Wall clock time and date at job start Tue Mar 31 2020 18:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35912 * 116.99953 * 2 1 4 4 C 1.38749 * 120.47531 * 359.97403 * 3 2 1 5 5 N 1.31804 * 120.68710 * 180.02562 * 4 3 2 6 6 C 1.31880 * 121.78047 * 359.72654 * 5 4 3 7 7 C 1.38220 * 120.88357 * 0.53645 * 6 5 4 8 8 C 1.50700 * 120.38629 * 179.74951 * 7 6 5 9 9 N 1.46908 * 109.47219 * 275.42269 * 8 7 6 10 10 C 1.46904 * 110.99631 * 287.93510 * 9 8 7 11 11 C 1.50698 * 109.47260 * 299.22276 * 10 9 8 12 12 H 1.07998 * 119.99764 * 3.18814 * 11 10 9 13 13 C 1.37880 * 119.99854 * 183.18494 * 11 10 9 14 14 N 1.31519 * 120.00008 * 354.67336 * 13 11 10 15 15 Si 1.86793 * 119.99877 * 174.66568 * 13 11 10 16 16 H 1.48504 * 109.46965 * 65.00609 * 15 13 11 17 17 H 1.48502 * 109.47322 * 185.00390 * 15 13 11 18 18 H 1.48496 * 109.47731 * 305.00456 * 15 13 11 19 19 C 1.46895 * 110.99933 * 163.98157 * 9 8 7 20 20 C 1.52993 * 109.46998 * 189.99740 * 19 9 8 21 21 N 1.46906 * 109.47342 * 179.97438 * 20 19 9 22 22 C 1.47013 * 110.99972 * 293.64096 * 21 20 19 23 23 C 1.53099 * 109.25640 * 177.60231 * 22 21 20 24 24 O 1.43021 * 109.25589 * 56.84555 * 23 22 21 25 25 C 1.43006 * 113.74096 * 301.33056 * 24 23 22 26 26 C 1.47008 * 111.00241 * 169.99775 * 21 20 19 27 27 C 1.38573 * 119.22405 * 359.48033 * 7 6 5 28 28 H 1.09002 * 109.46811 * 60.00706 * 1 2 3 29 29 H 1.08999 * 109.46830 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47344 * 300.00232 * 1 2 3 31 31 H 1.08004 * 119.65825 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.56444 * 180.26295 * 6 5 4 33 33 H 1.08997 * 109.46956 * 155.42744 * 8 7 6 34 34 H 1.08994 * 109.47280 * 35.42183 * 8 7 6 35 35 H 1.09000 * 109.46903 * 59.22554 * 10 9 8 36 36 H 1.09001 * 109.46452 * 179.21862 * 10 9 8 37 37 H 0.96995 * 119.99669 * 179.97438 * 14 13 11 38 38 H 1.09008 * 109.46955 * 69.99840 * 19 9 8 39 39 H 1.09000 * 109.47522 * 310.00075 * 19 9 8 40 40 H 1.08999 * 109.47195 * 60.00430 * 20 19 9 41 41 H 1.09006 * 109.47654 * 300.00365 * 20 19 9 42 42 H 1.08998 * 109.50558 * 297.53822 * 22 21 20 43 43 H 1.08997 * 109.50969 * 57.67017 * 22 21 20 44 44 H 1.08997 * 109.51154 * 296.91638 * 23 22 21 45 45 H 1.08998 * 109.54178 * 176.80415 * 23 22 21 46 46 H 1.08998 * 109.50778 * 298.73154 * 25 24 23 47 47 H 1.09008 * 109.54282 * 178.62726 * 25 24 23 48 48 H 1.08998 * 109.51001 * 302.33507 * 26 21 20 49 49 H 1.09005 * 109.50400 * 62.42103 * 26 21 20 50 50 H 1.07997 * 120.81383 * 180.22860 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3809 -0.0005 5 7 1.8940 3.5574 -0.0011 6 6 3.2078 3.6722 0.0043 7 6 4.0179 2.5523 -0.0004 8 6 5.5179 2.6965 0.0001 9 7 5.9928 2.8794 -1.3781 10 6 5.8896 1.6281 -2.1408 11 6 6.7425 0.5706 -1.4888 12 1 7.2642 0.7891 -0.5688 13 6 6.8569 -0.6759 -2.0669 14 7 6.1408 -0.9768 -3.1283 15 14 8.0289 -1.9373 -1.3428 16 1 7.5686 -2.3172 0.0171 17 1 8.0571 -3.1422 -2.2103 18 1 9.3925 -1.3555 -1.2592 19 6 7.3679 3.3956 -1.3969 20 6 7.7387 3.8070 -2.8231 21 7 9.1137 4.3238 -2.8419 22 6 9.2148 5.5800 -2.0849 23 6 10.6716 6.0507 -2.0799 24 8 11.1260 6.1930 -3.4286 25 6 11.0420 4.9883 -4.1945 26 6 9.5890 4.5068 -4.2209 27 6 3.4345 1.2953 0.0000 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2213 2.3268 -0.0014 32 1 3.6569 4.6544 0.0080 33 1 5.9690 1.7992 0.4236 34 1 5.7995 3.5623 0.5992 35 1 4.8510 1.2977 -2.1580 36 1 6.2346 1.7952 -3.1612 37 1 6.2215 -1.8535 -3.5352 38 1 8.0520 2.6196 -1.0531 39 1 7.4402 4.2613 -0.7386 40 1 7.0547 4.5830 -3.1668 41 1 7.6665 2.9413 -3.4815 42 1 8.5887 6.3390 -2.5540 43 1 8.8821 5.4153 -1.0601 44 1 11.2897 5.3164 -1.5633 45 1 10.7429 7.0107 -1.5686 46 1 11.6708 4.2231 -3.7394 47 1 11.3807 5.1793 -5.2129 48 1 9.5293 3.5587 -4.7553 49 1 8.9684 5.2481 -4.7244 50 1 4.0429 0.4031 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290313052.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:29 Heat of formation + Delta-G solvation = -50.872830 kcal Electronic energy + Delta-G solvation = -29668.477990 eV Core-core repulsion = 25695.651339 eV Total energy + Delta-G solvation = -3972.826651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.60685 -40.54587 -39.37835 -38.48665 -36.60080 -34.62869 -33.64638 -32.15617 -31.79192 -30.49998 -29.03261 -28.37774 -27.22458 -26.02240 -24.94406 -24.42663 -24.24635 -22.37456 -21.41663 -21.14572 -18.89762 -18.31755 -17.94796 -17.65001 -17.56249 -17.09842 -16.83364 -16.75655 -16.40614 -16.01521 -15.97963 -15.74804 -15.44661 -15.05903 -14.97914 -14.53370 -14.36021 -14.26225 -13.99227 -13.91599 -13.47566 -13.23684 -13.07615 -12.88960 -12.76746 -12.68291 -12.46354 -12.37928 -12.31475 -12.29676 -12.10913 -11.98032 -11.83944 -11.51284 -11.32560 -10.64553 -10.55143 -10.43266 -10.37578 -9.36002 -9.34915 -9.00524 -8.12230 -6.28183 0.16672 0.35347 1.36265 1.37640 1.44554 2.29089 2.38318 2.64932 2.86273 2.99461 3.14262 3.56534 3.61628 3.72711 3.91721 3.94519 4.00328 4.06556 4.15590 4.21063 4.23320 4.30341 4.36647 4.38847 4.39377 4.47515 4.50206 4.60416 4.69409 4.71196 4.75979 4.79368 4.84630 4.90930 4.94015 5.01821 5.04515 5.05836 5.23807 5.27127 5.41670 5.44591 5.60978 5.78409 5.95323 6.03297 6.09605 6.19323 6.27437 6.31955 6.51170 6.90648 6.98153 7.41571 8.90125 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010278 B = 0.003472 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.655026 B = 8063.685452 C =10130.684491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.336 6.336 3 C 0.067 3.933 4 C 0.010 3.990 5 N -0.467 5.467 6 C 0.074 3.926 7 C -0.074 4.074 8 C 0.101 3.899 9 N -0.534 5.534 10 C 0.206 3.794 11 C -0.542 4.542 12 H 0.058 0.942 13 C 0.019 3.981 14 N -0.923 5.923 15 Si 0.943 3.057 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.270 1.270 19 C 0.076 3.924 20 C 0.079 3.921 21 N -0.547 5.547 22 C 0.016 3.984 23 C 0.064 3.936 24 O -0.402 6.402 25 C 0.069 3.931 26 C 0.018 3.982 27 C -0.111 4.111 28 H 0.065 0.935 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.184 0.816 32 H 0.177 0.823 33 H 0.040 0.960 34 H 0.103 0.897 35 H 0.002 0.998 36 H 0.005 0.995 37 H 0.261 0.739 38 H 0.029 0.971 39 H 0.083 0.917 40 H 0.034 0.966 41 H 0.050 0.950 42 H 0.039 0.961 43 H 0.097 0.903 44 H 0.058 0.942 45 H 0.121 0.879 46 H 0.058 0.942 47 H 0.117 0.883 48 H 0.079 0.921 49 H 0.039 0.961 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.258 10.891 5.173 12.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.249 6.249 3 C 0.020 3.980 4 C -0.147 4.147 5 N -0.176 5.176 6 C -0.084 4.084 7 C -0.076 4.076 8 C -0.027 4.027 9 N -0.257 5.257 10 C 0.079 3.921 11 C -0.581 4.581 12 H 0.076 0.924 13 C -0.181 4.181 14 N -0.563 5.563 15 Si 0.769 3.231 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.195 1.195 19 C -0.052 4.052 20 C -0.049 4.049 21 N -0.273 5.273 22 C -0.112 4.112 23 C -0.013 4.013 24 O -0.321 6.321 25 C -0.008 4.008 26 C -0.110 4.110 27 C -0.138 4.138 28 H 0.084 0.916 29 H 0.137 0.863 30 H 0.093 0.907 31 H 0.201 0.799 32 H 0.194 0.806 33 H 0.058 0.942 34 H 0.121 0.879 35 H 0.020 0.980 36 H 0.023 0.977 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.102 0.898 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.115 0.885 44 H 0.077 0.923 45 H 0.138 0.862 46 H 0.076 0.924 47 H 0.135 0.865 48 H 0.097 0.903 49 H 0.057 0.943 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.663 11.476 4.963 12.613 hybrid contribution 0.590 -2.459 -0.106 2.531 sum -1.073 9.017 4.857 10.298 Atomic orbital electron populations 1.23422 0.75949 1.05866 1.02660 1.86100 1.23988 1.26188 1.88610 1.20145 0.92796 0.86497 0.98589 1.23163 1.01364 0.86483 1.03739 1.67558 1.12404 1.26695 1.10918 1.22741 0.88224 0.99054 0.98399 1.20690 0.97541 0.92359 0.97057 1.20887 0.89249 1.01741 0.90808 1.62412 1.21454 1.29825 1.12059 1.19361 0.94950 0.85169 0.92623 1.21822 1.29191 0.97988 1.09127 0.92383 1.25642 0.96902 1.00174 0.95381 1.70066 1.41069 1.22214 1.22982 0.85838 0.80111 0.78737 0.78430 1.19783 1.21245 1.19503 1.21807 0.88766 0.98562 0.96082 1.21804 0.87198 0.98146 0.97800 1.62113 1.22645 1.28657 1.13853 1.22898 0.98334 0.89813 1.00106 1.22809 0.92509 1.02776 0.83181 1.87926 1.85492 1.34250 1.24411 1.22714 0.94004 0.86746 0.97360 1.22784 0.97533 1.01142 0.89545 1.21005 0.92377 0.98950 1.01445 0.91627 0.86303 0.90661 0.79934 0.80579 0.94171 0.87886 0.97986 0.97679 0.92963 0.95234 0.89833 0.94786 0.93142 0.94266 0.88507 0.92331 0.86158 0.92397 0.86504 0.90296 0.94315 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 9.82 113.37 1.11 1.41 16 2 O -0.34 -10.86 10.51 -92.56 -0.97 -11.84 16 3 C 0.07 2.32 6.71 22.60 0.15 2.47 16 4 C 0.01 0.31 10.22 84.82 0.87 1.18 16 5 N -0.47 -14.89 10.35 -195.44 -2.02 -16.91 16 6 C 0.07 2.33 10.88 84.68 0.92 3.25 16 7 C -0.07 -2.64 4.91 -19.79 -0.10 -2.73 16 8 C 0.10 3.58 4.97 85.56 0.42 4.01 16 9 N -0.53 -21.13 4.66 -905.36 -4.22 -25.35 16 10 C 0.21 10.32 4.72 85.56 0.40 10.72 16 11 C -0.54 -28.70 7.33 25.60 0.19 -28.51 16 12 H 0.06 3.01 5.95 -2.91 -0.02 2.99 16 13 C 0.02 1.03 5.45 84.65 0.46 1.49 16 14 N -0.92 -54.54 13.30 21.45 0.29 -54.25 16 15 Si 0.94 43.73 29.54 68.60 2.03 45.76 16 16 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 19 C 0.08 2.68 4.71 86.30 0.41 3.08 16 20 C 0.08 2.73 4.89 86.30 0.42 3.15 16 21 N -0.55 -16.30 4.73 -895.23 -4.23 -20.53 16 22 C 0.02 0.39 5.44 86.31 0.47 0.86 16 23 C 0.06 1.33 7.01 72.02 0.50 1.83 16 24 O -0.40 -9.80 10.83 -148.98 -1.61 -11.41 16 25 C 0.07 1.55 7.01 72.01 0.50 2.06 16 26 C 0.02 0.49 5.64 86.31 0.49 0.98 16 27 C -0.11 -4.36 8.64 22.56 0.19 -4.16 16 28 H 0.07 1.15 7.68 -2.39 -0.02 1.13 16 29 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 1.14 7.68 -2.39 -0.02 1.12 16 31 H 0.18 4.03 6.32 -2.91 -0.02 4.01 16 32 H 0.18 4.58 8.06 -2.91 -0.02 4.56 16 33 H 0.04 1.61 6.08 -2.39 -0.01 1.59 16 34 H 0.10 2.86 7.79 -2.39 -0.02 2.85 16 35 H 0.00 0.11 6.62 -2.39 -0.02 0.10 16 36 H 0.01 0.29 6.33 -2.39 -0.02 0.27 16 37 H 0.26 14.79 8.31 -92.71 -0.77 14.01 16 38 H 0.03 1.20 6.57 -2.38 -0.02 1.18 16 39 H 0.08 2.40 6.23 -2.39 -0.01 2.38 16 40 H 0.03 1.16 8.12 -2.39 -0.02 1.14 16 41 H 0.05 2.11 6.38 -2.38 -0.02 2.10 16 42 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.10 2.10 6.38 -2.39 -0.02 2.08 16 44 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 48 H 0.08 2.21 8.09 -2.39 -0.02 2.19 16 49 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 50 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -67.56 391.22 -2.39 -69.95 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.93 Total: 23.51 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 7.42 Total: 1.08 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -10.19 Total: -117.04 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -2.59 Total: -23.25 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -67.56 -2.39 -69.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290313052.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.073 kcal (2) G-P(sol) polarization free energy of solvation -67.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds