Wall clock time and date at job start Tue Mar 31 2020 18:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 117.00193 * 2 1 4 4 C 1.38731 * 120.05726 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.94106 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05665 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94009 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.47360 * 339.99547 * 7 6 5 9 9 C 1.53004 * 109.46903 * 99.99778 * 7 6 5 10 10 N 1.46898 * 109.47300 * 295.96410 * 9 7 6 11 11 C 1.46893 * 110.99929 * 163.78973 * 10 9 7 12 12 C 1.46901 * 110.99758 * 287.74665 * 10 9 7 13 13 N 1.46500 * 109.47020 * 219.99552 * 7 6 5 14 14 C 1.34773 * 120.00088 * 155.84729 * 13 7 6 15 15 O 1.21588 * 119.99842 * 5.03449 * 14 13 7 16 16 N 1.34772 * 120.00187 * 185.02755 * 14 13 7 17 17 C 1.46499 * 120.00345 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47425 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47200 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00129 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99961 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00083 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99949 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47305 * 89.99521 * 23 21 19 25 25 H 1.48497 * 109.47423 * 209.99580 * 23 21 19 26 26 H 1.48502 * 109.46913 * 329.99413 * 23 21 19 27 27 C 1.38265 * 120.11293 * 359.97438 * 6 5 4 28 28 C 1.38140 * 120.05674 * 359.97438 * 27 6 5 29 29 H 1.08996 * 109.47086 * 60.00595 * 1 2 3 30 30 H 1.09000 * 109.47270 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47535 * 300.00095 * 1 2 3 32 32 H 1.07999 * 120.02978 * 359.95800 * 4 3 2 33 33 H 1.08001 * 119.97052 * 179.71833 * 5 4 3 34 34 H 1.09005 * 109.47124 * 55.96713 * 9 7 6 35 35 H 1.08996 * 109.47030 * 175.96073 * 9 7 6 36 36 H 1.08998 * 109.47231 * 60.00083 * 11 10 9 37 37 H 1.09007 * 109.47181 * 179.97438 * 11 10 9 38 38 H 1.09002 * 109.47479 * 299.99875 * 11 10 9 39 39 H 1.08993 * 109.47463 * 58.24606 * 12 10 9 40 40 H 1.09002 * 109.46924 * 178.24975 * 12 10 9 41 41 H 1.09005 * 109.46775 * 298.24940 * 12 10 9 42 42 H 0.96999 * 119.99976 * 335.85458 * 13 7 6 43 43 H 0.97002 * 120.00063 * 0.02562 * 16 14 13 44 44 H 1.08996 * 109.47134 * 300.00595 * 17 16 14 45 45 H 1.09002 * 109.46865 * 59.99724 * 17 16 14 46 46 H 1.09002 * 109.47064 * 299.99818 * 18 17 16 47 47 H 1.09002 * 109.47311 * 60.00013 * 18 17 16 48 48 H 0.97001 * 119.99628 * 180.02562 * 22 21 19 49 49 H 1.08006 * 119.96761 * 180.02562 * 27 6 5 50 50 H 1.07996 * 120.02826 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0560 2.5169 0.0000 6 6 3.3019 3.6757 -0.0005 7 6 3.9861 5.0185 -0.0005 8 1 5.0113 4.9039 0.3514 9 6 3.9951 5.5863 -1.4213 10 7 4.7999 4.7178 -2.2907 11 6 4.5292 4.9950 -3.7076 12 6 6.2316 4.8546 -1.9915 13 7 3.2647 5.9342 0.8867 14 6 3.9044 6.9872 1.4328 15 8 5.0535 7.2303 1.1183 16 7 3.2705 7.7709 2.3275 17 6 3.9657 8.9159 2.9207 18 6 3.0288 9.6324 3.8952 19 6 3.7438 10.8106 4.5049 20 1 4.7645 11.0265 4.2257 21 6 3.0952 11.6124 5.4201 22 7 1.8525 11.3493 5.7605 23 14 3.9817 13.0724 6.1764 24 1 3.7587 14.2764 5.3363 25 1 3.4549 13.3178 7.5429 26 1 5.4365 12.7835 6.2513 27 6 1.9210 3.6047 -0.0011 28 6 1.2915 2.3751 -0.0016 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.0209 0.3799 0.0016 33 1 5.1345 2.5750 0.0050 34 1 2.9740 5.6339 -1.8000 35 1 4.4252 6.5877 -1.4096 36 1 4.7746 6.0339 -3.9279 37 1 5.1384 4.3385 -4.3291 38 1 3.4742 4.8184 -3.9174 39 1 6.4095 4.6060 -0.9453 40 1 6.8020 4.1780 -2.6279 41 1 6.5454 5.8814 -2.1794 42 1 2.3266 5.7825 1.0813 43 1 2.3539 7.5768 2.5787 44 1 4.8492 8.5673 3.4554 45 1 4.2668 9.6061 2.1327 46 1 2.1456 9.9811 3.3600 47 1 2.7273 8.9424 4.6832 48 1 1.3961 11.9136 6.4041 49 1 1.3342 4.5114 -0.0019 50 1 0.2129 2.3202 -0.0024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355081731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:51 Heat of formation + Delta-G solvation = -39.799909 kcal Electronic energy + Delta-G solvation = -28716.387482 eV Core-core repulsion = 24744.040989 eV Total energy + Delta-G solvation = -3972.346493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.58865 -39.70710 -38.27382 -37.08128 -35.07831 -34.37939 -32.84253 -31.26522 -31.08186 -29.41030 -28.42017 -27.72501 -27.36124 -24.95964 -24.01374 -22.91313 -22.04440 -21.18709 -20.64913 -20.14598 -18.57163 -18.07011 -16.72879 -16.28464 -16.17834 -15.99556 -15.60693 -15.55635 -15.15565 -14.86174 -14.62386 -14.51181 -14.41314 -14.00445 -13.69142 -13.41579 -13.31670 -13.19944 -13.07400 -12.69985 -12.46462 -12.28261 -12.23293 -11.96885 -11.81355 -11.77869 -11.20264 -11.18280 -11.08888 -11.03395 -10.87201 -10.62909 -10.31012 -9.95129 -9.55857 -9.26063 -9.17313 -9.08516 -8.50906 -8.47511 -8.28566 -8.21830 -6.08952 -4.11455 1.19361 1.22995 2.96162 3.02352 3.29799 3.35974 3.40528 3.52087 3.64287 3.92382 4.40350 4.53608 4.54596 4.67673 4.71530 4.79381 4.83100 4.96390 5.01766 5.11991 5.14278 5.21437 5.26229 5.28248 5.28903 5.41274 5.49995 5.53195 5.66309 5.67500 5.75537 5.83499 5.90977 6.05302 6.14791 6.29992 6.39266 6.40636 6.56225 6.60567 6.78008 6.85538 6.90143 7.00382 7.15743 7.24577 7.57363 7.63921 7.90368 8.26251 8.43181 8.93147 8.99624 9.53255 11.02740 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012768 B = 0.002279 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.385344 B =12283.090063 C =13909.061085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.122 3.878 4 C -0.149 4.149 5 C -0.049 4.049 6 C -0.104 4.104 7 C 0.216 3.784 8 H 0.094 0.906 9 C 0.047 3.953 10 N -0.539 5.539 11 C 0.027 3.973 12 C 0.021 3.979 13 N -0.748 5.748 14 C 0.700 3.300 15 O -0.597 6.597 16 N -0.738 5.738 17 C 0.141 3.859 18 C 0.013 3.987 19 C -0.520 4.520 20 H 0.059 0.941 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.272 1.272 27 C -0.076 4.076 28 C -0.205 4.205 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.024 0.976 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.028 0.972 42 H 0.394 0.606 43 H 0.393 0.607 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.022 0.978 47 H 0.022 0.978 48 H 0.262 0.738 49 H 0.121 0.879 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.215 -22.463 -16.812 28.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.077 3.923 4 C -0.168 4.168 5 C -0.067 4.067 6 C -0.105 4.105 7 C 0.109 3.891 8 H 0.112 0.888 9 C -0.082 4.082 10 N -0.263 5.263 11 C -0.121 4.121 12 C -0.127 4.127 13 N -0.405 5.405 14 C 0.400 3.600 15 O -0.475 6.475 16 N -0.391 5.391 17 C 0.018 3.982 18 C -0.025 4.025 19 C -0.559 4.559 20 H 0.078 0.922 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.724 3.276 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 C -0.095 4.095 28 C -0.224 4.224 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.228 0.772 43 H 0.226 0.774 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.040 0.960 47 H 0.040 0.960 48 H 0.071 0.929 49 H 0.139 0.861 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.321 -22.814 -16.850 28.392 hybrid contribution -0.657 1.687 0.463 1.869 sum -1.979 -21.127 -16.387 26.810 Atomic orbital electron populations 1.23037 0.78488 1.03815 1.01395 1.86057 1.21311 1.27164 1.88862 1.19029 0.92397 0.84017 0.96838 1.20376 0.91261 0.98557 1.06587 1.20688 0.99806 0.90469 0.95752 1.19622 0.93359 0.94381 1.03131 1.19390 0.96293 0.84617 0.88762 0.88822 1.22537 0.98188 0.94920 0.92602 1.61902 1.06467 1.53900 1.03996 1.22350 1.01945 0.99214 0.88623 1.22454 0.87943 1.00035 1.02261 1.45254 1.14113 1.29058 1.52094 1.16056 0.84868 0.79593 0.79529 1.90883 1.16880 1.73587 1.66176 1.45543 1.17278 1.31455 1.44841 1.21585 0.96131 0.84484 0.96019 1.19324 0.94644 0.95148 0.93352 1.21053 0.99472 1.11120 1.24240 0.92227 1.24997 0.94926 0.97925 0.96481 1.69957 1.10931 1.39061 1.33421 0.86511 0.79984 0.82615 0.78443 1.20581 1.21183 1.19713 1.20664 0.93919 0.96967 0.97942 1.21128 0.99850 0.92227 1.09174 0.92695 0.88380 0.92613 0.85322 0.85337 0.90927 0.93141 0.95719 0.91422 0.91569 0.91096 0.91545 0.95290 0.77165 0.77407 0.92761 0.92836 0.96011 0.95954 0.92871 0.86095 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.08 10.50 -19.41 -0.20 -3.28 16 3 C 0.12 1.24 6.69 -39.21 -0.26 0.97 16 4 C -0.15 -1.48 9.99 -39.43 -0.39 -1.88 16 5 C -0.05 -0.49 9.66 -39.60 -0.38 -0.87 16 6 C -0.10 -1.08 4.66 -104.60 -0.49 -1.57 16 7 C 0.22 2.55 2.21 -69.08 -0.15 2.40 16 8 H 0.09 1.28 6.00 -51.93 -0.31 0.96 16 9 C 0.05 0.54 4.64 -3.82 -0.02 0.52 16 10 N -0.54 -5.51 4.66 -251.26 -1.17 -6.68 16 11 C 0.03 0.24 9.54 60.06 0.57 0.81 16 12 C 0.02 0.21 9.40 60.07 0.56 0.78 16 13 N -0.75 -9.56 5.04 -59.81 -0.30 -9.86 16 14 C 0.70 12.06 8.51 -86.92 -0.74 11.32 16 15 O -0.60 -12.46 15.92 5.29 0.08 -12.38 16 16 N -0.74 -12.99 5.56 -65.23 -0.36 -13.35 16 17 C 0.14 3.02 5.61 -4.05 -0.02 3.00 16 18 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 19 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 20 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 23 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 27 C -0.08 -0.72 9.04 -39.61 -0.36 -1.08 16 28 C -0.21 -1.88 9.04 -39.43 -0.36 -2.24 16 29 H 0.05 0.27 7.66 -51.93 -0.40 -0.12 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 32 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.13 1.15 8.03 -52.49 -0.42 0.73 16 34 H 0.07 0.78 7.95 -51.93 -0.41 0.37 16 35 H 0.05 0.71 7.89 -51.93 -0.41 0.30 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 39 H 0.07 0.73 6.58 -51.93 -0.34 0.39 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.03 0.32 8.13 -51.93 -0.42 -0.11 16 42 H 0.39 4.07 6.88 -40.82 -0.28 3.79 16 43 H 0.39 5.96 8.49 -40.82 -0.35 5.61 16 44 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 49 H 0.12 0.96 6.92 -52.48 -0.36 0.59 16 50 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 LS Contribution 410.09 15.07 6.18 6.18 Total: -1.00 -33.09 410.09 -9.86 -42.95 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.20 Total: 5.17 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.60 Total: 0.27 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -1.10 Total: -55.32 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.12 Total: -15.66 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.09 -9.86 -42.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355081731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.149 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds