119.99701 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.47296 * 196.03162 * 20 10 9 40 40 H 1.08996 * 109.47287 * 316.03339 * 20 10 9 41 41 H 1.09000 * 109.47258 * 303.41368 * 21 20 10 42 42 H 1.09006 * 109.46986 * 63.41539 * 21 20 10 43 43 H 1.08996 * 109.50654 * 297.54330 * 23 22 21 44 44 H 1.08998 * 109.50460 * 57.67362 * 23 22 21 45 45 H 1.09001 * 109.51278 * 296.91507 * 24 23 22 46 46 H 1.09001 * 109.54202 * 176.80523 * 24 23 22 47 47 H 1.09008 * 109.50243 * 298.73741 * 26 25 24 48 48 H 1.08998 * 109.54672 * 178.63031 * 26 25 24 49 49 H 1.09004 * 109.50991 * 302.32387 * 27 22 21 50 50 H 1.08999 * 109.50706 * 62.41548 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3041 2.3887 0.0052 5 6 1.9677 3.5981 -0.0011 6 7 3.2866 3.6457 -0.0061 7 6 4.0232 2.5509 -0.0058 8 6 3.4346 1.3027 -0.0007 9 6 4.2838 0.0578 -0.0009 10 7 4.3560 -0.4854 -1.3639 11 6 5.0775 0.4301 -2.2580 12 6 4.7321 0.1103 -3.6896 13 1 4.1057 -0.7396 -3.9170 14 6 5.2160 0.9025 -4.7090 15 7 5.9785 1.9376 -4.4320 16 14 4.7873 0.5065 -6.4835 17 1 3.5378 1.2147 -6.8609 18 1 5.8937 0.9479 -7.3704 19 1 4.5898 -0.9580 -6.6301 20 6 4.9720 -1.8189 -1.3673 21 6 3.9620 -2.8486 -0.8571 22 7 4.6029 -4.1683 -0.7829 23 6 4.9487 -4.6621 -2.1238 24 6 5.6661 -6.0086 -1.9965 25 8 4.8301 -6.9228 -1.2819 26 6 4.4744 -6.4737 0.0285 27 6 3.7450 -5.1319 -0.0782 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2246 2.3567 0.0097 32 1 1.4009 4.5173 -0.0017 33 1 5.1000 2.6327 -0.0104 34 1 3.8407 -0.6844 0.6629 35 1 5.2877 0.3026 0.3461 36 1 4.7893 1.4575 -2.0356 37 1 6.1509 0.3132 -2.1084 38 1 6.3186 2.4952 -5.1492 39 1 5.2732 -2.0775 -2.3825 40 1 5.8476 -1.8163 -0.7181 41 1 3.6151 -2.5570 0.1343 42 1 3.1135 -2.8946 -1.5399 43 1 4.0391 -4.7883 -2.7109 44 1 5.6049 -3.9454 -2.6176 45 1 6.6025 -5.8725 -1.4554 46 1 5.8743 -6.4061 -2.9899 47 1 5.3762 -6.3511 0.6285 48 1 3.8204 -7.2071 0.5002 49 1 3.5224 -4.7582 0.9213 50 1 2.8158 -5.2651 -0.6323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287655917.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:39 Heat of formation + Delta-G solvation = -27.427561 kcal Electronic energy + Delta-G solvation = -30191.749273 eV Core-core repulsion = 26219.939285 eV Total energy + Delta-G solvation = -3971.809988 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.38622 -39.49921 -37.91566 -37.09526 -35.37859 -32.69862 -31.81120 -31.15825 -30.88639 -29.34788 -27.53292 -27.22829 -26.12143 -24.34714 -23.98514 -22.65269 -22.08201 -21.62421 -20.28902 -19.75988 -18.02490 -16.86378 -16.52579 -16.27692 -16.13583 -15.68621 -15.42077 -15.04986 -14.90709 -14.86642 -14.67410 -14.56419 -14.14605 -13.99344 -13.77949 -13.69476 -13.07570 -12.89925 -12.70763 -12.25179 -12.13138 -11.87932 -11.86571 -11.73148 -11.40066 -11.37931 -11.27974 -11.09405 -10.82931 -10.69186 -10.60310 -10.51089 -10.10053 -9.86204 -9.60275 -9.23241 -9.12457 -8.78778 -8.40495 -8.33102 -8.25083 -7.24018 -5.99976 -4.00532 1.44210 1.73404 3.31673 3.36941 3.38007 3.40658 3.75358 3.91962 4.15485 4.44500 4.77052 4.86373 4.91253 5.00201 5.05783 5.07350 5.12342 5.14243 5.19816 5.21954 5.30453 5.35730 5.44042 5.50175 5.51246 5.56622 5.62980 5.64687 5.74191 5.78776 5.82764 5.95217 5.99761 6.03912 6.08834 6.17830 6.28101 6.39605 6.51304 6.59134 6.91792 7.03142 7.08753 7.17687 7.29070 7.33231 7.48308 7.82991 8.12876 8.21864 8.38573 8.55389 9.05907 9.62809 11.10440 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007814 B = 0.004455 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3582.460507 B = 6283.459423 C = 8763.140826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.294 6.294 3 C 0.187 3.813 4 C -0.270 4.270 5 C 0.126 3.874 6 N -0.509 5.509 7 C 0.147 3.853 8 C -0.144 4.144 9 C 0.107 3.893 10 N -0.527 5.527 11 C 0.191 3.809 12 C -0.501 4.501 13 H 0.059 0.941 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.893 3.107 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.070 3.930 21 C 0.065 3.935 22 N -0.538 5.538 23 C 0.014 3.986 24 C 0.064 3.936 25 O -0.390 6.390 26 C 0.065 3.935 27 C 0.019 3.981 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.038 0.962 37 H -0.011 1.011 38 H 0.261 0.739 39 H 0.081 0.919 40 H 0.029 0.971 41 H 0.070 0.930 42 H 0.041 0.959 43 H 0.042 0.958 44 H 0.094 0.906 45 H 0.058 0.942 46 H 0.096 0.904 47 H 0.057 0.943 48 H 0.093 0.907 49 H 0.082 0.918 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.744 -8.957 11.852 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.205 6.205 3 C 0.133 3.867 4 C -0.291 4.291 5 C -0.031 4.031 6 N -0.221 5.221 7 C -0.009 4.009 8 C -0.147 4.147 9 C -0.022 4.022 10 N -0.252 5.252 11 C 0.066 3.934 12 C -0.540 4.540 13 H 0.078 0.922 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.721 3.279 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.059 4.059 21 C -0.063 4.063 22 N -0.264 5.264 23 C -0.114 4.114 24 C -0.013 4.013 25 O -0.309 6.309 26 C -0.012 4.012 27 C -0.109 4.109 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.150 0.850 32 H 0.168 0.832 33 H 0.175 0.825 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.007 0.993 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.047 0.953 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.113 0.887 45 H 0.077 0.923 46 H 0.114 0.886 47 H 0.076 0.924 48 H 0.111 0.889 49 H 0.101 0.899 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.262 -8.409 11.766 16.183 hybrid contribution -0.885 -0.370 -1.250 1.575 sum -8.147 -8.779 10.517 15.939 Atomic orbital electron populations 1.23042 0.78950 1.03732 1.01097 1.86141 1.20686 1.26178 1.87460 1.19035 0.91808 0.84278 0.91555 1.22096 1.00959 0.93461 1.12616 1.22409 0.90482 0.96619 0.93636 1.67689 1.06926 1.32190 1.15249 1.22551 1.00154 0.86300 0.91909 1.20218 0.91236 0.97261 1.05970 1.20742 0.95930 0.92663 0.92863 1.62036 1.54846 1.02457 1.05827 1.19808 0.90787 0.91813 0.91000 1.21097 1.30204 1.12372 0.90346 0.92247 1.24953 0.95362 0.95133 0.99034 1.69948 1.34473 1.16712 1.32425 0.86579 0.77921 0.78542 0.84831 1.20809 1.21297 1.19955 1.21880 0.93966 0.88754 1.01282 1.22105 0.96251 0.86964 1.00961 1.62192 1.43720 1.02868 1.17608 1.22838 1.00655 0.97345 0.90536 1.22693 0.93000 0.88617 0.96958 1.87950 1.69653 1.44891 1.28360 1.22634 0.99120 0.94679 0.84787 1.22730 0.95044 0.93341 0.99804 0.93037 0.92567 0.88432 0.85023 0.83212 0.82533 0.90946 0.94833 0.94378 0.99345 0.92979 0.90073 0.95272 0.91163 0.94073 0.93943 0.88734 0.92330 0.88595 0.92435 0.88874 0.89934 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.84 101.05 0.99 1.28 16 2 O -0.29 -4.54 9.87 -18.91 -0.19 -4.73 16 3 C 0.19 3.14 6.70 -38.81 -0.26 2.88 16 4 C -0.27 -3.96 9.11 -39.29 -0.36 -4.32 16 5 C 0.13 1.93 11.17 -17.59 -0.20 1.74 16 6 N -0.51 -9.24 10.36 -13.33 -0.14 -9.38 16 7 C 0.15 2.71 9.41 -17.59 -0.17 2.54 16 8 C -0.14 -2.61 4.68 -104.34 -0.49 -3.09 16 9 C 0.11 1.91 4.64 -4.98 -0.02 1.89 16 10 N -0.53 -10.96 4.34 -237.52 -1.03 -11.99 16 11 C 0.19 4.84 4.59 -4.97 -0.02 4.81 16 12 C -0.50 -13.95 8.52 -34.44 -0.29 -14.24 16 13 H 0.06 1.66 7.76 -52.49 -0.41 1.25 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 16 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.07 1.30 4.66 -3.83 -0.02 1.28 16 21 C 0.06 1.02 5.11 -3.83 -0.02 1.00 16 22 N -0.54 -7.57 4.73 -234.31 -1.11 -8.68 16 23 C 0.01 0.20 5.44 -3.71 -0.02 0.18 16 24 C 0.06 0.77 7.01 37.21 0.26 1.04 16 25 O -0.39 -5.05 10.83 -35.23 -0.38 -5.43 16 26 C 0.06 0.70 7.01 37.21 0.26 0.96 16 27 C 0.02 0.23 5.64 -3.71 -0.02 0.21 16 28 H 0.05 0.44 7.70 -51.93 -0.40 0.04 16 29 H 0.06 0.59 7.72 -51.93 -0.40 0.19 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.13 1.50 6.47 -52.49 -0.34 1.16 16 32 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.16 2.77 8.04 -52.49 -0.42 2.35 16 34 H 0.07 1.19 6.39 -51.93 -0.33 0.86 16 35 H 0.03 0.59 8.00 -51.93 -0.42 0.17 16 36 H 0.04 1.04 5.76 -51.93 -0.30 0.74 16 37 H -0.01 -0.30 8.00 -51.93 -0.42 -0.72 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.08 1.67 5.79 -51.93 -0.30 1.37 16 40 H 0.03 0.54 7.99 -51.93 -0.42 0.12 16 41 H 0.07 1.07 6.61 -51.93 -0.34 0.73 16 42 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.39 6.46 -51.93 -0.34 1.06 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 48 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 50 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 395.53 15.07 5.96 5.96 Total: -1.00 -32.50 395.53 -9.82 -42.32 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.18 Total: 1.34 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -0.47 Total: -0.35 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -1.54 Total: -55.90 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.57 Total: -10.16 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.50 -9.82 -42.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287655917.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.897 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds