Wall clock time and date at job start Tue Mar 31 2020 18:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 119.99897 * 2 1 4 4 C 1.50702 * 109.46736 * 89.99871 * 3 2 1 5 5 H 1.08006 * 119.99991 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00127 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99427 * 0.27944 * 6 4 3 8 8 Si 1.86797 * 120.00024 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47527 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47027 * 120.00301 * 8 6 4 11 11 H 1.48498 * 109.47268 * 239.99958 * 8 6 4 12 12 C 1.34777 * 119.99926 * 180.02562 * 2 1 3 13 13 O 1.21286 * 119.99885 * 184.02307 * 12 2 1 14 14 C 1.50700 * 120.00300 * 4.02465 * 12 2 1 15 15 H 1.09001 * 109.46960 * 47.11452 * 14 12 2 16 16 C 1.52998 * 109.46852 * 287.11392 * 14 12 2 17 17 C 1.52993 * 109.47306 * 300.00006 * 16 14 12 18 18 C 1.53002 * 109.47184 * 299.99891 * 17 16 14 19 19 C 1.53004 * 109.46683 * 60.00074 * 18 17 16 20 20 H 1.08994 * 109.46997 * 60.00259 * 19 18 17 21 21 C 1.50705 * 109.46854 * 179.97438 * 19 18 17 22 22 O 1.21284 * 119.99886 * 119.99577 * 21 19 18 23 23 N 1.34771 * 120.00393 * 300.00591 * 21 19 18 24 24 C 1.46499 * 119.99767 * 359.97438 * 23 21 19 25 25 C 1.46504 * 120.00155 * 180.02562 * 23 21 19 26 26 C 1.53001 * 109.47167 * 89.99612 * 25 23 21 27 27 C 1.47195 * 109.47039 * 180.02562 * 26 25 23 28 28 N 9.50047 * 166.27117 * 188.61922 * 12 1 2 29 29 C 1.52993 * 109.47250 * 299.99885 * 19 18 17 30 30 H 1.09001 * 109.46868 * 84.50570 * 1 2 3 31 31 H 1.09003 * 109.47096 * 204.49943 * 1 2 3 32 32 H 1.08990 * 109.47394 * 324.50287 * 1 2 3 33 33 H 1.09001 * 109.46979 * 330.00696 * 3 2 1 34 34 H 1.08994 * 109.47079 * 209.99547 * 3 2 1 35 35 H 0.96995 * 120.00617 * 359.72733 * 7 6 4 36 36 H 1.09006 * 109.47181 * 60.00065 * 16 14 12 37 37 H 1.09003 * 109.46880 * 179.97438 * 16 14 12 38 38 H 1.09004 * 109.47636 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.47223 * 60.00122 * 17 16 14 40 40 H 1.08994 * 109.47192 * 300.00452 * 18 17 16 41 41 H 1.09001 * 109.47117 * 179.97438 * 18 17 16 42 42 H 1.09004 * 109.46977 * 90.00490 * 24 23 21 43 43 H 1.09004 * 109.47154 * 210.00506 * 24 23 21 44 44 H 1.09003 * 109.47450 * 330.00971 * 24 23 21 45 45 H 1.08999 * 109.46826 * 209.99444 * 25 23 21 46 46 H 1.08996 * 109.46821 * 329.99407 * 25 23 21 47 47 H 1.09001 * 109.46712 * 300.00007 * 26 25 23 48 48 H 1.08997 * 109.47034 * 59.99784 * 26 25 23 49 49 H 1.09003 * 109.47223 * 300.00190 * 29 19 18 50 50 H 1.08993 * 109.47295 * 180.02562 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7037 1.4209 5 1 2.0980 1.0956 2.2417 6 6 3.1268 2.8774 1.6729 7 7 3.5497 3.6200 0.6733 8 14 3.4386 3.4162 3.4341 9 1 2.8616 2.4157 4.3675 10 1 4.9013 3.5240 3.6672 11 1 2.8016 4.7371 3.6679 12 6 2.1389 -1.1672 -0.0005 13 8 3.3495 -1.1685 0.0732 14 6 1.3882 -2.4707 -0.0927 15 1 0.6481 -2.4081 -0.8904 16 6 0.6832 -2.7483 1.2365 17 6 1.7221 -2.8361 2.3562 18 6 2.7039 -3.9698 2.0532 19 6 3.4089 -3.6921 0.7240 20 1 3.9519 -2.7494 0.7907 21 6 4.3765 -4.8084 0.4258 22 8 4.2477 -5.4692 -0.5830 23 7 5.3847 -5.0726 1.2802 24 6 5.5404 -4.2743 2.4986 25 6 6.3255 -6.1575 0.9900 26 6 7.4997 -5.6102 0.1759 27 6 8.4447 -6.7003 -0.1161 28 7 9.1723 -7.5449 -0.3413 29 6 2.3701 -3.6043 -0.3957 30 1 -0.3633 0.0984 -1.0230 31 1 -0.3633 -0.9352 0.4262 32 1 -0.3633 0.8366 0.5967 33 1 1.6083 2.0284 -0.5137 34 1 3.1499 1.1384 -0.5137 35 1 3.3881 3.3402 -0.2412 36 1 -0.0163 -1.9406 1.4524 37 1 0.1399 -3.6908 1.1697 38 1 1.2200 -3.0343 3.3032 39 1 2.2651 -1.8933 2.4229 40 1 2.1610 -4.9125 1.9865 41 1 3.4443 -4.0321 2.8507 42 1 4.9757 -4.7346 3.3094 43 1 6.5950 -4.2285 2.7707 44 1 5.1665 -3.2656 2.3225 45 1 6.6961 -6.5769 1.9254 46 1 5.8185 -6.9351 0.4189 47 1 7.1290 -5.1908 -0.7594 48 1 8.0067 -4.8326 0.7471 49 1 1.8271 -4.5471 -0.4624 50 1 2.8723 -3.4070 -1.3427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299530783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:38 Heat of formation + Delta-G solvation = -68.014797 kcal Electronic energy + Delta-G solvation = -30434.514001 eV Core-core repulsion = 26460.944019 eV Total energy + Delta-G solvation = -3973.569982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.96997 -40.69597 -38.21057 -37.75692 -36.71111 -36.64730 -34.97198 -33.37163 -31.82781 -31.57869 -29.23908 -27.79078 -27.37336 -26.03116 -25.40824 -23.72883 -23.42480 -21.76054 -20.15744 -19.77680 -18.94838 -18.72825 -18.01638 -17.61050 -17.03850 -16.84475 -16.36258 -16.32003 -16.07315 -15.82573 -15.61066 -15.03235 -14.84508 -14.77894 -14.36926 -14.20497 -14.06622 -13.86022 -13.73466 -13.61733 -13.57448 -13.49470 -13.27186 -13.18749 -13.04293 -12.89710 -12.81511 -12.73396 -12.62823 -12.42683 -11.97139 -11.93047 -11.91289 -11.72848 -11.41886 -11.09027 -10.99184 -10.58289 -10.57012 -10.09768 -9.70708 -9.37282 -8.62643 -6.38742 1.51465 1.53158 1.62929 1.71976 1.73143 1.78367 1.87355 2.04909 2.35854 2.58424 3.06256 3.15769 3.48071 3.65698 3.77505 3.88271 4.01411 4.06753 4.19581 4.26217 4.28976 4.35489 4.39965 4.46072 4.48500 4.59764 4.63252 4.68905 4.70214 4.74211 4.80073 4.84782 4.90627 4.95530 4.97711 5.01786 5.05221 5.08994 5.20207 5.31932 5.35887 5.37777 5.53386 5.56195 5.67577 5.88071 6.21724 6.33771 6.49859 6.50447 6.78074 7.19065 7.37066 7.52267 8.71509 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.003280 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.397394 B = 8534.799240 C = 9649.113773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.607 5.607 3 C 0.246 3.754 4 C -0.603 4.603 5 H 0.049 0.951 6 C -0.034 4.034 7 N -0.937 5.937 8 Si 1.122 2.878 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.506 3.494 13 O -0.580 6.580 14 C -0.099 4.099 15 H 0.114 0.886 16 C -0.113 4.113 17 C -0.121 4.121 18 C -0.108 4.108 19 C -0.126 4.126 20 H 0.116 0.884 21 C 0.522 3.478 22 O -0.578 6.578 23 N -0.611 5.611 24 C 0.065 3.935 25 C 0.121 3.879 26 C -0.039 4.039 27 C 0.242 3.758 28 N -0.491 5.491 29 C -0.069 4.069 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.011 0.989 34 H -0.008 1.008 35 H 0.254 0.746 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.032 0.968 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.064 0.936 45 H 0.118 0.882 46 H 0.076 0.924 47 H 0.103 0.897 48 H 0.139 0.861 49 H 0.086 0.914 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.212 -17.542 6.716 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.337 5.337 3 C 0.124 3.876 4 C -0.641 4.641 5 H 0.067 0.933 6 C -0.232 4.232 7 N -0.575 5.575 8 Si 0.943 3.057 9 H -0.193 1.193 10 H -0.209 1.209 11 H -0.202 1.202 12 C 0.296 3.704 13 O -0.461 6.461 14 C -0.121 4.121 15 H 0.131 0.869 16 C -0.150 4.150 17 C -0.159 4.159 18 C -0.145 4.145 19 C -0.147 4.147 20 H 0.133 0.867 21 C 0.312 3.688 22 O -0.458 6.458 23 N -0.343 5.343 24 C -0.076 4.076 25 C -0.003 4.003 26 C -0.080 4.080 27 C -0.075 4.075 28 N -0.169 5.169 29 C -0.107 4.107 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.080 0.920 33 H 0.029 0.971 34 H 0.010 0.990 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.118 0.882 44 H 0.083 0.917 45 H 0.136 0.864 46 H 0.094 0.906 47 H 0.121 0.879 48 H 0.157 0.843 49 H 0.105 0.895 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.919 -17.947 6.812 19.417 hybrid contribution -0.557 -0.150 -1.673 1.770 sum -3.476 -18.097 5.138 19.130 Atomic orbital electron populations 1.22212 0.78342 1.04691 1.02365 1.48008 1.08049 1.06032 1.71660 1.18845 0.90654 0.81573 0.96555 1.22507 1.39746 1.09197 0.92698 0.93310 1.27321 0.92917 0.93763 1.09162 1.70867 1.46149 1.40466 0.99975 0.82878 0.76938 0.76199 0.69659 1.19307 1.20877 1.20177 1.21286 0.87801 0.86087 0.75261 1.90458 1.16466 1.87201 1.52005 1.21432 0.98417 0.90385 1.01822 0.86852 1.21769 0.97667 1.04125 0.91430 1.21537 0.97072 0.97933 0.99333 1.21725 0.98934 0.98915 0.94949 1.21752 0.96521 0.98523 0.97906 0.86674 1.21045 0.81562 0.84029 0.82129 1.90643 1.74989 1.52004 1.28117 1.47818 1.28043 1.34792 1.23633 1.22271 1.04640 0.95306 0.85422 1.21364 0.88244 0.89222 1.01443 1.19796 0.92162 0.91999 1.04028 1.29319 0.92946 0.93586 0.91652 1.81322 1.12454 1.12405 1.10749 1.21019 0.95400 0.97352 0.96957 0.91785 0.87310 0.92020 0.97138 0.99044 0.93644 0.90087 0.87595 0.89249 0.94936 0.90420 0.89146 0.89858 0.88208 0.91694 0.86393 0.90551 0.87883 0.84309 0.89509 0.94019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.86 9.97 127.77 1.27 3.14 16 2 N -0.61 -24.32 2.86 -851.13 -2.43 -26.75 16 3 C 0.25 12.73 4.47 85.63 0.38 13.11 16 4 C -0.60 -33.42 9.39 25.60 0.24 -33.18 16 5 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 6 C -0.03 -1.92 5.46 84.66 0.46 -1.46 16 7 N -0.94 -57.14 13.65 21.45 0.29 -56.85 16 8 Si 1.12 49.19 29.90 68.60 2.05 51.24 16 9 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 12 C 0.51 19.18 5.56 87.66 0.49 19.66 16 13 O -0.58 -26.80 12.90 -3.05 -0.04 -26.84 16 14 C -0.10 -2.55 2.18 -11.54 -0.03 -2.57 16 15 H 0.11 2.39 7.70 -2.39 -0.02 2.37 16 16 C -0.11 -2.21 5.12 30.59 0.16 -2.05 16 17 C -0.12 -2.64 5.70 30.59 0.17 -2.46 16 18 C -0.11 -2.09 4.84 30.60 0.15 -1.94 16 19 C -0.13 -3.30 1.43 -11.54 -0.02 -3.32 16 20 H 0.12 3.88 4.34 -2.39 -0.01 3.87 16 21 C 0.52 13.21 7.08 87.66 0.62 13.83 16 22 O -0.58 -18.19 15.56 -3.04 -0.05 -18.24 16 23 N -0.61 -10.61 2.87 -846.74 -2.43 -13.05 16 24 C 0.07 0.82 8.80 127.77 1.12 1.95 16 25 C 0.12 1.64 5.36 86.38 0.46 2.10 16 26 C -0.04 -0.51 6.03 28.79 0.17 -0.34 16 27 C 0.24 4.50 15.44 89.43 1.38 5.88 16 28 N -0.49 -12.37 18.55 20.02 0.37 -12.00 16 29 C -0.07 -1.85 3.77 30.59 0.12 -1.74 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.11 2.27 3.95 -2.39 -0.01 2.26 16 32 H 0.06 1.87 8.11 -2.39 -0.02 1.85 16 33 H 0.01 0.56 7.93 -2.39 -0.02 0.54 16 34 H -0.01 -0.50 7.35 -2.39 -0.02 -0.52 16 35 H 0.25 15.76 7.22 -92.71 -0.67 15.09 16 36 H 0.08 1.53 5.38 -2.38 -0.01 1.52 16 37 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.03 1.00 7.21 -2.39 -0.02 0.98 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.09 1.44 4.53 -2.39 -0.01 1.43 16 42 H 0.08 0.73 6.95 -2.39 -0.02 0.71 16 43 H 0.10 0.73 8.07 -2.39 -0.02 0.71 16 44 H 0.06 1.16 6.01 -2.39 -0.01 1.15 16 45 H 0.12 0.87 8.07 -2.39 -0.02 0.85 16 46 H 0.08 1.33 7.42 -2.39 -0.02 1.31 16 47 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.14 1.14 8.14 -2.39 -0.02 1.13 16 49 H 0.09 2.01 8.10 -2.39 -0.02 1.99 16 50 H 0.04 1.34 8.10 -2.39 -0.02 1.32 16 Total: -1.00 -81.60 391.33 5.98 -75.63 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 1.05 Total: 16.24 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 7.16 Total: 10.61 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -4.20 Total: -108.64 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -0.09 Total: -45.08 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 2.05 Total: 51.24 kcal Total: -81.60 5.98 -75.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299530783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.612 kcal (2) G-P(sol) polarization free energy of solvation -81.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds