Wall clock time and date at job start Tue Mar 31 2020 18:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35734 * 117.00395 * 2 1 4 4 C 1.39289 * 120.84611 * 0.24824 * 3 2 1 5 5 C 1.37953 * 119.09487 * 180.29132 * 4 3 2 6 6 N 1.31978 * 120.82168 * 359.70509 * 5 4 3 7 7 C 1.31949 * 121.86600 * 0.02562 * 6 5 4 8 8 C 1.37999 * 120.82162 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.45667 * 179.97438 * 8 7 6 10 10 N 1.46903 * 109.46953 * 259.99944 * 9 8 7 11 11 C 1.46905 * 110.99924 * 66.04445 * 10 9 8 12 12 C 1.50701 * 109.46861 * 199.60437 * 11 10 9 13 13 H 1.08001 * 120.00178 * 355.31012 * 12 11 10 14 14 C 1.37877 * 120.00124 * 175.31849 * 12 11 10 15 15 N 1.31519 * 119.99638 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47201 * 89.99514 * 16 14 12 18 18 H 1.48505 * 109.47035 * 209.99845 * 16 14 12 19 19 H 1.48502 * 109.46943 * 329.99478 * 16 14 12 20 20 C 1.46899 * 111.00175 * 189.99824 * 10 9 8 21 21 C 1.52996 * 109.47062 * 76.03179 * 20 10 9 22 22 N 1.46897 * 109.47316 * 183.41522 * 21 20 10 23 23 C 1.47016 * 111.00028 * 293.63401 * 22 21 20 24 24 C 1.53096 * 109.25697 * 177.60445 * 23 22 21 25 25 O 1.43016 * 109.25827 * 56.85314 * 24 23 22 26 26 C 1.43013 * 113.73896 * 301.32790 * 25 24 23 27 27 C 1.47013 * 111.00164 * 170.00078 * 22 21 20 28 28 H 1.08997 * 109.46986 * 300.00301 * 1 2 3 29 29 H 1.09001 * 109.46600 * 59.99928 * 1 2 3 30 30 H 1.08995 * 109.47706 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.45673 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.58973 * 179.72562 * 5 4 3 33 33 H 1.07997 * 119.59254 * 179.97438 * 7 6 5 34 34 H 1.08994 * 109.47406 * 140.00332 * 9 8 7 35 35 H 1.09000 * 109.47486 * 19.99205 * 9 8 7 36 36 H 1.08999 * 109.47143 * 319.60004 * 11 10 9 37 37 H 1.09001 * 109.47008 * 79.60797 * 11 10 9 38 38 H 0.97001 * 119.99701 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.47296 * 196.03162 * 20 10 9 40 40 H 1.08996 * 109.47287 * 316.03339 * 20 10 9 41 41 H 1.09000 * 109.47258 * 303.41368 * 21 20 10 42 42 H 1.09006 * 109.46986 * 63.41539 * 21 20 10 43 43 H 1.08996 * 109.50654 * 297.54330 * 23 22 21 44 44 H 1.08998 * 109.50460 * 57.67362 * 23 22 21 45 45 H 1.09001 * 109.51278 * 296.91507 * 24 23 22 46 46 H 1.09001 * 109.54202 * 176.80523 * 24 23 22 47 47 H 1.09008 * 109.50243 * 298.73741 * 26 25 24 48 48 H 1.08998 * 109.54672 * 178.63031 * 26 25 24 49 49 H 1.09004 * 109.50991 * 302.32387 * 27 22 21 50 50 H 1.08999 * 109.50706 * 62.41548 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3041 2.3887 0.0052 5 6 1.9677 3.5981 -0.0011 6 7 3.2866 3.6457 -0.0061 7 6 4.0232 2.5509 -0.0058 8 6 3.4346 1.3027 -0.0007 9 6 4.2838 0.0578 -0.0009 10 7 4.3560 -0.4854 -1.3639 11 6 5.0775 0.4301 -2.2580 12 6 4.7321 0.1103 -3.6896 13 1 4.1057 -0.7396 -3.9170 14 6 5.2160 0.9025 -4.7090 15 7 5.9785 1.9376 -4.4320 16 14 4.7873 0.5065 -6.4835 17 1 3.5378 1.2147 -6.8609 18 1 5.8937 0.9479 -7.3704 19 1 4.5898 -0.9580 -6.6301 20 6 4.9720 -1.8189 -1.3673 21 6 3.9620 -2.8486 -0.8571 22 7 4.6029 -4.1683 -0.7829 23 6 4.9487 -4.6621 -2.1238 24 6 5.6661 -6.0086 -1.9965 25 8 4.8301 -6.9228 -1.2819 26 6 4.4744 -6.4737 0.0285 27 6 3.7450 -5.1319 -0.0782 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2246 2.3567 0.0097 32 1 1.4009 4.5173 -0.0017 33 1 5.1000 2.6327 -0.0104 34 1 3.8407 -0.6844 0.6629 35 1 5.2877 0.3026 0.3461 36 1 4.7893 1.4575 -2.0356 37 1 6.1509 0.3132 -2.1084 38 1 6.3186 2.4952 -5.1492 39 1 5.2732 -2.0775 -2.3825 40 1 5.8476 -1.8163 -0.7181 41 1 3.6151 -2.5570 0.1343 42 1 3.1135 -2.8946 -1.5399 43 1 4.0391 -4.7883 -2.7109 44 1 5.6049 -3.9454 -2.6176 45 1 6.6025 -5.8725 -1.4554 46 1 5.8743 -6.4061 -2.9899 47 1 5.3762 -6.3511 0.6285 48 1 3.8204 -7.2071 0.5002 49 1 3.5224 -4.7582 0.9213 50 1 2.8158 -5.2651 -0.6323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287655917.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:38 Heat of formation + Delta-G solvation = -51.577858 kcal Electronic energy + Delta-G solvation = -30192.796508 eV Core-core repulsion = 26219.939285 eV Total energy + Delta-G solvation = -3972.857223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.62891 -40.54070 -39.10178 -38.58321 -36.59820 -34.76719 -33.18890 -32.14968 -32.10132 -30.81424 -29.09950 -28.36879 -27.36489 -26.00072 -24.99099 -23.98879 -23.64050 -22.93186 -21.46179 -21.22947 -19.18550 -18.60106 -17.95224 -17.59276 -17.15372 -16.81370 -16.78730 -16.47796 -16.18762 -16.05512 -15.94131 -15.83029 -15.49071 -15.19336 -15.09296 -14.97650 -14.53068 -14.29799 -13.96228 -13.90596 -13.65096 -13.19975 -13.09746 -13.04568 -12.87968 -12.64069 -12.49324 -12.41005 -12.35276 -12.28497 -12.08610 -11.82618 -11.68028 -11.38247 -11.24282 -10.65561 -10.58625 -10.43483 -10.01904 -9.63096 -9.41263 -8.97376 -8.17906 -6.26599 0.16596 0.45896 1.37044 1.37697 1.48564 2.30722 2.38212 2.63366 2.87435 2.97736 3.14196 3.53377 3.56861 3.75776 3.89412 3.92999 3.98211 4.05277 4.11234 4.20731 4.26012 4.30974 4.33688 4.40671 4.42059 4.47821 4.50021 4.59358 4.63304 4.69885 4.73694 4.75385 4.83145 4.85683 4.90704 4.93858 4.97497 5.04026 5.06488 5.15086 5.28483 5.30747 5.65527 5.67359 5.90090 6.01436 6.10784 6.18344 6.35003 6.42779 6.64056 6.87737 7.10012 7.41615 8.91980 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007814 B = 0.004455 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3582.460507 B = 6283.459423 C = 8763.140826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.312 6.312 3 C 0.181 3.819 4 C -0.262 4.262 5 C 0.120 3.880 6 N -0.536 5.536 7 C 0.128 3.872 8 C -0.167 4.167 9 C 0.113 3.887 10 N -0.530 5.530 11 C 0.209 3.791 12 C -0.513 4.513 13 H 0.054 0.946 14 C 0.005 3.995 15 N -0.930 5.930 16 Si 0.959 3.041 17 H -0.277 1.277 18 H -0.281 1.281 19 H -0.265 1.265 20 C 0.076 3.924 21 C 0.085 3.915 22 N -0.542 5.542 23 C 0.015 3.985 24 C 0.069 3.931 25 O -0.403 6.403 26 C 0.064 3.936 27 C 0.019 3.981 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.118 0.882 31 H 0.170 0.830 32 H 0.186 0.814 33 H 0.146 0.854 34 H 0.091 0.909 35 H 0.031 0.969 36 H 0.017 0.983 37 H -0.041 1.041 38 H 0.262 0.738 39 H 0.055 0.945 40 H 0.029 0.971 41 H 0.081 0.919 42 H 0.025 0.975 43 H 0.031 0.969 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.111 0.889 47 H 0.063 0.937 48 H 0.120 0.880 49 H 0.100 0.900 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.034 -10.309 12.413 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.223 6.223 3 C 0.126 3.874 4 C -0.283 4.283 5 C -0.036 4.036 6 N -0.248 5.248 7 C -0.027 4.027 8 C -0.170 4.170 9 C -0.016 4.016 10 N -0.254 5.254 11 C 0.083 3.917 12 C -0.552 4.552 13 H 0.072 0.928 14 C -0.193 4.193 15 N -0.571 5.571 16 Si 0.784 3.216 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.190 1.190 20 C -0.052 4.052 21 C -0.044 4.044 22 N -0.268 5.268 23 C -0.114 4.114 24 C -0.008 4.008 25 O -0.322 6.322 26 C -0.013 4.013 27 C -0.109 4.109 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.187 0.813 32 H 0.203 0.797 33 H 0.164 0.836 34 H 0.109 0.891 35 H 0.050 0.950 36 H 0.035 0.965 37 H -0.023 1.023 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.100 0.900 42 H 0.043 0.957 43 H 0.050 0.950 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.129 0.871 47 H 0.081 0.919 48 H 0.138 0.862 49 H 0.118 0.882 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.568 -9.794 12.348 18.438 hybrid contribution -0.256 0.037 -1.348 1.373 sum -9.825 -9.756 11.000 17.683 Atomic orbital electron populations 1.23391 0.76366 1.05630 1.02346 1.86111 1.23370 1.25653 1.87156 1.19189 0.91526 0.85590 0.91070 1.22465 1.02753 0.92264 1.10794 1.23068 0.89732 0.98552 0.92258 1.67677 1.08558 1.32177 1.16418 1.22489 1.00073 0.87034 0.93116 1.20245 0.92446 0.96795 1.07556 1.20735 0.96204 0.93366 0.91246 1.61960 1.53877 1.02526 1.07073 1.19404 0.89229 0.91781 0.91257 1.21369 1.29918 1.12096 0.91795 0.92809 1.25788 0.95169 0.94921 1.03408 1.70078 1.35534 1.17713 1.33756 0.85547 0.77766 0.78758 0.79549 1.20316 1.20653 1.18957 1.21810 0.94902 0.88543 0.99995 1.21808 0.94521 0.87285 1.00738 1.62191 1.44161 1.02658 1.17784 1.22822 1.00073 0.98168 0.90308 1.22697 0.92702 0.87408 0.97956 1.87937 1.69760 1.45161 1.29379 1.22820 0.99795 0.94607 0.84068 1.22848 0.94514 0.93374 1.00166 0.90584 0.92359 0.86408 0.81260 0.79670 0.83622 0.89080 0.95040 0.96459 1.02350 0.92887 0.92610 0.95294 0.90032 0.95679 0.95033 0.90315 0.91841 0.87143 0.91868 0.86225 0.88169 0.94687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.84 113.37 1.12 1.42 16 2 O -0.31 -9.09 9.87 -90.57 -0.89 -9.98 16 3 C 0.18 5.87 6.70 22.77 0.15 6.02 16 4 C -0.26 -7.10 9.11 22.46 0.20 -6.90 16 5 C 0.12 3.52 11.17 84.60 0.95 4.47 16 6 N -0.54 -19.69 10.36 -196.08 -2.03 -21.72 16 7 C 0.13 4.95 9.41 84.62 0.80 5.74 16 8 C -0.17 -6.18 4.68 -19.68 -0.09 -6.27 16 9 C 0.11 4.14 4.64 85.55 0.40 4.53 16 10 N -0.53 -22.78 4.34 -905.37 -3.93 -26.71 16 11 C 0.21 11.15 4.59 85.56 0.39 11.55 16 12 C -0.51 -29.44 8.52 25.60 0.22 -29.22 16 13 H 0.05 3.08 7.76 -2.91 -0.02 3.06 16 14 C 0.01 0.30 5.46 84.65 0.46 0.76 16 15 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 16 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 C 0.08 2.92 4.66 86.30 0.40 3.32 16 21 C 0.08 2.65 5.11 86.30 0.44 3.09 16 22 N -0.54 -14.84 4.73 -895.22 -4.23 -19.07 16 23 C 0.01 0.41 5.44 86.31 0.47 0.88 16 24 C 0.07 1.59 7.01 72.01 0.50 2.10 16 25 O -0.40 -9.69 10.83 -148.98 -1.61 -11.31 16 26 C 0.06 1.21 7.01 72.02 0.50 1.71 16 27 C 0.02 0.41 5.64 86.31 0.49 0.90 16 28 H 0.08 1.02 7.70 -2.39 -0.02 1.00 16 29 H 0.06 1.04 7.72 -2.39 -0.02 1.02 16 30 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.17 3.18 6.47 -2.91 -0.02 3.16 16 32 H 0.19 3.89 8.06 -2.91 -0.02 3.87 16 33 H 0.15 5.65 8.04 -2.91 -0.02 5.62 16 34 H 0.09 2.96 6.39 -2.39 -0.02 2.94 16 35 H 0.03 1.15 8.00 -2.39 -0.02 1.13 16 36 H 0.02 1.00 5.76 -2.39 -0.01 0.98 16 37 H -0.04 -2.38 8.00 -2.39 -0.02 -2.40 16 38 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.06 2.42 5.79 -2.38 -0.01 2.40 16 40 H 0.03 1.10 7.99 -2.39 -0.02 1.08 16 41 H 0.08 2.37 6.61 -2.39 -0.02 2.35 16 42 H 0.02 0.87 8.12 -2.38 -0.02 0.85 16 43 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 2.41 6.46 -2.39 -0.02 2.39 16 45 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 48 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.10 1.81 8.09 -2.38 -0.02 1.79 16 50 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -72.21 395.53 -2.07 -74.28 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.92 Total: 19.64 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 7.40 Total: 4.10 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -9.91 Total: -123.96 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -2.51 Total: -21.29 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -72.21 -2.07 -74.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287655917.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.699 kcal (2) G-P(sol) polarization free energy of solvation -72.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds