Wall clock time and date at job start Tue Mar 31 2020 18:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 117.00110 * 2 1 4 4 C 1.38733 * 120.05771 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94747 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05303 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.94564 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.46653 * 20.00129 * 7 6 5 9 9 C 1.52996 * 109.47201 * 260.00422 * 7 6 5 10 10 N 1.46900 * 109.47045 * 185.38292 * 9 7 6 11 11 C 1.46905 * 110.99822 * 166.60348 * 10 9 7 12 12 C 1.46903 * 111.00309 * 290.55754 * 10 9 7 13 13 N 1.46492 * 109.47270 * 140.00299 * 7 6 5 14 14 C 1.34777 * 119.99891 * 240.48392 * 13 7 6 15 15 O 1.21582 * 120.00208 * 4.44491 * 14 13 7 16 16 N 1.34781 * 120.00179 * 184.44216 * 14 13 7 17 17 C 1.46492 * 120.00390 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47191 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.46983 * 179.97438 * 18 17 16 20 20 H 1.08008 * 120.00456 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00125 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99612 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00096 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47526 * 89.99916 * 23 21 19 25 25 H 1.48503 * 109.46913 * 209.99703 * 23 21 19 26 26 H 1.48498 * 109.47097 * 329.99926 * 23 21 19 27 27 C 1.38269 * 120.11493 * 0.27623 * 6 5 4 28 28 C 1.38150 * 120.05135 * 359.45276 * 27 6 5 29 29 H 1.09004 * 109.46909 * 300.00627 * 1 2 3 30 30 H 1.09004 * 109.46721 * 60.00133 * 1 2 3 31 31 H 1.08995 * 109.47357 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.02713 * 359.95268 * 4 3 2 33 33 H 1.07997 * 119.97329 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.47398 * 305.38481 * 9 7 6 35 35 H 1.09007 * 109.47401 * 65.38303 * 9 7 6 36 36 H 1.09006 * 109.46980 * 60.00726 * 11 10 9 37 37 H 1.09004 * 109.46782 * 179.97438 * 11 10 9 38 38 H 1.08991 * 109.47126 * 300.00170 * 11 10 9 39 39 H 1.08997 * 109.46663 * 66.18230 * 12 10 9 40 40 H 1.08996 * 109.47395 * 186.17882 * 12 10 9 41 41 H 1.09001 * 109.47274 * 306.18313 * 12 10 9 42 42 H 0.97000 * 120.00179 * 60.48450 * 13 7 6 43 43 H 0.97007 * 119.99221 * 359.97438 * 16 14 13 44 44 H 1.09008 * 109.46703 * 300.00084 * 17 16 14 45 45 H 1.08997 * 109.47562 * 59.99885 * 17 16 14 46 46 H 1.09003 * 109.46945 * 299.99188 * 18 17 16 47 47 H 1.09000 * 109.47461 * 59.99813 * 18 17 16 48 48 H 0.97001 * 119.99799 * 179.97438 * 22 21 19 49 49 H 1.08002 * 119.97358 * 179.69682 * 27 6 5 50 50 H 1.08004 * 120.02743 * 180.27378 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5169 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0185 -0.0016 8 1 5.0117 4.9037 -0.3527 9 6 3.9940 5.5869 1.4188 10 7 4.5440 6.9489 1.3982 11 6 4.2799 7.6426 2.6660 12 6 5.9817 6.9317 1.0971 13 7 3.2655 5.9338 -0.8898 14 6 3.8929 6.4747 -1.9529 15 8 5.0308 6.1415 -2.2216 16 7 3.2588 7.3851 -2.7183 17 6 3.9405 7.9726 -3.8742 18 6 3.0069 8.9687 -4.5649 19 6 3.7084 9.5735 -5.7536 20 1 4.7191 9.2769 -5.9928 21 6 3.0598 10.5049 -6.5365 22 7 1.8288 10.8650 -6.2462 23 14 3.9292 11.2541 -8.0104 24 1 3.6662 10.4254 -9.2143 25 1 3.4218 12.6312 -8.2370 26 1 5.3907 11.3013 -7.7516 27 6 1.9212 3.6048 0.0042 28 6 1.2916 2.3751 -0.0010 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 4.0209 0.3799 -0.0002 33 1 5.1346 2.5750 -0.0019 34 1 2.9753 5.6122 1.8058 35 1 4.6103 4.9559 2.0593 36 1 4.7423 7.0914 3.4849 37 1 4.6980 8.6483 2.6238 38 1 3.2040 7.7025 2.8300 39 1 6.1352 6.5769 0.0780 40 1 6.3857 7.9393 1.1957 41 1 6.4910 6.2663 1.7942 42 1 2.3367 6.1506 -0.7128 43 1 2.3507 7.6506 -2.5041 44 1 4.8405 8.4897 -3.5410 45 1 4.2132 7.1836 -4.5750 46 1 2.1068 8.4520 -4.8981 47 1 2.7346 9.7577 -3.8640 48 1 1.3726 11.5205 -6.7967 49 1 1.3343 4.5114 0.0087 50 1 0.2129 2.3202 -0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355081730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:46 Heat of formation + Delta-G solvation = -63.591129 kcal Electronic energy + Delta-G solvation = -28861.760438 eV Core-core repulsion = 24888.382280 eV Total energy + Delta-G solvation = -3973.378158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.45340 -40.73291 -39.13526 -37.98424 -36.53981 -35.42633 -34.74702 -32.35497 -32.04017 -30.91532 -29.34162 -28.46538 -27.96969 -26.67056 -25.10213 -23.74324 -22.92944 -22.55026 -21.98528 -21.27325 -19.51366 -19.05786 -18.39998 -17.52591 -17.19627 -16.70883 -16.62351 -16.47250 -16.33848 -16.02937 -15.99216 -15.58954 -15.40887 -15.10261 -14.79095 -14.62699 -14.32009 -14.29989 -14.16454 -13.82686 -13.34797 -13.25177 -13.16724 -12.97007 -12.91183 -12.73195 -12.59907 -12.50215 -12.47272 -12.17544 -12.08355 -11.83731 -11.66549 -11.58496 -11.44366 -11.08188 -10.57755 -10.19939 -9.95869 -9.63400 -9.23861 -9.08663 -8.21742 -6.31611 0.36749 0.40001 1.42885 1.43560 1.55060 1.89060 2.35450 2.39102 2.43371 2.74403 3.02502 3.12967 3.49152 3.79861 3.86629 3.96003 4.12029 4.19991 4.30795 4.33581 4.40190 4.44681 4.46376 4.51652 4.53200 4.58044 4.61058 4.65055 4.72723 4.74911 4.76020 4.89084 4.92186 5.04478 5.06518 5.09705 5.25904 5.37176 5.38354 5.51513 5.59353 5.64139 5.74223 5.78526 5.83780 6.09629 6.13330 6.18315 6.21310 6.44462 6.81664 7.26592 7.37736 7.77025 8.90297 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.002515 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.169061 B =11131.125967 C =12867.138479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.114 3.886 4 C -0.162 4.162 5 C -0.074 4.074 6 C -0.138 4.138 7 C 0.212 3.788 8 H 0.083 0.917 9 C 0.056 3.944 10 N -0.555 5.555 11 C 0.028 3.972 12 C 0.026 3.974 13 N -0.710 5.710 14 C 0.709 3.291 15 O -0.639 6.639 16 N -0.735 5.735 17 C 0.165 3.835 18 C 0.026 3.974 19 C -0.545 4.545 20 H 0.058 0.942 21 C 0.007 3.993 22 N -0.927 5.927 23 Si 0.964 3.036 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.267 1.267 27 C -0.067 4.067 28 C -0.208 4.208 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.117 0.883 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.032 0.968 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.405 0.595 43 H 0.404 0.596 44 H 0.040 0.960 45 H 0.039 0.961 46 H 0.007 0.993 47 H 0.008 0.992 48 H 0.265 0.735 49 H 0.140 0.860 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.148 -18.343 21.771 28.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.069 3.931 4 C -0.181 4.181 5 C -0.093 4.093 6 C -0.140 4.140 7 C 0.106 3.894 8 H 0.101 0.899 9 C -0.073 4.073 10 N -0.279 5.279 11 C -0.120 4.120 12 C -0.123 4.123 13 N -0.364 5.364 14 C 0.409 3.591 15 O -0.522 6.522 16 N -0.389 5.389 17 C 0.041 3.959 18 C -0.012 4.012 19 C -0.583 4.583 20 H 0.076 0.924 21 C -0.192 4.192 22 N -0.567 5.567 23 Si 0.789 3.211 24 H -0.198 1.198 25 H -0.205 1.205 26 H -0.191 1.191 27 C -0.085 4.085 28 C -0.227 4.227 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.241 0.759 43 H 0.239 0.761 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.026 0.974 47 H 0.026 0.974 48 H 0.074 0.926 49 H 0.158 0.842 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.408 -18.427 21.112 28.126 hybrid contribution -0.248 0.457 -0.199 0.556 sum -2.656 -17.970 20.913 27.701 Atomic orbital electron populations 1.23330 0.76520 1.05508 1.02232 1.86042 1.23414 1.26955 1.88665 1.19261 0.92667 0.84764 0.96420 1.20573 0.91836 0.98876 1.06798 1.20980 1.00494 0.90903 0.96899 1.20025 0.94448 0.94447 1.05062 1.19536 0.95995 0.84600 0.89280 0.89879 1.22503 1.01511 0.88558 0.94734 1.61831 1.14719 1.17331 1.34042 1.22393 1.02385 0.98526 0.88660 1.22365 0.87728 1.01499 1.00685 1.44612 1.15377 1.49374 1.27030 1.15998 0.84097 0.79050 0.79977 1.90816 1.19616 1.67223 1.74516 1.45163 1.18803 1.44287 1.30684 1.20979 0.95140 0.94739 0.85090 1.19106 0.94418 0.93139 0.94522 1.21473 1.00746 1.23938 1.12185 0.92407 1.25863 0.95627 0.96888 1.00799 1.70060 1.12833 1.33140 1.40617 0.85457 0.78929 0.77667 0.79069 1.19772 1.20459 1.19103 1.20911 0.93551 0.97862 0.96171 1.21447 1.01116 0.91791 1.08309 0.91418 0.92109 0.86447 0.84420 0.84565 0.88810 0.92690 0.94918 0.91689 0.90418 0.93007 0.91797 0.94500 0.75859 0.76110 0.94183 0.94233 0.97438 0.97413 0.92576 0.84179 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.16 10.50 -92.43 -0.97 -7.13 16 3 C 0.11 2.23 6.69 22.51 0.15 2.38 16 4 C -0.16 -3.21 9.99 22.37 0.22 -2.98 16 5 C -0.07 -1.48 9.66 22.25 0.22 -1.27 16 6 C -0.14 -2.77 4.96 -19.85 -0.10 -2.87 16 7 C 0.21 4.73 2.39 44.25 0.11 4.84 16 8 H 0.08 2.35 5.68 -2.38 -0.01 2.33 16 9 C 0.06 1.00 4.64 86.30 0.40 1.40 16 10 N -0.56 -11.76 4.71 -948.83 -4.47 -16.23 16 11 C 0.03 0.46 9.54 127.69 1.22 1.67 16 12 C 0.03 0.59 9.32 127.69 1.19 1.78 16 13 N -0.71 -17.80 4.31 -461.42 -1.99 -19.79 16 14 C 0.71 25.09 8.56 179.05 1.53 26.62 16 15 O -0.64 -27.75 15.13 -3.97 -0.06 -27.81 16 16 N -0.74 -26.85 5.56 -478.54 -2.66 -29.51 16 17 C 0.17 7.43 5.61 86.38 0.48 7.91 16 18 C 0.03 1.33 5.09 29.85 0.15 1.48 16 19 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 20 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 21 C 0.01 0.39 5.46 84.66 0.46 0.85 16 22 N -0.93 -54.91 13.29 21.45 0.28 -54.62 16 23 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 C -0.07 -1.16 9.30 22.26 0.21 -0.95 16 28 C -0.21 -3.51 9.04 22.37 0.20 -3.31 16 29 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 30 H 0.06 0.56 7.66 -2.38 -0.02 0.54 16 31 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.14 2.43 8.03 -2.91 -0.02 2.40 16 34 H 0.09 1.35 7.99 -2.39 -0.02 1.34 16 35 H 0.06 0.90 8.00 -2.38 -0.02 0.88 16 36 H 0.03 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.06 1.09 8.05 -2.38 -0.02 1.07 16 38 H 0.08 1.08 8.10 -2.39 -0.02 1.06 16 39 H 0.05 1.53 6.44 -2.39 -0.02 1.52 16 40 H 0.06 1.46 8.01 -2.39 -0.02 1.44 16 41 H 0.04 0.72 8.02 -2.39 -0.02 0.70 16 42 H 0.41 7.92 7.69 -92.71 -0.71 7.20 16 43 H 0.40 12.68 8.49 -92.70 -0.79 11.89 16 44 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 45 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 49 H 0.14 1.85 6.97 -2.91 -0.02 1.83 16 50 H 0.15 1.78 6.30 -2.91 -0.02 1.76 16 Total: -1.00 -72.86 409.56 -0.60 -73.46 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: -0.56 Total: 27.36 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 7.79 Total: 8.04 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -8.83 Total: -120.15 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -1.03 Total: -34.94 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -72.86 -0.60 -73.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355081730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.867 kcal (2) G-P(sol) polarization free energy of solvation -72.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds