Wall clock time and date at job start Tue Mar 31 2020 18:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46497 * 120.00189 * 2 1 4 4 C 1.50704 * 109.46879 * 269.99531 * 3 2 1 5 5 H 1.07998 * 120.00086 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99704 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99833 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00342 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47179 * 89.99278 * 8 6 4 10 10 H 1.48501 * 109.47276 * 209.99934 * 8 6 4 11 11 H 1.48503 * 109.46644 * 329.99449 * 8 6 4 12 12 C 1.34781 * 119.99629 * 179.97438 * 2 1 3 13 13 O 1.21285 * 119.99882 * 185.70162 * 12 2 1 14 14 C 1.50705 * 120.00181 * 5.70730 * 12 2 1 15 15 H 1.08993 * 109.46731 * 305.46108 * 14 12 2 16 16 C 1.52999 * 109.47242 * 65.45907 * 14 12 2 17 17 C 1.53005 * 109.46767 * 60.00109 * 16 14 12 18 18 C 1.52991 * 109.47178 * 60.00323 * 17 16 14 19 19 C 1.52999 * 109.47008 * 299.99530 * 18 17 16 20 20 H 1.09004 * 109.47066 * 300.00111 * 19 18 17 21 21 C 1.50699 * 109.47452 * 180.02562 * 19 18 17 22 22 O 1.21280 * 120.00109 * 240.00531 * 21 19 18 23 23 N 1.34777 * 119.99924 * 59.99569 * 21 19 18 24 24 C 1.46499 * 120.00047 * 0.02562 * 23 21 19 25 25 C 1.46508 * 120.00068 * 179.97438 * 23 21 19 26 26 C 1.53004 * 109.46590 * 90.00581 * 25 23 21 27 27 C 1.47200 * 109.46938 * 179.97438 * 26 25 23 28 28 N 9.86698 * 150.26979 * 205.64111 * 12 1 2 29 29 C 1.52995 * 109.47140 * 60.00306 * 19 18 17 30 30 H 1.08995 * 109.47253 * 272.31152 * 1 2 3 31 31 H 1.09005 * 109.46674 * 32.31410 * 1 2 3 32 32 H 1.09004 * 109.47381 * 152.30774 * 1 2 3 33 33 H 1.08996 * 109.47286 * 29.99920 * 3 2 1 34 34 H 1.08999 * 109.46743 * 150.00236 * 3 2 1 35 35 H 0.97009 * 120.00145 * 180.02562 * 7 6 4 36 36 H 1.08994 * 109.46994 * 180.02562 * 16 14 12 37 37 H 1.08996 * 109.47303 * 300.00205 * 16 14 12 38 38 H 1.09005 * 109.46728 * 180.02562 * 17 16 14 39 39 H 1.08994 * 109.47313 * 299.99743 * 17 16 14 40 40 H 1.08998 * 109.47177 * 180.02562 * 18 17 16 41 41 H 1.08994 * 109.47471 * 59.99517 * 18 17 16 42 42 H 1.09001 * 109.47249 * 269.99620 * 24 23 21 43 43 H 1.09002 * 109.47075 * 29.99343 * 24 23 21 44 44 H 1.08997 * 109.47257 * 149.99540 * 24 23 21 45 45 H 1.08994 * 109.47272 * 330.00683 * 25 23 21 46 46 H 1.08995 * 109.47491 * 210.00296 * 25 23 21 47 47 H 1.08994 * 109.47229 * 60.00076 * 26 25 23 48 48 H 1.09003 * 109.47265 * 300.00021 * 26 25 23 49 49 H 1.09004 * 109.47300 * 59.99949 * 29 19 18 50 50 H 1.09004 * 109.47402 * 180.02562 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0983 1.0956 -2.2417 6 6 3.1262 2.8778 -1.6728 7 7 3.3459 3.2571 -2.9127 8 14 3.7331 3.9291 -0.2530 9 1 5.1065 3.5079 0.1230 10 1 3.7480 5.3559 -0.6646 11 1 2.8270 3.7592 0.9112 12 6 2.1388 -1.1673 0.0005 13 8 3.3472 -1.1699 0.1049 14 6 1.3909 -2.4692 -0.1287 15 1 0.6235 -2.5254 0.6433 16 6 0.7332 -2.5449 -1.5080 17 6 1.8105 -2.4659 -2.5916 18 6 2.7859 -3.6330 -2.4271 19 6 3.4436 -3.5573 -1.0477 20 1 3.9846 -2.6156 -0.9543 21 6 4.4049 -4.7065 -0.8858 22 8 4.2442 -5.5101 0.0082 23 7 5.4431 -4.8414 -1.7346 24 6 5.6374 -3.8705 -2.8143 25 6 6.3780 -5.9583 -1.5768 26 6 5.8857 -7.1546 -2.3939 27 6 6.8253 -8.2767 -2.2359 28 7 7.5466 -9.1450 -2.1134 29 6 2.3664 -3.6363 0.0359 30 1 -0.3633 0.0414 1.0268 31 1 -0.3633 0.8686 -0.5494 32 1 -0.3634 -0.9100 -0.4776 33 1 1.6085 2.0283 0.5138 34 1 3.1499 1.1382 0.5138 35 1 3.8228 4.0830 -3.0900 36 1 0.1919 -3.4863 -1.6013 37 1 0.0383 -1.7134 -1.6253 38 1 1.3419 -2.5193 -3.5744 39 1 2.3515 -1.5243 -2.4982 40 1 3.5536 -3.5764 -3.1988 41 1 2.2450 -4.5746 -2.5205 42 1 5.1028 -4.2043 -3.7037 43 1 5.2534 -2.8991 -2.5028 44 1 6.7004 -3.7857 -3.0398 45 1 6.4373 -6.2366 -0.5247 46 1 7.3648 -5.6588 -1.9296 47 1 5.8264 -6.8763 -3.4460 48 1 4.8988 -7.4542 -2.0411 49 1 1.8254 -4.5780 -0.0575 50 1 2.8349 -3.5820 1.0186 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299530781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:35 Heat of formation + Delta-G solvation = -61.374309 kcal Electronic energy + Delta-G solvation = -30465.968802 eV Core-core repulsion = 26492.686773 eV Total energy + Delta-G solvation = -3973.282029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.93108 -40.67201 -38.16872 -37.71564 -36.69837 -36.57708 -34.69657 -33.37074 -31.89281 -31.57192 -30.08589 -27.77921 -27.41557 -25.98966 -25.18332 -23.60746 -23.23468 -21.61301 -20.11054 -19.53674 -19.06897 -18.69490 -17.97949 -17.53769 -17.11865 -16.84622 -16.52414 -16.20878 -16.10567 -15.85259 -15.62028 -15.04320 -14.79933 -14.63075 -14.38644 -14.32170 -14.09673 -13.76852 -13.69485 -13.61603 -13.58175 -13.45904 -13.25747 -13.14300 -13.09498 -12.91471 -12.83623 -12.61190 -12.56839 -12.36387 -12.04261 -11.94614 -11.83035 -11.71528 -11.62838 -11.29973 -10.95862 -10.78477 -10.55213 -10.14537 -9.70084 -9.26843 -8.29342 -6.32059 1.34478 1.37514 1.45229 1.55854 1.73101 1.78314 1.90958 2.08182 2.33289 2.44859 3.05372 3.12751 3.50786 3.71227 3.81261 3.91367 4.04309 4.11295 4.26258 4.30075 4.33075 4.34524 4.45941 4.51832 4.53490 4.63789 4.70075 4.71535 4.74997 4.80527 4.86872 4.87934 4.96806 4.98592 5.01810 5.03766 5.09421 5.12841 5.24634 5.36034 5.40230 5.43997 5.51510 5.55550 5.59822 5.73565 6.30984 6.34183 6.55250 6.69460 6.81664 7.20048 7.28699 7.54053 8.86659 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014949 B = 0.003078 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.558617 B = 9094.298071 C = 9955.562382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.606 5.606 3 C 0.221 3.779 4 C -0.523 4.523 5 H 0.040 0.960 6 C 0.017 3.983 7 N -0.941 5.941 8 Si 0.937 3.063 9 H -0.278 1.278 10 H -0.278 1.278 11 H -0.245 1.245 12 C 0.507 3.493 13 O -0.585 6.585 14 C -0.100 4.100 15 H 0.120 0.880 16 C -0.113 4.113 17 C -0.122 4.122 18 C -0.107 4.107 19 C -0.122 4.122 20 H 0.103 0.897 21 C 0.525 3.475 22 O -0.575 6.575 23 N -0.611 5.611 24 C 0.066 3.934 25 C 0.117 3.883 26 C -0.031 4.031 27 C 0.241 3.759 28 N -0.496 5.496 29 C -0.068 4.068 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.041 0.959 34 H 0.016 0.984 35 H 0.267 0.733 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.026 0.974 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.108 0.892 47 H 0.146 0.854 48 H 0.115 0.885 49 H 0.090 0.910 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.206 -15.547 -0.735 16.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.337 5.337 3 C 0.099 3.901 4 C -0.562 4.562 5 H 0.058 0.942 6 C -0.182 4.182 7 N -0.582 5.582 8 Si 0.761 3.239 9 H -0.204 1.204 10 H -0.203 1.203 11 H -0.168 1.168 12 C 0.297 3.703 13 O -0.467 6.467 14 C -0.121 4.121 15 H 0.138 0.862 16 C -0.150 4.150 17 C -0.160 4.160 18 C -0.145 4.145 19 C -0.143 4.143 20 H 0.121 0.879 21 C 0.315 3.685 22 O -0.454 6.454 23 N -0.343 5.343 24 C -0.075 4.075 25 C -0.007 4.007 26 C -0.072 4.072 27 C -0.076 4.076 28 N -0.174 5.174 29 C -0.106 4.106 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.059 0.941 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.044 0.956 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.077 0.923 44 H 0.111 0.889 45 H 0.088 0.912 46 H 0.126 0.874 47 H 0.164 0.836 48 H 0.133 0.867 49 H 0.109 0.891 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.532 -17.089 -0.134 17.450 hybrid contribution 0.533 1.533 0.405 1.673 sum -3.000 -15.555 0.271 15.844 Atomic orbital electron populations 1.22275 0.78173 1.04745 1.02710 1.47898 1.08138 1.05904 1.71748 1.19303 0.92553 0.82688 0.95592 1.21497 1.36039 1.06423 0.92233 0.94214 1.25681 0.95621 0.98886 0.97975 1.70022 1.42915 1.24435 1.20792 0.85877 0.79490 0.78103 0.80458 1.20419 1.20327 1.16836 1.21266 0.87688 0.86283 0.75038 1.90506 1.16580 1.87621 1.51964 1.21438 0.98720 0.90444 1.01502 0.86165 1.21786 0.97672 1.04569 0.90986 1.21519 0.97113 0.97557 0.99791 1.21730 0.99218 0.99268 0.94256 1.21631 0.96457 0.97828 0.98365 0.87946 1.20969 0.81547 0.85778 0.80234 1.90639 1.74757 1.45739 1.34282 1.47799 1.27155 1.27698 1.31619 1.22257 1.04164 0.91536 0.89584 1.21371 0.93230 0.85175 1.00911 1.19768 0.95171 0.86741 1.05523 1.29370 0.93029 0.93800 0.91393 1.81257 1.12339 1.12975 1.10810 1.21020 0.95038 0.97158 0.97403 0.91114 0.91771 0.87667 0.94146 0.96617 0.92440 0.87433 0.90144 0.89897 0.95557 0.89428 0.89619 0.89074 0.92299 0.88860 0.91223 0.87377 0.83621 0.86694 0.89137 0.93760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.66 9.90 127.77 1.26 2.92 16 2 N -0.61 -22.94 2.86 -851.11 -2.43 -25.37 16 3 C 0.22 10.35 4.28 85.63 0.37 10.72 16 4 C -0.52 -28.95 9.94 25.60 0.25 -28.69 16 5 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 6 C 0.02 0.94 5.47 84.65 0.46 1.40 16 7 N -0.94 -56.82 13.96 21.45 0.30 -56.52 16 8 Si 0.94 43.35 27.47 68.60 1.88 45.23 16 9 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 12 C 0.51 18.71 5.53 87.66 0.49 19.19 16 13 O -0.59 -26.57 13.03 -3.04 -0.04 -26.61 16 14 C -0.10 -2.51 2.18 -11.54 -0.03 -2.53 16 15 H 0.12 2.34 7.76 -2.39 -0.02 2.32 16 16 C -0.11 -2.32 5.08 30.60 0.16 -2.16 16 17 C -0.12 -2.98 5.70 30.59 0.17 -2.80 16 18 C -0.11 -2.18 4.84 30.59 0.15 -2.03 16 19 C -0.12 -3.26 1.43 -11.54 -0.02 -3.27 16 20 H 0.10 3.62 4.57 -2.38 -0.01 3.60 16 21 C 0.52 13.42 7.08 87.66 0.62 14.04 16 22 O -0.57 -17.91 15.56 -3.03 -0.05 -17.96 16 23 N -0.61 -11.15 2.87 -846.75 -2.43 -13.58 16 24 C 0.07 0.97 8.85 127.77 1.13 2.10 16 25 C 0.12 1.67 5.41 86.38 0.47 2.13 16 26 C -0.03 -0.31 6.03 28.79 0.17 -0.13 16 27 C 0.24 4.02 15.43 89.45 1.38 5.40 16 28 N -0.50 -11.87 18.53 20.00 0.37 -11.50 16 29 C -0.07 -1.79 3.69 30.59 0.11 -1.68 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.83 8.09 -2.38 -0.02 1.81 16 32 H 0.11 2.11 3.96 -2.39 -0.01 2.10 16 33 H 0.04 1.78 7.13 -2.39 -0.02 1.77 16 34 H 0.02 0.80 6.78 -2.39 -0.02 0.79 16 35 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 36 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.65 5.24 -2.39 -0.01 1.63 16 38 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.03 0.92 7.22 -2.39 -0.02 0.90 16 40 H 0.09 1.53 4.53 -2.39 -0.01 1.52 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.09 0.84 6.95 -2.39 -0.02 0.82 16 43 H 0.06 1.24 6.01 -2.39 -0.01 1.23 16 44 H 0.09 0.98 7.89 -2.39 -0.02 0.96 16 45 H 0.07 1.34 7.42 -2.39 -0.02 1.32 16 46 H 0.11 1.07 7.89 -2.39 -0.02 1.05 16 47 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.09 2.00 8.10 -2.38 -0.02 1.98 16 50 H 0.04 1.39 8.10 -2.39 -0.02 1.37 16 Total: -1.00 -81.56 388.74 5.66 -75.91 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.90 Total: 15.79 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 7.16 Total: 14.60 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -4.19 Total: -106.97 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.09 Total: -44.57 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.88 Total: 45.23 kcal Total: -81.56 5.66 -75.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299530781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.533 kcal (2) G-P(sol) polarization free energy of solvation -81.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds