Wall clock time and date at job start Tue Mar 31 2020 18:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46497 * 120.00189 * 2 1 4 4 C 1.50704 * 109.46879 * 269.99531 * 3 2 1 5 5 H 1.07998 * 120.00086 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99704 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99833 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00342 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47179 * 89.99278 * 8 6 4 10 10 H 1.48501 * 109.47276 * 209.99934 * 8 6 4 11 11 H 1.48503 * 109.46644 * 329.99449 * 8 6 4 12 12 C 1.34781 * 119.99629 * 179.97438 * 2 1 3 13 13 O 1.21285 * 119.99882 * 185.70162 * 12 2 1 14 14 C 1.50705 * 120.00181 * 5.70730 * 12 2 1 15 15 H 1.08993 * 109.46731 * 305.46108 * 14 12 2 16 16 C 1.52999 * 109.47242 * 65.45907 * 14 12 2 17 17 C 1.53005 * 109.46767 * 60.00109 * 16 14 12 18 18 C 1.52991 * 109.47178 * 60.00323 * 17 16 14 19 19 C 1.52999 * 109.47008 * 299.99530 * 18 17 16 20 20 H 1.09004 * 109.47066 * 300.00111 * 19 18 17 21 21 C 1.50699 * 109.47452 * 180.02562 * 19 18 17 22 22 O 1.21280 * 120.00109 * 240.00531 * 21 19 18 23 23 N 1.34777 * 119.99924 * 59.99569 * 21 19 18 24 24 C 1.46499 * 120.00047 * 0.02562 * 23 21 19 25 25 C 1.46508 * 120.00068 * 179.97438 * 23 21 19 26 26 C 1.53004 * 109.46590 * 90.00581 * 25 23 21 27 27 C 1.47200 * 109.46938 * 179.97438 * 26 25 23 28 28 N 9.86698 * 150.26979 * 205.64111 * 12 1 2 29 29 C 1.52995 * 109.47140 * 60.00306 * 19 18 17 30 30 H 1.08995 * 109.47253 * 272.31152 * 1 2 3 31 31 H 1.09005 * 109.46674 * 32.31410 * 1 2 3 32 32 H 1.09004 * 109.47381 * 152.30774 * 1 2 3 33 33 H 1.08996 * 109.47286 * 29.99920 * 3 2 1 34 34 H 1.08999 * 109.46743 * 150.00236 * 3 2 1 35 35 H 0.97009 * 120.00145 * 180.02562 * 7 6 4 36 36 H 1.08994 * 109.46994 * 180.02562 * 16 14 12 37 37 H 1.08996 * 109.47303 * 300.00205 * 16 14 12 38 38 H 1.09005 * 109.46728 * 180.02562 * 17 16 14 39 39 H 1.08994 * 109.47313 * 299.99743 * 17 16 14 40 40 H 1.08998 * 109.47177 * 180.02562 * 18 17 16 41 41 H 1.08994 * 109.47471 * 59.99517 * 18 17 16 42 42 H 1.09001 * 109.47249 * 269.99620 * 24 23 21 43 43 H 1.09002 * 109.47075 * 29.99343 * 24 23 21 44 44 H 1.08997 * 109.47257 * 149.99540 * 24 23 21 45 45 H 1.08994 * 109.47272 * 330.00683 * 25 23 21 46 46 H 1.08995 * 109.47491 * 210.00296 * 25 23 21 47 47 H 1.08994 * 109.47229 * 60.00076 * 26 25 23 48 48 H 1.09003 * 109.47265 * 300.00021 * 26 25 23 49 49 H 1.09004 * 109.47300 * 59.99949 * 29 19 18 50 50 H 1.09004 * 109.47402 * 180.02562 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0983 1.0956 -2.2417 6 6 3.1262 2.8778 -1.6728 7 7 3.3459 3.2571 -2.9127 8 14 3.7331 3.9291 -0.2530 9 1 5.1065 3.5079 0.1230 10 1 3.7480 5.3559 -0.6646 11 1 2.8270 3.7592 0.9112 12 6 2.1388 -1.1673 0.0005 13 8 3.3472 -1.1699 0.1049 14 6 1.3909 -2.4692 -0.1287 15 1 0.6235 -2.5254 0.6433 16 6 0.7332 -2.5449 -1.5080 17 6 1.8105 -2.4659 -2.5916 18 6 2.7859 -3.6330 -2.4271 19 6 3.4436 -3.5573 -1.0477 20 1 3.9846 -2.6156 -0.9543 21 6 4.4049 -4.7065 -0.8858 22 8 4.2442 -5.5101 0.0082 23 7 5.4431 -4.8414 -1.7346 24 6 5.6374 -3.8705 -2.8143 25 6 6.3780 -5.9583 -1.5768 26 6 5.8857 -7.1546 -2.3939 27 6 6.8253 -8.2767 -2.2359 28 7 7.5466 -9.1450 -2.1134 29 6 2.3664 -3.6363 0.0359 30 1 -0.3633 0.0414 1.0268 31 1 -0.3633 0.8686 -0.5494 32 1 -0.3634 -0.9100 -0.4776 33 1 1.6085 2.0283 0.5138 34 1 3.1499 1.1382 0.5138 35 1 3.8228 4.0830 -3.0900 36 1 0.1919 -3.4863 -1.6013 37 1 0.0383 -1.7134 -1.6253 38 1 1.3419 -2.5193 -3.5744 39 1 2.3515 -1.5243 -2.4982 40 1 3.5536 -3.5764 -3.1988 41 1 2.2450 -4.5746 -2.5205 42 1 5.1028 -4.2043 -3.7037 43 1 5.2534 -2.8991 -2.5028 44 1 6.7004 -3.7857 -3.0398 45 1 6.4373 -6.2366 -0.5247 46 1 7.3648 -5.6588 -1.9296 47 1 5.8264 -6.8763 -3.4460 48 1 4.8988 -7.4542 -2.0411 49 1 1.8254 -4.5780 -0.0575 50 1 2.8349 -3.5820 1.0186 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299530781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:36 Heat of formation + Delta-G solvation = -38.877670 kcal Electronic energy + Delta-G solvation = -30464.993275 eV Core-core repulsion = 26492.686773 eV Total energy + Delta-G solvation = -3972.306502 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.82834 -39.51441 -37.27049 -36.61260 -35.80138 -35.04684 -32.83861 -32.34342 -30.82247 -30.56944 -28.37396 -27.02647 -26.09571 -25.15023 -23.66078 -22.62212 -21.92751 -20.38621 -19.17899 -18.22184 -17.96502 -17.08876 -16.93220 -16.42935 -15.94621 -15.55698 -15.44444 -15.19225 -14.95537 -14.74501 -14.14749 -14.10725 -13.63857 -13.48092 -13.33713 -13.06152 -12.94309 -12.81007 -12.71346 -12.46380 -12.37130 -12.30699 -12.17060 -12.04687 -11.93710 -11.82049 -11.64683 -11.41092 -11.27394 -11.05206 -10.82781 -10.61783 -10.53562 -10.29598 -10.14221 -9.97582 -9.58937 -9.51687 -8.89172 -8.75130 -8.63939 -7.71033 -6.14726 -4.13296 2.34829 2.49830 2.69770 2.86591 3.25393 3.29938 3.31734 3.34156 3.79933 3.84756 4.35005 4.40658 4.65428 4.67703 4.78849 4.85852 4.96715 5.03449 5.08597 5.18207 5.24553 5.31198 5.32426 5.38636 5.41406 5.50115 5.54929 5.58199 5.61336 5.69351 5.80020 5.80827 5.84877 5.99717 6.09397 6.12369 6.21341 6.30100 6.38241 6.45027 6.46974 6.61384 6.69919 6.93441 7.23178 7.25452 7.32101 7.56124 8.16676 8.23454 8.41690 8.86756 8.95760 9.46565 10.98222 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014949 B = 0.003078 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.558617 B = 9094.298071 C = 9955.562382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.595 5.595 3 C 0.213 3.787 4 C -0.527 4.527 5 H 0.076 0.924 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.266 1.266 12 C 0.517 3.483 13 O -0.542 6.542 14 C -0.111 4.111 15 H 0.091 0.909 16 C -0.117 4.117 17 C -0.123 4.123 18 C -0.116 4.116 19 C -0.123 4.123 20 H 0.140 0.860 21 C 0.527 3.473 22 O -0.543 6.543 23 N -0.619 5.619 24 C 0.071 3.929 25 C 0.120 3.880 26 C -0.043 4.043 27 C 0.213 3.787 28 N -0.438 5.438 29 C -0.071 4.071 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.027 0.973 34 H 0.037 0.963 35 H 0.264 0.736 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.111 0.889 48 H 0.112 0.888 49 H 0.068 0.932 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.538 -14.334 -0.603 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.326 5.326 3 C 0.092 3.908 4 C -0.565 4.565 5 H 0.094 0.906 6 C -0.129 4.129 7 N -0.536 5.536 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.304 3.696 13 O -0.421 6.421 14 C -0.132 4.132 15 H 0.109 0.891 16 C -0.154 4.154 17 C -0.160 4.160 18 C -0.153 4.153 19 C -0.144 4.144 20 H 0.157 0.843 21 C 0.317 3.683 22 O -0.419 6.419 23 N -0.353 5.353 24 C -0.072 4.072 25 C -0.005 4.005 26 C -0.085 4.085 27 C -0.106 4.106 28 N -0.115 5.115 29 C -0.109 4.109 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.110 0.890 46 H 0.104 0.896 47 H 0.129 0.871 48 H 0.130 0.870 49 H 0.087 0.913 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.836 -15.868 0.010 15.974 hybrid contribution -0.010 1.152 0.428 1.229 sum -1.846 -14.715 0.438 14.837 Atomic orbital electron populations 1.21993 0.81204 1.03559 1.00748 1.47797 1.06181 1.07099 1.71557 1.19671 0.92554 0.80192 0.98347 1.21302 1.36889 1.07130 0.91190 0.90639 1.24834 0.95285 0.97325 0.95461 1.69887 1.41500 1.23597 1.18585 0.86883 0.80131 0.79824 0.83049 1.19938 1.21138 1.19123 1.20301 0.87840 0.84957 0.76456 1.90512 1.14375 1.86829 1.50383 1.21400 0.98696 0.93863 0.99279 0.89110 1.21737 0.98154 1.02522 0.92985 1.21557 0.96722 0.99497 0.98260 1.21751 0.99137 0.99000 0.95462 1.21761 0.96360 0.99390 0.96846 0.84250 1.21048 0.80869 0.86269 0.80127 1.90657 1.73708 1.44605 1.32956 1.47816 1.28097 1.27273 1.32071 1.22116 1.02403 0.93181 0.89499 1.21270 0.92538 0.85057 1.01598 1.19710 0.96211 0.88712 1.03852 1.28985 0.94010 0.94340 0.93226 1.81224 1.10449 1.11067 1.08731 1.21039 0.94861 0.96261 0.98723 0.93785 0.90749 0.90702 0.95458 0.94469 0.92575 0.91327 0.90238 0.91577 0.90246 0.90654 0.92189 0.91925 0.89454 0.90995 0.89021 0.89613 0.87138 0.86955 0.91309 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 9.90 59.85 0.59 1.56 16 2 N -0.60 -11.27 2.86 -182.95 -0.52 -11.79 16 3 C 0.21 4.92 4.28 -5.19 -0.02 4.89 16 4 C -0.53 -14.06 9.94 -34.44 -0.34 -14.40 16 5 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 6 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 7 N -0.90 -26.25 13.96 55.43 0.77 -25.47 16 8 Si 0.87 20.78 27.47 -169.99 -4.67 16.11 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 12 C 0.52 9.41 5.53 -10.98 -0.06 9.35 16 13 O -0.54 -11.69 13.03 5.55 0.07 -11.62 16 14 C -0.11 -1.49 2.18 -91.77 -0.20 -1.69 16 15 H 0.09 1.04 7.76 -51.93 -0.40 0.64 16 16 C -0.12 -1.36 5.08 -26.73 -0.14 -1.49 16 17 C -0.12 -1.56 5.70 -26.73 -0.15 -1.72 16 18 C -0.12 -1.28 4.84 -26.74 -0.13 -1.41 16 19 C -0.12 -1.65 1.43 -91.78 -0.13 -1.79 16 20 H 0.14 2.31 4.57 -51.93 -0.24 2.07 16 21 C 0.53 6.89 7.08 -10.99 -0.08 6.81 16 22 O -0.54 -8.54 15.56 5.56 0.09 -8.45 16 23 N -0.62 -6.08 2.87 -181.57 -0.52 -6.61 16 24 C 0.07 0.57 8.85 59.85 0.53 1.10 16 25 C 0.12 0.96 5.41 -4.04 -0.02 0.94 16 26 C -0.04 -0.28 6.03 -29.52 -0.18 -0.45 16 27 C 0.21 1.94 15.43 -20.78 -0.32 1.62 16 28 N -0.44 -5.36 18.53 42.14 0.78 -4.58 16 29 C -0.07 -0.96 3.69 -26.73 -0.10 -1.06 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 32 H 0.07 0.86 3.96 -51.93 -0.21 0.65 16 33 H 0.03 0.61 7.13 -51.93 -0.37 0.24 16 34 H 0.04 0.93 6.78 -51.93 -0.35 0.57 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.93 5.24 -51.93 -0.27 0.65 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.34 7.22 -51.93 -0.37 0.96 16 40 H 0.08 0.73 4.53 -51.93 -0.24 0.49 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.39 6.95 -51.93 -0.36 0.03 16 43 H 0.09 0.90 6.01 -51.93 -0.31 0.59 16 44 H 0.07 0.46 7.89 -51.93 -0.41 0.05 16 45 H 0.09 0.90 7.42 -51.93 -0.39 0.52 16 46 H 0.09 0.53 7.89 -51.93 -0.41 0.12 16 47 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 50 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -34.51 388.74 -6.70 -41.22 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.72 Total: 1.15 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.85 Total: 4.20 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.51 Total: -48.45 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.16 Total: -20.08 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.51 -6.70 -41.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299530781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.341 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds