Wall clock time and date at job start Tue Mar 31 2020 18:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 117.00110 * 2 1 4 4 C 1.38733 * 120.05771 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94747 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05303 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.94564 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.46653 * 20.00129 * 7 6 5 9 9 C 1.52996 * 109.47201 * 260.00422 * 7 6 5 10 10 N 1.46900 * 109.47045 * 185.38292 * 9 7 6 11 11 C 1.46905 * 110.99822 * 166.60348 * 10 9 7 12 12 C 1.46903 * 111.00309 * 290.55754 * 10 9 7 13 13 N 1.46492 * 109.47270 * 140.00299 * 7 6 5 14 14 C 1.34777 * 119.99891 * 240.48392 * 13 7 6 15 15 O 1.21582 * 120.00208 * 4.44491 * 14 13 7 16 16 N 1.34781 * 120.00179 * 184.44216 * 14 13 7 17 17 C 1.46492 * 120.00390 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47191 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.46983 * 179.97438 * 18 17 16 20 20 H 1.08008 * 120.00456 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00125 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99612 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00096 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47526 * 89.99916 * 23 21 19 25 25 H 1.48503 * 109.46913 * 209.99703 * 23 21 19 26 26 H 1.48498 * 109.47097 * 329.99926 * 23 21 19 27 27 C 1.38269 * 120.11493 * 0.27623 * 6 5 4 28 28 C 1.38150 * 120.05135 * 359.45276 * 27 6 5 29 29 H 1.09004 * 109.46909 * 300.00627 * 1 2 3 30 30 H 1.09004 * 109.46721 * 60.00133 * 1 2 3 31 31 H 1.08995 * 109.47357 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.02713 * 359.95268 * 4 3 2 33 33 H 1.07997 * 119.97329 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.47398 * 305.38481 * 9 7 6 35 35 H 1.09007 * 109.47401 * 65.38303 * 9 7 6 36 36 H 1.09006 * 109.46980 * 60.00726 * 11 10 9 37 37 H 1.09004 * 109.46782 * 179.97438 * 11 10 9 38 38 H 1.08991 * 109.47126 * 300.00170 * 11 10 9 39 39 H 1.08997 * 109.46663 * 66.18230 * 12 10 9 40 40 H 1.08996 * 109.47395 * 186.17882 * 12 10 9 41 41 H 1.09001 * 109.47274 * 306.18313 * 12 10 9 42 42 H 0.97000 * 120.00179 * 60.48450 * 13 7 6 43 43 H 0.97007 * 119.99221 * 359.97438 * 16 14 13 44 44 H 1.09008 * 109.46703 * 300.00084 * 17 16 14 45 45 H 1.08997 * 109.47562 * 59.99885 * 17 16 14 46 46 H 1.09003 * 109.46945 * 299.99188 * 18 17 16 47 47 H 1.09000 * 109.47461 * 59.99813 * 18 17 16 48 48 H 0.97001 * 119.99799 * 179.97438 * 22 21 19 49 49 H 1.08002 * 119.97358 * 179.69682 * 27 6 5 50 50 H 1.08004 * 120.02743 * 180.27378 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5169 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0185 -0.0016 8 1 5.0117 4.9037 -0.3527 9 6 3.9940 5.5869 1.4188 10 7 4.5440 6.9489 1.3982 11 6 4.2799 7.6426 2.6660 12 6 5.9817 6.9317 1.0971 13 7 3.2655 5.9338 -0.8898 14 6 3.8929 6.4747 -1.9529 15 8 5.0308 6.1415 -2.2216 16 7 3.2588 7.3851 -2.7183 17 6 3.9405 7.9726 -3.8742 18 6 3.0069 8.9687 -4.5649 19 6 3.7084 9.5735 -5.7536 20 1 4.7191 9.2769 -5.9928 21 6 3.0598 10.5049 -6.5365 22 7 1.8288 10.8650 -6.2462 23 14 3.9292 11.2541 -8.0104 24 1 3.6662 10.4254 -9.2143 25 1 3.4218 12.6312 -8.2370 26 1 5.3907 11.3013 -7.7516 27 6 1.9212 3.6048 0.0042 28 6 1.2916 2.3751 -0.0010 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 4.0209 0.3799 -0.0002 33 1 5.1346 2.5750 -0.0019 34 1 2.9753 5.6122 1.8058 35 1 4.6103 4.9559 2.0593 36 1 4.7423 7.0914 3.4849 37 1 4.6980 8.6483 2.6238 38 1 3.2040 7.7025 2.8300 39 1 6.1352 6.5769 0.0780 40 1 6.3857 7.9393 1.1957 41 1 6.4910 6.2663 1.7942 42 1 2.3367 6.1506 -0.7128 43 1 2.3507 7.6506 -2.5041 44 1 4.8405 8.4897 -3.5410 45 1 4.2132 7.1836 -4.5750 46 1 2.1068 8.4520 -4.8981 47 1 2.7346 9.7577 -3.8640 48 1 1.3726 11.5205 -6.7967 49 1 1.3343 4.5114 0.0087 50 1 0.2129 2.3202 -0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355081730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:47 Heat of formation + Delta-G solvation = -40.131373 kcal Electronic energy + Delta-G solvation = -28860.743146 eV Core-core repulsion = 24888.382280 eV Total energy + Delta-G solvation = -3972.360866 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.57498 -39.62456 -38.14361 -37.20103 -34.89768 -34.20494 -32.76969 -31.31185 -31.13558 -29.33643 -28.44665 -27.65049 -27.35693 -24.85684 -24.08845 -22.91023 -21.77772 -21.23877 -20.58859 -20.18142 -18.51594 -17.98452 -16.58986 -16.37841 -16.21862 -16.02907 -15.63692 -15.36686 -15.08416 -14.86848 -14.58788 -14.46691 -14.28201 -14.01881 -13.70068 -13.39552 -13.32224 -13.14526 -12.94553 -12.54304 -12.47434 -12.32110 -12.21141 -12.01632 -11.81762 -11.60078 -11.29829 -11.15520 -11.11460 -10.98657 -10.87313 -10.58197 -10.23635 -9.78579 -9.47705 -9.22057 -9.19485 -8.87419 -8.45691 -8.40876 -8.32069 -8.11358 -6.04321 -4.06366 1.12460 1.16489 2.98382 3.16184 3.32924 3.38879 3.43688 3.52817 3.76481 3.85826 4.44215 4.51205 4.62375 4.65829 4.77654 4.81652 4.84310 4.96456 5.00532 5.10892 5.13043 5.19649 5.22499 5.26093 5.32828 5.38614 5.43648 5.52699 5.53745 5.69423 5.72673 5.84783 6.00163 6.07105 6.12172 6.34335 6.43659 6.50083 6.51211 6.74493 6.87197 6.92784 6.97216 7.11495 7.15297 7.39492 7.65585 7.71530 7.95903 8.33359 8.59823 8.99306 9.17789 9.57977 11.07450 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.002515 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.169061 B =11131.125967 C =12867.138479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.124 3.876 4 C -0.150 4.150 5 C -0.066 4.066 6 C -0.127 4.127 7 C 0.208 3.792 8 H 0.109 0.891 9 C 0.049 3.951 10 N -0.536 5.536 11 C 0.026 3.974 12 C 0.019 3.981 13 N -0.729 5.729 14 C 0.709 3.291 15 O -0.603 6.603 16 N -0.739 5.739 17 C 0.143 3.857 18 C 0.013 3.987 19 C -0.518 4.518 20 H 0.059 0.941 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.896 3.104 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.272 1.272 27 C -0.064 4.064 28 C -0.206 4.206 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.021 0.979 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.021 0.979 42 H 0.391 0.609 43 H 0.392 0.608 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.021 0.979 47 H 0.022 0.978 48 H 0.261 0.739 49 H 0.123 0.877 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 -17.928 20.893 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.169 4.169 5 C -0.085 4.085 6 C -0.129 4.129 7 C 0.100 3.900 8 H 0.127 0.873 9 C -0.081 4.081 10 N -0.259 5.259 11 C -0.122 4.122 12 C -0.129 4.129 13 N -0.384 5.384 14 C 0.409 3.591 15 O -0.482 6.482 16 N -0.391 5.391 17 C 0.020 3.980 18 C -0.024 4.024 19 C -0.557 4.557 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.724 3.276 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 C -0.083 4.083 28 C -0.225 4.225 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.039 0.961 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.040 0.960 42 H 0.224 0.776 43 H 0.224 0.776 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.039 0.961 47 H 0.040 0.960 48 H 0.071 0.929 49 H 0.141 0.859 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.411 -17.988 20.180 27.070 hybrid contribution -0.486 0.414 0.012 0.638 sum -1.897 -17.574 20.192 26.836 Atomic orbital electron populations 1.23055 0.78372 1.03899 1.01453 1.86061 1.21414 1.27076 1.88775 1.19053 0.92402 0.84113 0.96576 1.20396 0.91345 0.98590 1.06543 1.20845 0.99988 0.90797 0.96878 1.20094 0.93877 0.95149 1.03780 1.19519 0.97447 0.84209 0.88785 0.87319 1.22544 1.00374 0.89104 0.96042 1.61849 1.15220 1.16384 1.32473 1.22381 1.01568 0.98848 0.89393 1.22509 0.86772 1.01459 1.02128 1.44779 1.14840 1.50252 1.28489 1.15918 0.84551 0.79267 0.79324 1.90834 1.17842 1.66117 1.73441 1.45465 1.18336 1.43956 1.31389 1.21524 0.96238 0.95951 0.84302 1.19315 0.94647 0.93192 0.95274 1.21070 1.00439 1.23261 1.10953 0.92264 1.24994 0.94913 0.96551 0.97887 1.69959 1.11521 1.32603 1.39354 0.86525 0.79947 0.78376 0.82777 1.20606 1.21226 1.19727 1.20703 0.93904 0.96949 0.96729 1.21205 1.00000 0.92291 1.09005 0.92669 0.92517 0.88298 0.85178 0.85147 0.90627 0.93750 0.96069 0.91330 0.91550 0.89919 0.91611 0.96008 0.77563 0.77572 0.92917 0.93036 0.96097 0.95990 0.92932 0.85901 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.14 10.50 -19.43 -0.20 -3.34 16 3 C 0.12 1.28 6.69 -39.22 -0.26 1.02 16 4 C -0.15 -1.53 9.99 -39.43 -0.39 -1.92 16 5 C -0.07 -0.68 9.66 -39.61 -0.38 -1.06 16 6 C -0.13 -1.34 4.96 -104.60 -0.52 -1.86 16 7 C 0.21 2.38 2.39 -69.09 -0.17 2.22 16 8 H 0.11 1.50 5.68 -51.93 -0.29 1.21 16 9 C 0.05 0.48 4.64 -3.83 -0.02 0.46 16 10 N -0.54 -6.00 4.71 -251.26 -1.18 -7.18 16 11 C 0.03 0.24 9.54 60.07 0.57 0.81 16 12 C 0.02 0.23 9.32 60.07 0.56 0.79 16 13 N -0.73 -9.46 4.31 -59.82 -0.26 -9.72 16 14 C 0.71 12.52 8.56 -86.91 -0.74 11.77 16 15 O -0.60 -12.77 15.13 5.29 0.08 -12.69 16 16 N -0.74 -13.45 5.56 -65.23 -0.36 -13.81 16 17 C 0.14 3.15 5.61 -4.05 -0.02 3.13 16 18 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 19 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 20 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 23 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 27 C -0.06 -0.62 9.30 -39.60 -0.37 -0.99 16 28 C -0.21 -1.94 9.04 -39.43 -0.36 -2.30 16 29 H 0.05 0.27 7.66 -51.93 -0.40 -0.12 16 30 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.15 8.03 -52.49 -0.42 0.73 16 34 H 0.08 0.66 7.99 -51.93 -0.42 0.24 16 35 H 0.04 0.40 8.00 -51.93 -0.42 -0.01 16 36 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.07 0.62 8.05 -51.93 -0.42 0.21 16 38 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 39 H 0.08 1.18 6.44 -51.93 -0.33 0.85 16 40 H 0.07 0.75 8.01 -51.93 -0.42 0.33 16 41 H 0.02 0.22 8.02 -51.93 -0.42 -0.20 16 42 H 0.39 4.18 7.69 -40.82 -0.31 3.87 16 43 H 0.39 6.24 8.49 -40.82 -0.35 5.89 16 44 H 0.05 1.22 8.14 -51.92 -0.42 0.79 16 45 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 49 H 0.12 0.99 6.97 -52.49 -0.37 0.62 16 50 H 0.13 0.94 6.30 -52.48 -0.33 0.61 16 LS Contribution 409.56 15.07 6.17 6.17 Total: -1.00 -33.79 409.56 -9.90 -43.69 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -8.21 Total: 5.93 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.66 Total: 0.03 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -1.07 Total: -56.43 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.12 Total: -16.03 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.79 -9.90 -43.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355081730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.560 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds