Wall clock time and date at job start Tue Mar 31 2020 18:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35912 * 116.99953 * 2 1 4 4 C 1.38749 * 120.47531 * 359.97403 * 3 2 1 5 5 N 1.31804 * 120.68710 * 180.02562 * 4 3 2 6 6 C 1.31880 * 121.78047 * 359.72654 * 5 4 3 7 7 C 1.38220 * 120.88357 * 0.53645 * 6 5 4 8 8 C 1.50700 * 120.38629 * 179.74951 * 7 6 5 9 9 N 1.46908 * 109.47219 * 275.42269 * 8 7 6 10 10 C 1.46904 * 110.99631 * 287.93510 * 9 8 7 11 11 C 1.50698 * 109.47260 * 299.22276 * 10 9 8 12 12 H 1.07998 * 119.99764 * 3.18814 * 11 10 9 13 13 C 1.37880 * 119.99854 * 183.18494 * 11 10 9 14 14 N 1.31519 * 120.00008 * 354.67336 * 13 11 10 15 15 Si 1.86793 * 119.99877 * 174.66568 * 13 11 10 16 16 H 1.48504 * 109.46965 * 65.00609 * 15 13 11 17 17 H 1.48502 * 109.47322 * 185.00390 * 15 13 11 18 18 H 1.48496 * 109.47731 * 305.00456 * 15 13 11 19 19 C 1.46895 * 110.99933 * 163.98157 * 9 8 7 20 20 C 1.52993 * 109.46998 * 189.99740 * 19 9 8 21 21 N 1.46906 * 109.47342 * 179.97438 * 20 19 9 22 22 C 1.47013 * 110.99972 * 293.64096 * 21 20 19 23 23 C 1.53099 * 109.25640 * 177.60231 * 22 21 20 24 24 O 1.43021 * 109.25589 * 56.84555 * 23 22 21 25 25 C 1.43006 * 113.74096 * 301.33056 * 24 23 22 26 26 C 1.47008 * 111.00241 * 169.99775 * 21 20 19 27 27 C 1.38573 * 119.22405 * 359.48033 * 7 6 5 28 28 H 1.09002 * 109.46811 * 60.00706 * 1 2 3 29 29 H 1.08999 * 109.46830 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47344 * 300.00232 * 1 2 3 31 31 H 1.08004 * 119.65825 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.56444 * 180.26295 * 6 5 4 33 33 H 1.08997 * 109.46956 * 155.42744 * 8 7 6 34 34 H 1.08994 * 109.47280 * 35.42183 * 8 7 6 35 35 H 1.09000 * 109.46903 * 59.22554 * 10 9 8 36 36 H 1.09001 * 109.46452 * 179.21862 * 10 9 8 37 37 H 0.96995 * 119.99669 * 179.97438 * 14 13 11 38 38 H 1.09008 * 109.46955 * 69.99840 * 19 9 8 39 39 H 1.09000 * 109.47522 * 310.00075 * 19 9 8 40 40 H 1.08999 * 109.47195 * 60.00430 * 20 19 9 41 41 H 1.09006 * 109.47654 * 300.00365 * 20 19 9 42 42 H 1.08998 * 109.50558 * 297.53822 * 22 21 20 43 43 H 1.08997 * 109.50969 * 57.67017 * 22 21 20 44 44 H 1.08997 * 109.51154 * 296.91638 * 23 22 21 45 45 H 1.08998 * 109.54178 * 176.80415 * 23 22 21 46 46 H 1.08998 * 109.50778 * 298.73154 * 25 24 23 47 47 H 1.09008 * 109.54282 * 178.62726 * 25 24 23 48 48 H 1.08998 * 109.51001 * 302.33507 * 26 21 20 49 49 H 1.09005 * 109.50400 * 62.42103 * 26 21 20 50 50 H 1.07997 * 120.81383 * 180.22860 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3809 -0.0005 5 7 1.8940 3.5574 -0.0011 6 6 3.2078 3.6722 0.0043 7 6 4.0179 2.5523 -0.0004 8 6 5.5179 2.6965 0.0001 9 7 5.9928 2.8794 -1.3781 10 6 5.8896 1.6281 -2.1408 11 6 6.7425 0.5706 -1.4888 12 1 7.2642 0.7891 -0.5688 13 6 6.8569 -0.6759 -2.0669 14 7 6.1408 -0.9768 -3.1283 15 14 8.0289 -1.9373 -1.3428 16 1 7.5686 -2.3172 0.0171 17 1 8.0571 -3.1422 -2.2103 18 1 9.3925 -1.3555 -1.2592 19 6 7.3679 3.3956 -1.3969 20 6 7.7387 3.8070 -2.8231 21 7 9.1137 4.3238 -2.8419 22 6 9.2148 5.5800 -2.0849 23 6 10.6716 6.0507 -2.0799 24 8 11.1260 6.1930 -3.4286 25 6 11.0420 4.9883 -4.1945 26 6 9.5890 4.5068 -4.2209 27 6 3.4345 1.2953 0.0000 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2213 2.3268 -0.0014 32 1 3.6569 4.6544 0.0080 33 1 5.9690 1.7992 0.4236 34 1 5.7995 3.5623 0.5992 35 1 4.8510 1.2977 -2.1580 36 1 6.2346 1.7952 -3.1612 37 1 6.2215 -1.8535 -3.5352 38 1 8.0520 2.6196 -1.0531 39 1 7.4402 4.2613 -0.7386 40 1 7.0547 4.5830 -3.1668 41 1 7.6665 2.9413 -3.4815 42 1 8.5887 6.3390 -2.5540 43 1 8.8821 5.4153 -1.0601 44 1 11.2897 5.3164 -1.5633 45 1 10.7429 7.0107 -1.5686 46 1 11.6708 4.2231 -3.7394 47 1 11.3807 5.1793 -5.2129 48 1 9.5293 3.5587 -4.7553 49 1 8.9684 5.2481 -4.7244 50 1 4.0429 0.4031 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290313052.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:30 Heat of formation + Delta-G solvation = -28.554221 kcal Electronic energy + Delta-G solvation = -29667.510183 eV Core-core repulsion = 25695.651339 eV Total energy + Delta-G solvation = -3971.858843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.31684 -39.46358 -38.08010 -37.06408 -35.37139 -32.70308 -32.18447 -31.14877 -30.51101 -29.11773 -27.48250 -27.11387 -26.03011 -24.33750 -23.88814 -23.08262 -22.73603 -21.09867 -20.25199 -19.56494 -17.56353 -16.68010 -16.52737 -16.39295 -16.27869 -16.05682 -15.68033 -15.21037 -15.01077 -14.97871 -14.62884 -14.36526 -14.08517 -13.80483 -13.64662 -13.26452 -12.93968 -12.68122 -12.60267 -12.47413 -12.19455 -11.97491 -11.76594 -11.56105 -11.34458 -11.34199 -11.28694 -11.00613 -10.88276 -10.80850 -10.53431 -10.32153 -10.11195 -10.05507 -9.66462 -9.60078 -9.09325 -8.97702 -8.45073 -8.15668 -8.09204 -7.27729 -6.06597 -4.14860 1.48644 1.72251 3.26262 3.32166 3.34772 3.39400 3.79968 3.96438 4.17467 4.37874 4.76326 4.92173 4.94466 5.04897 5.10713 5.13907 5.16895 5.18284 5.20991 5.24373 5.31491 5.35217 5.47192 5.55671 5.56725 5.61240 5.65654 5.70553 5.74806 5.84040 5.89326 5.92116 6.04735 6.12917 6.17180 6.39703 6.41969 6.49729 6.75732 6.82241 6.87883 7.08886 7.12689 7.24022 7.27532 7.49061 7.50363 7.85807 7.95517 8.15945 8.22641 8.29034 8.93402 9.51540 10.98450 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010278 B = 0.003472 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.655026 B = 8063.685452 C =10130.684491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.071 3.929 4 C 0.002 3.998 5 N -0.460 5.460 6 C 0.072 3.928 7 C -0.066 4.066 8 C 0.098 3.902 9 N -0.538 5.538 10 C 0.184 3.816 11 C -0.549 4.549 12 H 0.057 0.943 13 C 0.070 3.930 14 N -0.886 5.886 15 Si 0.884 3.116 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.069 3.931 20 C 0.065 3.935 21 N -0.535 5.535 22 C 0.016 3.984 23 C 0.064 3.936 24 O -0.391 6.391 25 C 0.065 3.935 26 C 0.020 3.980 27 C -0.084 4.084 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.032 0.968 36 H 0.032 0.968 37 H 0.263 0.737 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.033 0.967 41 H 0.087 0.913 42 H 0.039 0.961 43 H 0.088 0.912 44 H 0.058 0.942 45 H 0.094 0.906 46 H 0.059 0.941 47 H 0.094 0.906 48 H 0.087 0.913 49 H 0.039 0.961 50 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 9.089 3.871 9.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.024 3.976 4 C -0.156 4.156 5 N -0.169 5.169 6 C -0.086 4.086 7 C -0.068 4.068 8 C -0.031 4.031 9 N -0.262 5.262 10 C 0.059 3.941 11 C -0.588 4.588 12 H 0.075 0.925 13 C -0.133 4.133 14 N -0.524 5.524 15 Si 0.711 3.289 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.059 4.059 20 C -0.062 4.062 21 N -0.261 5.261 22 C -0.112 4.112 23 C -0.013 4.013 24 O -0.309 6.309 25 C -0.012 4.012 26 C -0.109 4.109 27 C -0.111 4.111 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.166 0.834 32 H 0.170 0.830 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.105 0.895 42 H 0.057 0.943 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.112 0.888 46 H 0.077 0.923 47 H 0.113 0.887 48 H 0.106 0.894 49 H 0.057 0.943 50 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.647 9.658 3.642 10.452 hybrid contribution 0.675 -1.911 0.279 2.046 sum -0.971 7.747 3.921 8.737 Atomic orbital electron populations 1.23031 0.78839 1.03848 1.01125 1.86127 1.20923 1.26414 1.88774 1.20084 0.93279 0.85379 0.98837 1.22682 0.99902 0.87514 1.05453 1.67464 1.12343 1.26348 1.10781 1.22432 0.88299 0.98633 0.99238 1.20680 0.97508 0.92298 0.96330 1.20847 0.89129 1.01196 0.91886 1.62493 1.20174 1.32451 1.11085 1.19823 0.97368 0.83558 0.93357 1.21585 1.29954 0.97714 1.09507 0.92525 1.24898 0.95400 0.98111 0.94919 1.69940 1.39299 1.21800 1.21405 0.86787 0.81945 0.81034 0.79092 1.20370 1.21287 1.20108 1.21805 0.90645 0.98358 0.95111 1.22076 0.85625 0.99466 0.99016 1.62122 1.24336 1.26955 1.12641 1.22808 0.97162 0.91089 1.00155 1.22669 0.93719 1.01329 0.83610 1.87936 1.85487 1.33843 1.23658 1.22662 0.95464 0.86998 0.96123 1.22734 0.96290 1.01473 0.90364 1.21085 0.91275 0.99454 0.99238 0.92679 0.88333 0.92857 0.83368 0.83040 0.91901 0.91560 0.94961 0.94981 0.92766 0.92715 0.93197 0.94878 0.89515 0.94260 0.89407 0.92347 0.88841 0.92265 0.88749 0.89438 0.94270 0.83280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.82 101.05 0.99 1.28 16 2 O -0.31 -5.01 10.51 -19.46 -0.20 -5.22 16 3 C 0.07 1.23 6.71 -39.07 -0.26 0.97 16 4 C 0.00 0.04 10.22 -17.37 -0.18 -0.14 16 5 N -0.46 -7.79 10.35 -13.12 -0.14 -7.92 16 6 C 0.07 1.20 10.88 -17.54 -0.19 1.01 16 7 C -0.07 -1.17 4.91 -104.50 -0.51 -1.68 16 8 C 0.10 1.74 4.97 -4.97 -0.02 1.72 16 9 N -0.54 -10.53 4.66 -237.52 -1.11 -11.63 16 10 C 0.18 4.41 4.72 -4.97 -0.02 4.38 16 11 C -0.55 -13.99 7.33 -34.44 -0.25 -14.24 16 12 H 0.06 1.43 5.95 -52.49 -0.31 1.12 16 13 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 14 N -0.89 -25.12 13.30 55.43 0.74 -24.39 16 15 Si 0.88 20.82 29.54 -169.99 -5.02 15.80 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.07 1.23 4.71 -3.83 -0.02 1.22 16 20 C 0.07 1.12 4.89 -3.82 -0.02 1.11 16 21 N -0.53 -8.11 4.73 -234.31 -1.11 -9.22 16 22 C 0.02 0.21 5.44 -3.71 -0.02 0.19 16 23 C 0.06 0.74 7.01 37.21 0.26 1.00 16 24 O -0.39 -5.18 10.83 -35.23 -0.38 -5.56 16 25 C 0.06 0.78 7.01 37.21 0.26 1.04 16 26 C 0.02 0.27 5.64 -3.72 -0.02 0.25 16 27 C -0.08 -1.58 8.64 -39.14 -0.34 -1.92 16 28 H 0.05 0.54 7.68 -51.93 -0.40 0.14 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.48 7.68 -51.93 -0.40 0.08 16 31 H 0.15 1.87 6.32 -52.48 -0.33 1.53 16 32 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 33 H 0.06 1.23 6.08 -51.93 -0.32 0.91 16 34 H 0.07 1.00 7.79 -51.93 -0.40 0.59 16 35 H 0.03 0.85 6.62 -51.93 -0.34 0.51 16 36 H 0.03 0.84 6.33 -51.93 -0.33 0.51 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.05 1.11 6.57 -51.92 -0.34 0.77 16 39 H 0.05 0.78 6.23 -51.93 -0.32 0.45 16 40 H 0.03 0.57 8.12 -51.93 -0.42 0.14 16 41 H 0.09 1.72 6.38 -51.93 -0.33 1.39 16 42 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.09 1.07 6.38 -51.93 -0.33 0.74 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 48 H 0.09 1.19 8.09 -51.93 -0.42 0.77 16 49 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.15 3.10 8.06 -52.49 -0.42 2.68 16 LS Contribution 391.22 15.07 5.90 5.90 Total: -1.00 -30.07 391.22 -9.71 -39.78 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.94 Total: 4.51 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -0.44 Total: -2.05 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -1.61 Total: -53.16 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.59 Total: -10.78 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.07 -9.71 -39.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290313052.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.224 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds