Wall clock time and date at job start Tue Mar 31 2020 18:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35916 * 116.99677 * 2 1 4 4 C 1.39138 * 120.46819 * 179.97438 * 3 2 1 5 5 C 1.38545 * 118.36706 * 180.02562 * 4 3 2 6 6 C 1.38245 * 119.22400 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.55699 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47465 * 124.99668 * 7 6 5 9 9 O 1.21283 * 119.99478 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00430 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99969 * 0.02562 * 10 8 7 12 12 C 1.50703 * 109.46877 * 269.72057 * 11 10 8 13 13 H 1.08005 * 119.99817 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00081 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00254 * 180.02562 * 14 12 11 16 16 Si 1.86811 * 119.99850 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46778 * 89.99559 * 16 14 12 18 18 H 1.48493 * 109.46886 * 209.99446 * 16 14 12 19 19 H 1.48492 * 109.47026 * 329.99859 * 16 14 12 20 20 C 1.46499 * 120.00036 * 179.72648 * 10 8 7 21 21 C 1.53001 * 109.47147 * 270.27655 * 20 10 8 22 22 C 1.53005 * 109.47315 * 179.97438 * 21 20 10 23 23 N 1.46891 * 109.47190 * 180.02562 * 22 21 20 24 24 C 1.46893 * 111.00283 * 66.04527 * 23 22 21 25 25 C 1.46903 * 110.99833 * 190.00423 * 23 22 21 26 26 N 1.31845 * 120.89115 * 0.25572 * 6 5 4 27 27 C 1.31846 * 121.77653 * 359.47392 * 26 6 5 28 28 H 1.09001 * 109.47651 * 299.99775 * 1 2 3 29 29 H 1.09000 * 109.47585 * 60.00030 * 1 2 3 30 30 H 1.09002 * 109.47263 * 180.02562 * 1 2 3 31 31 H 1.07992 * 120.82116 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.38533 * 180.02562 * 5 4 3 33 33 H 1.09009 * 109.47290 * 5.00039 * 7 6 5 34 34 H 1.09001 * 109.47203 * 244.99814 * 7 6 5 35 35 H 1.09000 * 109.46803 * 29.71536 * 11 10 8 36 36 H 1.09000 * 109.47214 * 149.72329 * 11 10 8 37 37 H 0.97008 * 120.00053 * 180.02562 * 15 14 12 38 38 H 1.08994 * 109.47173 * 30.28203 * 20 10 8 39 39 H 1.09005 * 109.47077 * 150.28374 * 20 10 8 40 40 H 1.09003 * 109.47272 * 300.00321 * 21 20 10 41 41 H 1.08997 * 109.47273 * 60.00010 * 21 20 10 42 42 H 1.08996 * 109.46592 * 300.00455 * 22 21 20 43 43 H 1.09003 * 109.46552 * 60.00048 * 22 21 20 44 44 H 1.09005 * 109.47107 * 59.99746 * 24 23 22 45 45 H 1.09001 * 109.47648 * 179.97438 * 24 23 22 46 46 H 1.08997 * 109.47137 * 300.00049 * 24 23 22 47 47 H 1.08994 * 109.47257 * 60.00002 * 25 23 22 48 48 H 1.09003 * 109.46853 * 180.02562 * 25 23 22 49 49 H 1.09002 * 109.46560 * 299.99358 * 25 23 22 50 50 H 1.07998 * 119.66294 * 180.26980 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2111 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0180 2.5520 0.0011 6 6 3.2077 3.6721 0.0016 7 6 3.8342 5.0427 0.0027 8 6 3.3023 5.8392 -1.1608 9 8 2.4937 5.3429 -1.9163 10 7 3.7243 7.1034 -1.3612 11 6 4.7006 7.7032 -0.4483 12 6 3.9763 8.3974 0.6762 13 1 2.8967 8.3920 0.7079 14 6 4.6918 9.0385 1.6651 15 7 4.0598 9.6439 2.6467 16 14 6.5591 9.0473 1.6106 17 1 7.0264 10.2331 0.8486 18 1 7.0943 9.1058 2.9945 19 1 7.0406 7.8101 0.9454 20 6 3.2117 7.8755 -2.4958 21 6 4.1087 7.6483 -3.7142 22 6 3.5730 8.4543 -4.8994 23 7 4.4339 8.2356 -6.0694 24 6 4.3537 6.8428 -6.5291 25 6 4.0961 9.1681 -7.1531 26 7 1.8943 3.5575 0.0066 27 6 1.3001 2.3805 0.0011 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 4.0432 0.4031 0.0014 32 1 5.0931 2.6553 0.0011 33 1 4.9164 4.9477 -0.0866 34 1 3.5899 5.5531 0.9344 35 1 5.3430 6.9231 -0.0398 36 1 5.3083 8.4274 -0.9908 37 1 4.5632 10.0954 3.3423 38 1 2.1967 7.5522 -2.7264 39 1 3.2064 8.9354 -2.2412 40 1 5.1238 7.9717 -3.4835 41 1 4.1142 6.5885 -3.9689 42 1 2.5581 8.1304 -5.1298 43 1 3.5673 9.5142 -4.6450 44 1 3.3249 6.6095 -6.8037 45 1 5.0002 6.7086 -7.3964 46 1 4.6760 6.1769 -5.7287 47 1 4.2313 10.1925 -6.8063 48 1 4.7482 8.9842 -8.0070 49 1 3.0581 9.0190 -7.4503 50 1 0.2214 2.3264 0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354669609.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:39 Heat of formation + Delta-G solvation = -28.660160 kcal Electronic energy + Delta-G solvation = -29094.259206 eV Core-core repulsion = 25122.395769 eV Total energy + Delta-G solvation = -3971.863437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.61861 -39.21901 -38.06920 -37.52547 -35.17533 -32.96294 -32.29642 -32.20233 -31.36599 -28.23274 -27.96088 -27.62700 -27.23496 -25.57376 -23.37621 -22.75741 -22.55555 -21.66033 -20.64510 -18.39775 -18.09607 -17.11664 -16.96020 -16.33788 -16.05209 -15.90472 -15.52108 -15.39064 -15.01498 -14.63928 -14.53704 -14.20028 -14.09740 -13.99172 -13.75997 -13.34185 -12.89412 -12.75744 -12.49683 -12.32641 -12.28795 -12.09554 -11.99166 -11.90678 -11.78630 -11.73398 -11.46557 -11.37182 -11.28504 -11.13763 -10.84385 -10.62949 -10.29249 -10.13707 -9.61724 -9.60075 -9.22053 -9.00403 -8.70160 -8.38347 -8.22362 -7.70008 -6.19427 -4.21254 1.23593 1.42956 3.10385 3.19276 3.26320 3.28417 3.43036 3.69494 3.94897 4.13898 4.28047 4.51996 4.69975 4.82792 4.92306 4.98160 5.04855 5.10846 5.11349 5.13333 5.25844 5.27689 5.34674 5.42247 5.45774 5.55289 5.61068 5.62394 5.67029 5.76179 5.76717 5.78408 5.89477 5.97925 6.00059 6.16549 6.18694 6.29489 6.43494 6.48866 6.58059 6.61723 6.71766 7.00501 7.02992 7.17288 7.39635 7.46680 8.16413 8.24656 8.44575 8.86894 9.01586 9.39936 10.93214 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.006699 B = 0.003904 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4179.026446 B = 7171.290893 C =10458.999475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.060 3.940 4 C -0.109 4.109 5 C -0.131 4.131 6 C 0.123 3.877 7 C -0.090 4.090 8 C 0.528 3.472 9 O -0.554 6.554 10 N -0.592 5.592 11 C 0.208 3.792 12 C -0.541 4.541 13 H 0.079 0.921 14 C 0.076 3.924 15 N -0.891 5.891 16 Si 0.871 3.129 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.263 1.263 20 C 0.124 3.876 21 C -0.129 4.129 22 C 0.058 3.942 23 N -0.548 5.548 24 C 0.022 3.978 25 C 0.025 3.975 26 N -0.417 5.417 27 C 0.027 3.973 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.102 0.898 34 H 0.126 0.874 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.266 0.734 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.034 0.966 43 H 0.076 0.924 44 H 0.024 0.976 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.023 0.977 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 -12.548 -10.701 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.013 3.987 4 C -0.135 4.135 5 C -0.151 4.151 6 C -0.016 4.016 7 C -0.130 4.130 8 C 0.316 3.684 9 O -0.433 6.433 10 N -0.322 5.322 11 C 0.087 3.913 12 C -0.580 4.580 13 H 0.097 0.903 14 C -0.127 4.127 15 N -0.528 5.528 16 Si 0.697 3.303 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.188 1.188 20 C 0.000 4.000 21 C -0.168 4.168 22 C -0.070 4.070 23 N -0.272 5.272 24 C -0.126 4.126 25 C -0.123 4.123 26 N -0.126 5.126 27 C -0.132 4.132 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.120 0.880 34 H 0.143 0.857 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.095 0.905 44 H 0.042 0.958 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.041 0.959 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.958 -12.037 -10.766 16.177 hybrid contribution 0.429 -0.546 -0.041 0.696 sum -0.530 -12.583 -10.807 16.596 Atomic orbital electron populations 1.23075 0.78302 1.03938 1.01702 1.86029 1.21433 1.26384 1.89035 1.20064 0.93293 0.85592 0.99702 1.20795 0.91563 0.98540 1.02650 1.21821 1.01314 0.91652 1.00298 1.20709 0.89057 0.94802 0.97039 1.20608 1.00377 0.90900 1.01074 1.20023 0.81257 0.81813 0.85349 1.90620 1.34325 1.70490 1.47902 1.47829 1.44265 1.12563 1.27585 1.19818 0.88190 0.94127 0.89193 1.21413 0.95805 1.34173 1.06567 0.90298 1.24883 0.98271 0.94564 0.94998 1.69898 1.35910 1.34619 1.12392 0.86936 0.86159 0.79333 0.77845 1.19919 1.20949 1.18784 1.21191 0.97315 0.96519 0.85009 1.21961 1.00633 1.00250 0.93957 1.22085 0.93897 1.00816 0.90222 1.61976 1.54279 1.04393 1.06579 1.22421 0.99641 0.89668 1.00864 1.22369 0.98716 0.97043 0.94221 1.67366 1.11693 1.25879 1.07662 1.22880 1.00348 0.87059 1.02961 0.92441 0.92444 0.88212 0.84312 0.84108 0.87971 0.85659 0.94871 0.95183 0.92395 0.90967 0.90266 0.91084 0.91891 0.94738 0.90536 0.95765 0.91789 0.90911 0.91319 0.91643 0.95864 0.82941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.82 101.05 0.99 1.20 16 2 O -0.32 -3.79 10.51 -19.48 -0.20 -4.00 16 3 C 0.06 0.83 6.71 -39.07 -0.26 0.57 16 4 C -0.11 -1.42 10.13 -39.13 -0.40 -1.82 16 5 C -0.13 -1.82 9.70 -39.47 -0.38 -2.20 16 6 C 0.12 2.12 5.76 -82.58 -0.48 1.65 16 7 C -0.09 -1.62 4.65 -29.03 -0.13 -1.75 16 8 C 0.53 10.88 7.61 -10.99 -0.08 10.80 16 9 O -0.55 -12.57 14.92 5.55 0.08 -12.48 16 10 N -0.59 -12.01 2.46 -175.05 -0.43 -12.44 16 11 C 0.21 4.48 4.04 -5.19 -0.02 4.46 16 12 C -0.54 -14.07 9.86 -34.44 -0.34 -14.41 16 13 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 14 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.89 -25.74 13.96 55.43 0.77 -24.96 16 16 Si 0.87 19.49 27.47 -169.99 -4.67 14.82 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.26 -5.46 6.54 56.52 0.37 -5.09 16 20 C 0.12 2.23 5.40 -4.04 -0.02 2.21 16 21 C -0.13 -2.00 5.46 -26.73 -0.15 -2.15 16 22 C 0.06 0.78 4.96 -3.83 -0.02 0.76 16 23 N -0.55 -6.99 5.02 -251.27 -1.26 -8.25 16 24 C 0.02 0.26 9.32 60.06 0.56 0.82 16 25 C 0.02 0.26 9.57 60.07 0.57 0.83 16 26 N -0.42 -7.77 9.23 -9.35 -0.09 -7.85 16 27 C 0.03 0.41 10.22 -17.37 -0.18 0.23 16 28 H 0.06 0.43 7.68 -51.93 -0.40 0.03 16 29 H 0.06 0.44 7.68 -51.93 -0.40 0.04 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.14 1.53 7.95 -52.49 -0.42 1.11 16 33 H 0.10 1.55 7.13 -51.92 -0.37 1.18 16 34 H 0.13 2.45 8.03 -51.93 -0.42 2.03 16 35 H 0.03 0.68 5.49 -51.93 -0.28 0.40 16 36 H 0.03 0.63 7.50 -51.93 -0.39 0.24 16 37 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.07 1.36 7.42 -51.93 -0.39 0.97 16 39 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.06 1.04 6.55 -51.93 -0.34 0.70 16 42 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 43 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 44 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 46 H 0.07 0.91 6.47 -51.93 -0.34 0.58 16 47 H 0.07 0.67 8.12 -51.93 -0.42 0.24 16 48 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 49 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.15 1.94 6.32 -52.49 -0.33 1.61 16 LS Contribution 406.82 15.07 6.13 6.13 Total: -1.00 -32.85 406.82 -8.39 -41.24 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -8.30 Total: 4.65 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -0.43 Total: 3.15 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -1.00 Total: -53.51 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.12 Total: -16.48 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.67 Total: 14.82 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.85 -8.39 -41.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354669609.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.584 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds