Wall clock time and date at job start Tue Mar 31 2020 18:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46491 * 120.00137 * 2 1 4 4 C 1.50702 * 109.47510 * 270.00227 * 3 2 1 5 5 H 1.08000 * 119.99421 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00112 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00371 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99855 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46824 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.46986 * 119.99800 * 8 6 4 11 11 H 1.48498 * 109.47206 * 240.00395 * 8 6 4 12 12 C 1.34781 * 119.99783 * 179.97438 * 2 1 3 13 13 O 1.21274 * 119.99741 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99909 * 0.02562 * 12 2 1 15 15 C 1.53005 * 109.47005 * 179.97438 * 14 12 2 16 16 N 1.46893 * 109.46891 * 185.09715 * 15 14 12 17 17 C 1.46902 * 110.99766 * 160.28690 * 16 15 14 18 18 C 1.53005 * 109.47282 * 288.03858 * 17 16 15 19 19 C 1.53001 * 109.46917 * 179.22683 * 18 17 16 20 20 O 1.42903 * 109.46682 * 179.97438 * 19 18 17 21 21 C 1.46894 * 111.00289 * 284.23969 * 16 15 14 22 22 C 1.50701 * 109.47522 * 170.00390 * 21 16 15 23 23 C 1.38227 * 119.61864 * 95.01985 * 22 21 16 24 24 C 1.38629 * 119.15627 * 179.97438 * 23 22 21 25 25 C 1.38664 * 118.42609 * 359.97438 * 24 23 22 26 26 C 1.38187 * 119.16407 * 0.02562 * 25 24 23 27 27 N 1.31858 * 119.61722 * 275.00490 * 22 21 16 28 28 H 1.09001 * 109.47030 * 269.99768 * 1 2 3 29 29 H 1.09000 * 109.47003 * 29.99639 * 1 2 3 30 30 H 1.09000 * 109.47522 * 149.99682 * 1 2 3 31 31 H 1.09003 * 109.46974 * 30.00035 * 3 2 1 32 32 H 1.09001 * 109.47155 * 149.99808 * 3 2 1 33 33 H 0.97000 * 120.00306 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47266 * 60.00173 * 14 12 2 35 35 H 1.09003 * 109.47105 * 299.99982 * 14 12 2 36 36 H 1.09002 * 109.46972 * 65.09906 * 15 14 12 37 37 H 1.09000 * 109.47163 * 305.09916 * 15 14 12 38 38 H 1.09004 * 109.46972 * 48.04025 * 17 16 15 39 39 H 1.09003 * 109.47384 * 168.03384 * 17 16 15 40 40 H 1.09000 * 109.46813 * 299.22765 * 18 17 16 41 41 H 1.08999 * 109.46767 * 59.22532 * 18 17 16 42 42 H 1.09000 * 109.47446 * 299.99694 * 19 18 17 43 43 H 1.08997 * 109.47322 * 59.99816 * 19 18 17 44 44 H 0.96706 * 113.99975 * 179.97438 * 20 19 18 45 45 H 1.08998 * 109.47026 * 49.99991 * 21 16 15 46 46 H 1.09002 * 109.47427 * 290.00262 * 21 16 15 47 47 H 1.07992 * 120.41927 * 359.96023 * 23 22 21 48 48 H 1.08005 * 120.78499 * 180.02562 * 24 23 22 49 49 H 1.08001 * 120.41957 * 179.97438 * 25 24 23 50 50 H 1.07999 * 119.62054 * 180.27629 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8774 -1.6727 7 7 3.5543 3.6175 -0.6731 8 14 3.4389 3.4164 -3.4339 9 1 2.8606 2.4165 -4.3672 10 1 2.8018 4.7372 -3.6675 11 1 4.9015 3.5240 -3.6669 12 6 2.1389 -1.1673 0.0005 13 8 3.3516 -1.1673 0.0001 14 6 1.3853 -2.4724 0.0005 15 6 2.3795 -3.6353 0.0005 16 7 1.6491 -4.9039 -0.1225 17 6 2.5354 -5.9785 -0.5892 18 6 2.8715 -5.7575 -2.0654 19 6 3.8100 -6.8661 -2.5462 20 8 4.1233 -6.6600 -3.9252 21 6 1.0058 -5.2663 1.1473 22 6 0.0731 -6.4288 0.9242 23 6 0.5175 -7.7162 1.1601 24 6 -0.3487 -8.7784 0.9523 25 6 -1.6353 -8.5049 0.5136 26 6 -2.0087 -7.1918 0.2991 27 7 -1.1576 -6.2060 0.5066 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6084 2.0283 0.5139 32 1 3.1499 1.1383 0.5139 33 1 4.0318 4.4430 -0.8503 34 1 0.7590 -2.5303 -0.8897 35 1 0.7583 -2.5299 0.8903 36 1 2.9445 -3.6303 0.9327 37 1 3.0647 -3.5276 -0.8403 38 1 3.4541 -5.9722 -0.0025 39 1 2.0350 -6.9395 -0.4703 40 1 1.9541 -5.7774 -2.6537 41 1 3.3596 -4.7904 -2.1860 42 1 4.7273 -6.8461 -1.9579 43 1 3.3219 -7.8331 -2.4255 44 1 4.7162 -7.3270 -4.2977 45 1 0.4405 -4.4141 1.5245 46 1 1.7683 -5.5466 1.8740 47 1 1.5267 -7.8923 1.5017 48 1 -0.0292 -9.7950 1.1287 49 1 -2.3365 -9.3079 0.3409 50 1 -3.0104 -6.9700 -0.0383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347101600.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:12 Heat of formation + Delta-G solvation = -46.134130 kcal Electronic energy + Delta-G solvation = -28870.033207 eV Core-core repulsion = 24897.412042 eV Total energy + Delta-G solvation = -3972.621166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.57394 -39.09051 -37.99178 -36.87762 -34.72924 -33.01365 -32.69461 -32.48264 -32.19661 -30.04894 -27.72024 -26.87572 -25.78288 -24.77433 -23.76531 -23.19704 -22.07787 -21.73305 -20.50334 -18.28863 -17.56756 -17.18711 -16.61304 -16.51252 -16.31744 -16.16362 -15.83186 -15.33813 -15.26953 -14.88410 -14.63727 -14.31920 -13.97489 -13.76766 -13.66570 -13.41127 -13.19693 -13.12771 -12.62836 -12.33100 -12.11668 -12.06073 -11.88430 -11.76129 -11.71639 -11.43345 -11.26212 -11.13828 -11.02320 -10.79930 -10.63059 -10.51383 -10.16475 -10.10188 -10.09203 -9.63424 -9.54385 -9.30869 -8.81703 -8.43345 -8.38705 -7.55724 -5.99196 -4.03444 0.79178 1.00424 3.32245 3.34011 3.41183 3.45654 3.54712 3.74635 3.97529 4.07003 4.30696 4.46952 4.52559 4.55154 4.73101 4.75899 4.83170 4.99410 5.01948 5.09074 5.17623 5.20589 5.27521 5.31273 5.32576 5.36057 5.41047 5.49224 5.56388 5.58234 5.74945 5.80532 5.85545 5.86895 5.97890 6.02344 6.14315 6.18502 6.23158 6.32960 6.39829 6.93364 6.95800 7.12992 7.42593 7.50445 7.62278 7.79747 7.97921 8.29752 8.50852 8.96879 9.18236 9.61709 11.08902 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011996 B = 0.002619 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.607185 B =10686.590562 C =12158.480381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.505 3.495 13 O -0.548 6.548 14 C -0.132 4.132 15 C 0.071 3.929 16 N -0.529 5.529 17 C 0.055 3.945 18 C -0.119 4.119 19 C 0.079 3.921 20 O -0.572 6.572 21 C 0.100 3.900 22 C 0.144 3.856 23 C -0.171 4.171 24 C -0.076 4.076 25 C -0.179 4.179 26 C 0.102 3.898 27 N -0.463 5.463 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.044 0.956 43 H 0.041 0.959 44 H 0.378 0.622 45 H 0.098 0.902 46 H 0.052 0.948 47 H 0.131 0.869 48 H 0.132 0.868 49 H 0.133 0.867 50 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.465 -28.227 3.846 29.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.562 4.562 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.291 3.709 13 O -0.426 6.426 14 C -0.173 4.173 15 C -0.056 4.056 16 N -0.253 5.253 17 C -0.073 4.073 18 C -0.157 4.157 19 C 0.001 3.999 20 O -0.377 6.377 21 C -0.028 4.028 22 C 0.005 3.995 23 C -0.192 4.192 24 C -0.102 4.102 25 C -0.199 4.199 26 C -0.055 4.055 27 N -0.172 5.172 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.057 0.943 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.224 0.776 45 H 0.116 0.884 46 H 0.070 0.930 47 H 0.149 0.851 48 H 0.150 0.850 49 H 0.150 0.850 50 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.761 -26.567 3.490 28.191 hybrid contribution 1.259 -1.157 -0.287 1.734 sum -7.502 -27.724 3.204 28.899 Atomic orbital electron populations 1.21639 0.81387 1.02696 1.00333 1.48149 1.06215 1.07854 1.71297 1.19278 0.92531 0.78242 0.97466 1.21488 1.36153 1.06138 0.92382 0.92402 1.24942 0.95432 0.96431 0.97412 1.69944 1.38593 1.14382 1.30640 0.86448 0.78045 0.78288 0.84695 1.19742 1.21003 1.20908 1.20328 0.88040 0.85216 0.77317 1.90654 1.14025 1.87420 1.50520 1.21605 0.99140 0.92366 1.04177 1.21897 0.94756 0.86568 1.02414 1.61801 1.32508 1.03076 1.27950 1.22042 0.95098 0.94928 0.95207 1.21495 0.99949 0.99149 0.95092 1.22103 0.97759 0.97797 0.82280 1.86527 1.70614 1.55209 1.25327 1.21025 0.94881 0.95941 0.90977 1.21126 0.91541 0.93343 0.93487 1.22006 1.00990 0.93430 1.02751 1.21546 0.93470 0.99431 0.95794 1.22150 0.97323 0.98577 1.01853 1.22824 0.99015 0.88463 0.95247 1.67524 1.02973 1.36425 1.10247 0.93870 0.90917 0.92152 0.95094 0.93912 0.92841 0.88512 0.89878 0.93695 0.89245 0.94328 0.90748 0.90469 0.90460 0.93759 0.94026 0.77600 0.88424 0.93002 0.85091 0.85009 0.84955 0.82740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.39 10.24 59.85 0.61 2.00 16 2 N -0.60 -13.24 2.86 -182.96 -0.52 -13.76 16 3 C 0.24 6.58 5.16 -5.20 -0.03 6.56 16 4 C -0.52 -15.26 9.39 -34.44 -0.32 -15.58 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 8 Si 0.90 22.44 29.54 -169.99 -5.02 17.42 16 9 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 12 C 0.50 10.72 7.67 -10.98 -0.08 10.63 16 13 O -0.55 -13.93 15.50 5.56 0.09 -13.85 16 14 C -0.13 -2.04 4.29 -27.88 -0.12 -2.16 16 15 C 0.07 1.02 4.18 -3.83 -0.02 1.00 16 16 N -0.53 -6.29 4.38 -236.07 -1.03 -7.33 16 17 C 0.06 0.57 4.81 -3.82 -0.02 0.55 16 18 C -0.12 -1.38 5.66 -26.73 -0.15 -1.53 16 19 C 0.08 0.75 7.05 37.16 0.26 1.01 16 20 O -0.57 -6.20 13.66 -35.23 -0.48 -6.68 16 21 C 0.10 1.04 5.11 -4.98 -0.03 1.02 16 22 C 0.14 1.47 5.70 -82.58 -0.47 1.00 16 23 C -0.17 -1.37 8.03 -39.44 -0.32 -1.69 16 24 C -0.08 -0.52 10.17 -39.28 -0.40 -0.92 16 25 C -0.18 -1.23 10.11 -39.44 -0.40 -1.63 16 26 C 0.10 0.89 11.18 -17.55 -0.20 0.69 16 27 N -0.46 -5.24 10.27 -9.47 -0.10 -5.34 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 30 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 34 H 0.10 1.46 7.40 -51.93 -0.38 1.08 16 35 H 0.08 1.11 6.92 -51.93 -0.36 0.75 16 36 H 0.04 0.65 8.00 -51.93 -0.42 0.23 16 37 H 0.09 1.45 6.04 -51.93 -0.31 1.13 16 38 H 0.04 0.37 8.05 -51.93 -0.42 -0.04 16 39 H 0.07 0.68 5.55 -51.93 -0.29 0.40 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 1.06 6.51 -51.93 -0.34 0.72 16 42 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.38 2.18 9.12 45.56 0.42 2.60 16 45 H 0.10 1.07 6.72 -51.93 -0.35 0.72 16 46 H 0.05 0.47 8.02 -51.93 -0.42 0.05 16 47 H 0.13 0.80 8.00 -52.49 -0.42 0.38 16 48 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 49 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 50 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 408.23 15.07 6.15 6.15 Total: -1.00 -36.88 408.23 -9.30 -46.19 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.35 Total: 1.08 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -1.77 Total: 2.60 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.92 Total: -52.90 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.40 Total: -20.53 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.88 -9.30 -46.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347101600.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.051 kcal (2) G-P(sol) polarization free energy of solvation -36.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds