Wall clock time and date at job start Tue Mar 31 2020 18:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99848 * 2 1 4 4 C 1.46899 * 111.00001 * 123.95023 * 2 1 3 5 5 C 1.52999 * 109.47298 * 170.00072 * 4 2 1 6 6 C 1.52996 * 109.47195 * 180.02562 * 5 4 2 7 7 O 1.42901 * 109.47267 * 180.02562 * 6 5 4 8 8 C 1.35912 * 117.00171 * 180.02562 * 7 6 5 9 9 C 1.38753 * 120.47508 * 359.97159 * 8 7 6 10 10 N 1.31806 * 120.68012 * 180.02562 * 9 8 7 11 11 C 1.31875 * 121.78537 * 359.97438 * 10 9 8 12 12 C 1.38215 * 120.88410 * 0.02562 * 11 10 9 13 13 C 1.38576 * 119.22506 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.81144 * 180.02562 * 13 12 11 15 15 N 1.46500 * 109.46795 * 259.99749 * 14 13 12 16 16 C 1.34783 * 119.99877 * 179.97438 * 15 14 13 17 17 O 1.21276 * 119.99677 * 0.02562 * 16 15 14 18 18 C 1.50695 * 119.99850 * 180.02562 * 16 15 14 19 19 C 1.53003 * 109.46951 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47309 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99687 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99907 * 179.97438 * 20 19 18 23 23 N 1.31506 * 120.00310 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99489 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46922 * 90.00561 * 24 22 20 26 26 H 1.48503 * 109.46742 * 209.99543 * 24 22 20 27 27 H 1.48492 * 109.47305 * 329.99830 * 24 22 20 28 28 H 1.09000 * 109.47027 * 296.05190 * 1 2 3 29 29 H 1.09001 * 109.46951 * 56.05051 * 1 2 3 30 30 H 1.08992 * 109.47036 * 176.04604 * 1 2 3 31 31 H 1.08999 * 109.46526 * 183.95490 * 3 2 1 32 32 H 1.08999 * 109.46915 * 303.94570 * 3 2 1 33 33 H 1.08996 * 109.47304 * 63.95213 * 3 2 1 34 34 H 1.08998 * 109.46947 * 50.00097 * 4 2 1 35 35 H 1.09000 * 109.47336 * 290.00636 * 4 2 1 36 36 H 1.08998 * 109.47101 * 60.00119 * 5 4 2 37 37 H 1.09003 * 109.47007 * 299.99870 * 5 4 2 38 38 H 1.08998 * 109.47152 * 59.99963 * 6 5 4 39 39 H 1.09003 * 109.46883 * 299.99757 * 6 5 4 40 40 H 1.08002 * 119.65515 * 0.04521 * 9 8 7 41 41 H 1.08000 * 119.55788 * 180.28032 * 11 10 9 42 42 H 1.07998 * 120.38321 * 179.97438 * 12 11 10 43 43 H 1.08996 * 109.47115 * 19.99719 * 14 13 12 44 44 H 1.08996 * 109.47188 * 140.00028 * 14 13 12 45 45 H 0.96998 * 120.00381 * 0.02562 * 15 14 13 46 46 H 1.08996 * 109.47261 * 299.99932 * 18 16 15 47 47 H 1.08996 * 109.47056 * 60.00249 * 18 16 15 48 48 H 1.08999 * 109.46833 * 300.00447 * 19 18 16 49 49 H 1.09002 * 109.47121 * 59.99694 * 19 18 16 50 50 H 0.97003 * 120.00435 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.5045 -0.9553 0.9704 6 6 4.0526 -1.7535 2.1550 7 8 5.4621 -1.9299 1.9991 8 6 6.1085 -2.6238 2.9727 9 6 5.4093 -3.1281 4.0599 10 7 6.0322 -3.8011 5.0066 11 6 7.3315 -4.0222 4.9617 12 6 8.0953 -3.5514 3.9104 13 6 7.4805 -2.8386 2.8934 14 6 8.2788 -2.3093 1.7300 15 7 8.5583 -0.8862 1.9368 16 6 9.2644 -0.1976 1.0182 17 8 9.6680 -0.7561 0.0202 18 6 9.5524 1.2662 1.2312 19 6 10.3628 1.8037 0.0500 20 6 10.6514 3.2673 0.2633 21 1 10.2930 3.7643 1.1526 22 6 11.3738 3.9716 -0.6765 23 7 11.8115 3.3660 -1.7587 24 14 11.7309 5.7861 -0.4123 25 1 13.0125 5.9365 0.3225 26 1 11.8319 6.4673 -1.7280 27 1 10.6323 6.3968 0.3783 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 -1.0251 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5899 1.9163 -0.8525 33 1 1.7044 1.8724 0.9232 34 1 1.5090 -1.7406 1.1757 35 1 1.7975 -0.2247 2.0628 36 1 3.9909 0.0194 0.9324 37 1 3.7024 -1.4966 0.0453 38 1 3.5661 -2.7282 2.1926 39 1 3.8547 -1.2126 3.0804 40 1 4.3436 -2.9676 4.1310 41 1 7.8044 -4.5823 5.7549 42 1 9.1589 -3.7368 3.8820 43 1 9.2182 -2.8569 1.6548 44 1 7.7088 -2.4376 0.8098 45 1 8.2358 -0.4396 2.7352 46 1 8.6132 1.8141 1.3063 47 1 10.1223 1.3941 2.1515 48 1 11.3020 1.2557 -0.0256 49 1 9.7926 1.6757 -0.8701 50 1 12.3194 3.8616 -2.4200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291406498.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:17 Heat of formation + Delta-G solvation = -48.021364 kcal Electronic energy + Delta-G solvation = -28214.146000 eV Core-core repulsion = 24241.442997 eV Total energy + Delta-G solvation = -3972.703002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.11153 -39.03879 -38.73104 -37.84427 -35.23881 -33.42068 -33.09827 -32.28821 -30.92170 -30.45223 -27.96237 -27.23269 -27.05643 -25.24883 -24.01044 -22.76801 -22.27599 -21.43355 -21.08673 -19.66335 -18.41531 -17.26400 -17.08857 -16.84386 -16.47770 -15.79952 -15.75229 -15.50364 -15.30550 -15.10904 -14.93665 -14.66114 -14.42347 -14.25946 -13.91427 -13.46592 -13.36543 -13.08032 -12.78672 -12.60364 -12.46710 -12.41118 -12.14786 -12.12823 -11.91741 -11.83800 -11.73714 -11.59797 -11.13844 -10.97044 -10.91489 -10.58954 -10.02321 -9.92976 -9.78939 -9.63759 -9.15405 -9.00765 -8.78752 -8.76764 -8.69462 -8.30044 -5.94167 -3.98454 0.75573 0.88527 2.63189 3.30151 3.34253 3.34397 3.40383 3.42993 3.58704 3.80154 4.11935 4.22065 4.40555 4.45408 4.47702 4.49263 4.61472 4.70202 4.78181 4.88125 4.89949 4.97965 5.05736 5.14363 5.21267 5.26149 5.26789 5.32547 5.40686 5.46612 5.46677 5.59414 5.63837 5.70633 5.83091 5.87633 5.96392 6.20729 6.26077 6.27762 6.58103 6.59824 6.70894 6.89657 6.92528 7.60882 7.76622 7.89334 7.91408 8.09732 8.41079 8.81512 9.10280 9.64876 11.16791 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.006865 B = 0.002864 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4077.600818 B = 9772.718181 C =13143.635632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.547 5.547 3 C 0.017 3.983 4 C 0.059 3.941 5 C -0.119 4.119 6 C 0.059 3.941 7 O -0.296 6.296 8 C 0.098 3.902 9 C 0.013 3.987 10 N -0.448 5.448 11 C 0.057 3.943 12 C -0.114 4.114 13 C -0.092 4.092 14 C 0.169 3.831 15 N -0.736 5.736 16 C 0.512 3.488 17 O -0.534 6.534 18 C -0.129 4.129 19 C 0.037 3.963 20 C -0.527 4.527 21 H 0.055 0.945 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.892 3.108 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.027 0.973 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.145 0.855 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.396 0.604 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.023 0.977 49 H 0.024 0.976 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.342 -13.464 12.529 28.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.271 5.271 3 C -0.131 4.131 4 C -0.069 4.069 5 C -0.157 4.157 6 C -0.017 4.017 7 O -0.208 6.208 8 C 0.049 3.951 9 C -0.145 4.145 10 N -0.158 5.158 11 C -0.100 4.100 12 C -0.134 4.134 13 C -0.101 4.101 14 C 0.045 3.955 15 N -0.391 5.391 16 C 0.300 3.700 17 O -0.409 6.409 18 C -0.169 4.169 19 C 0.000 4.000 20 C -0.565 4.565 21 H 0.073 0.927 22 C -0.144 4.144 23 N -0.528 5.528 24 Si 0.720 3.280 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.175 0.825 41 H 0.177 0.823 42 H 0.163 0.837 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.230 0.770 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.042 0.958 49 H 0.042 0.958 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.206 -14.281 11.662 28.100 hybrid contribution 0.039 1.825 0.731 1.966 sum -21.167 -12.456 12.393 27.510 Atomic orbital electron populations 1.22389 0.86997 1.02327 1.00664 1.61913 1.07982 1.14470 1.42721 1.22506 1.01691 0.88215 1.00658 1.21974 0.94491 0.98644 0.91765 1.21523 0.94461 1.01586 0.98102 1.22818 0.78758 1.00365 0.99770 1.86175 1.22302 1.69046 1.43242 1.19938 0.92335 0.93314 0.89502 1.22899 1.00651 0.99708 0.91233 1.67501 1.11094 1.11310 1.25851 1.22655 0.89354 0.99821 0.98201 1.22072 1.01772 0.96475 0.93104 1.19859 0.91019 1.00926 0.98306 1.19913 0.98192 0.82770 0.94596 1.46169 1.58207 1.09462 1.25215 1.21550 0.76178 0.90312 0.81949 1.90671 1.50893 1.71095 1.28273 1.21855 1.02368 0.88817 1.03821 1.18897 0.94988 0.94795 0.91340 1.21222 1.34558 0.94911 1.05797 0.92655 1.25022 0.95869 0.98279 0.95206 1.69995 1.36862 1.36205 1.09754 0.86601 0.78621 0.85334 0.77446 1.20691 1.21225 1.19907 0.95632 0.91112 0.91308 0.90522 0.91114 0.95486 0.90461 0.94467 0.90197 0.89565 0.91679 0.91799 0.82546 0.82315 0.83694 0.90629 0.90260 0.77049 0.90323 0.90319 0.95830 0.95790 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.57 60.07 0.57 0.73 16 2 N -0.55 -4.47 5.02 -251.26 -1.26 -5.73 16 3 C 0.02 0.14 9.32 60.07 0.56 0.70 16 4 C 0.06 0.41 4.96 -3.83 -0.02 0.39 16 5 C -0.12 -0.95 5.51 -26.73 -0.15 -1.10 16 6 C 0.06 0.44 4.75 37.16 0.18 0.61 16 7 O -0.30 -3.18 9.50 -19.46 -0.18 -3.36 16 8 C 0.10 1.03 6.68 -39.07 -0.26 0.77 16 9 C 0.01 0.13 10.22 -17.37 -0.18 -0.05 16 10 N -0.45 -4.68 10.35 -13.12 -0.14 -4.82 16 11 C 0.06 0.51 11.18 -17.54 -0.20 0.31 16 12 C -0.11 -1.02 9.78 -39.47 -0.39 -1.41 16 13 C -0.09 -0.99 5.30 -104.18 -0.55 -1.55 16 14 C 0.17 2.22 5.54 -5.19 -0.03 2.19 16 15 N -0.74 -10.77 5.55 -61.48 -0.34 -11.12 16 16 C 0.51 10.02 7.83 -10.98 -0.09 9.93 16 17 O -0.53 -12.77 15.98 5.56 0.09 -12.68 16 18 C -0.13 -2.65 5.64 -27.88 -0.16 -2.81 16 19 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 20 C -0.53 -15.05 9.11 -34.44 -0.31 -15.36 16 21 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -27.59 13.29 55.43 0.74 -26.86 16 24 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 31 H 0.08 0.67 6.47 -51.93 -0.34 0.33 16 32 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.08 0.45 8.06 -51.93 -0.42 0.03 16 35 H 0.04 0.24 8.12 -51.93 -0.42 -0.19 16 36 H 0.08 0.73 6.55 -51.93 -0.34 0.39 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.39 7.68 -51.93 -0.40 -0.01 16 39 H 0.06 0.40 7.68 -51.93 -0.40 0.00 16 40 H 0.16 1.13 6.32 -52.49 -0.33 0.80 16 41 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.08 0.98 8.04 -51.93 -0.42 0.57 16 44 H 0.08 1.16 7.93 -51.93 -0.41 0.75 16 45 H 0.40 4.90 8.46 -40.82 -0.35 4.56 16 46 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 47 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 48 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 49 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 50 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 414.42 15.07 6.25 6.25 Total: -1.00 -35.80 414.42 -9.53 -45.33 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -8.43 Total: 0.40 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.23 Total: -4.16 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -1.00 Total: -48.52 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.10 Total: -16.05 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.80 -9.53 -45.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291406498.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.688 kcal (2) G-P(sol) polarization free energy of solvation -35.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds