Wall clock time and date at job start Tue Mar 31 2020 18:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 117.00193 * 2 1 4 4 C 1.38731 * 120.05726 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.94106 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05665 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94009 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.47360 * 339.99547 * 7 6 5 9 9 C 1.53004 * 109.46903 * 99.99778 * 7 6 5 10 10 N 1.46898 * 109.47300 * 295.96410 * 9 7 6 11 11 C 1.46893 * 110.99929 * 163.78973 * 10 9 7 12 12 C 1.46901 * 110.99758 * 287.74665 * 10 9 7 13 13 N 1.46500 * 109.47020 * 219.99552 * 7 6 5 14 14 C 1.34773 * 120.00088 * 155.84729 * 13 7 6 15 15 O 1.21588 * 119.99842 * 5.03449 * 14 13 7 16 16 N 1.34772 * 120.00187 * 185.02755 * 14 13 7 17 17 C 1.46499 * 120.00345 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47425 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47200 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00129 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99961 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00083 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99949 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47305 * 89.99521 * 23 21 19 25 25 H 1.48497 * 109.47423 * 209.99580 * 23 21 19 26 26 H 1.48502 * 109.46913 * 329.99413 * 23 21 19 27 27 C 1.38265 * 120.11293 * 359.97438 * 6 5 4 28 28 C 1.38140 * 120.05674 * 359.97438 * 27 6 5 29 29 H 1.08996 * 109.47086 * 60.00595 * 1 2 3 30 30 H 1.09000 * 109.47270 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47535 * 300.00095 * 1 2 3 32 32 H 1.07999 * 120.02978 * 359.95800 * 4 3 2 33 33 H 1.08001 * 119.97052 * 179.71833 * 5 4 3 34 34 H 1.09005 * 109.47124 * 55.96713 * 9 7 6 35 35 H 1.08996 * 109.47030 * 175.96073 * 9 7 6 36 36 H 1.08998 * 109.47231 * 60.00083 * 11 10 9 37 37 H 1.09007 * 109.47181 * 179.97438 * 11 10 9 38 38 H 1.09002 * 109.47479 * 299.99875 * 11 10 9 39 39 H 1.08993 * 109.47463 * 58.24606 * 12 10 9 40 40 H 1.09002 * 109.46924 * 178.24975 * 12 10 9 41 41 H 1.09005 * 109.46775 * 298.24940 * 12 10 9 42 42 H 0.96999 * 119.99976 * 335.85458 * 13 7 6 43 43 H 0.97002 * 120.00063 * 0.02562 * 16 14 13 44 44 H 1.08996 * 109.47134 * 300.00595 * 17 16 14 45 45 H 1.09002 * 109.46865 * 59.99724 * 17 16 14 46 46 H 1.09002 * 109.47064 * 299.99818 * 18 17 16 47 47 H 1.09002 * 109.47311 * 60.00013 * 18 17 16 48 48 H 0.97001 * 119.99628 * 180.02562 * 22 21 19 49 49 H 1.08006 * 119.96761 * 180.02562 * 27 6 5 50 50 H 1.07996 * 120.02826 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0560 2.5169 0.0000 6 6 3.3019 3.6757 -0.0005 7 6 3.9861 5.0185 -0.0005 8 1 5.0113 4.9039 0.3514 9 6 3.9951 5.5863 -1.4213 10 7 4.7999 4.7178 -2.2907 11 6 4.5292 4.9950 -3.7076 12 6 6.2316 4.8546 -1.9915 13 7 3.2647 5.9342 0.8867 14 6 3.9044 6.9872 1.4328 15 8 5.0535 7.2303 1.1183 16 7 3.2705 7.7709 2.3275 17 6 3.9657 8.9159 2.9207 18 6 3.0288 9.6324 3.8952 19 6 3.7438 10.8106 4.5049 20 1 4.7645 11.0265 4.2257 21 6 3.0952 11.6124 5.4201 22 7 1.8525 11.3493 5.7605 23 14 3.9817 13.0724 6.1764 24 1 3.7587 14.2764 5.3363 25 1 3.4549 13.3178 7.5429 26 1 5.4365 12.7835 6.2513 27 6 1.9210 3.6047 -0.0011 28 6 1.2915 2.3751 -0.0016 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.0209 0.3799 0.0016 33 1 5.1345 2.5750 0.0050 34 1 2.9740 5.6339 -1.8000 35 1 4.4252 6.5877 -1.4096 36 1 4.7746 6.0339 -3.9279 37 1 5.1384 4.3385 -4.3291 38 1 3.4742 4.8184 -3.9174 39 1 6.4095 4.6060 -0.9453 40 1 6.8020 4.1780 -2.6279 41 1 6.5454 5.8814 -2.1794 42 1 2.3266 5.7825 1.0813 43 1 2.3539 7.5768 2.5787 44 1 4.8492 8.5673 3.4554 45 1 4.2668 9.6061 2.1327 46 1 2.1456 9.9811 3.3600 47 1 2.7273 8.9424 4.6832 48 1 1.3961 11.9136 6.4041 49 1 1.3342 4.5114 -0.0019 50 1 0.2129 2.3202 -0.0024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355081731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:49 Heat of formation + Delta-G solvation = -62.791774 kcal Electronic energy + Delta-G solvation = -28717.384484 eV Core-core repulsion = 24744.040989 eV Total energy + Delta-G solvation = -3973.343495 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.52147 -40.77436 -39.23081 -37.84572 -36.65191 -35.64739 -34.80060 -32.30971 -31.98130 -30.93614 -29.33765 -28.49315 -27.95949 -26.73661 -25.07372 -23.74825 -22.90458 -22.83247 -21.98253 -21.17224 -19.67986 -18.98713 -18.43012 -17.69758 -17.01891 -16.76335 -16.57428 -16.48935 -16.40730 -16.18247 -16.01541 -15.70281 -15.35804 -15.08195 -14.87581 -14.61799 -14.34749 -14.29410 -14.11637 -13.96893 -13.40178 -13.25964 -13.20296 -12.97002 -12.81363 -12.74146 -12.58512 -12.56477 -12.51400 -12.22684 -11.90154 -11.85221 -11.67229 -11.64817 -11.49515 -11.20263 -10.59979 -10.38435 -9.88392 -9.77356 -9.34219 -9.01055 -8.23563 -6.33536 0.45544 0.47026 1.42121 1.42641 1.53939 1.71920 2.15486 2.41452 2.44083 2.84623 2.99375 3.11356 3.45708 3.66975 3.85515 4.00725 4.08143 4.19971 4.29157 4.34634 4.43795 4.46363 4.47819 4.50249 4.53548 4.56652 4.62801 4.69153 4.75830 4.77786 4.80365 4.86411 4.88759 5.00805 5.04460 5.12518 5.29471 5.32319 5.39350 5.44657 5.52621 5.60770 5.72418 5.79766 5.84454 6.01055 6.01609 6.08938 6.18086 6.50525 6.79719 7.11640 7.35693 7.59488 8.88371 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012768 B = 0.002279 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.385344 B =12283.090063 C =13909.061085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.114 3.886 4 C -0.160 4.160 5 C -0.053 4.053 6 C -0.113 4.113 7 C 0.221 3.779 8 H 0.074 0.926 9 C 0.056 3.944 10 N -0.538 5.538 11 C 0.026 3.974 12 C 0.023 3.977 13 N -0.728 5.728 14 C 0.701 3.299 15 O -0.634 6.634 16 N -0.733 5.733 17 C 0.162 3.838 18 C 0.024 3.976 19 C -0.545 4.545 20 H 0.058 0.942 21 C 0.007 3.993 22 N -0.926 5.926 23 Si 0.964 3.036 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.267 1.267 27 C -0.078 4.078 28 C -0.205 4.205 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.062 0.938 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.084 0.916 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.014 0.986 42 H 0.409 0.591 43 H 0.407 0.593 44 H 0.043 0.957 45 H 0.043 0.957 46 H 0.009 0.991 47 H 0.008 0.992 48 H 0.266 0.734 49 H 0.137 0.863 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.026 -23.327 -17.409 29.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.069 3.931 4 C -0.178 4.178 5 C -0.071 4.071 6 C -0.114 4.114 7 C 0.115 3.885 8 H 0.092 0.908 9 C -0.074 4.074 10 N -0.262 5.262 11 C -0.122 4.122 12 C -0.125 4.125 13 N -0.385 5.385 14 C 0.400 3.600 15 O -0.515 6.515 16 N -0.387 5.387 17 C 0.037 3.963 18 C -0.013 4.013 19 C -0.584 4.584 20 H 0.077 0.923 21 C -0.192 4.192 22 N -0.566 5.566 23 Si 0.789 3.211 24 H -0.198 1.198 25 H -0.205 1.205 26 H -0.191 1.191 27 C -0.096 4.096 28 C -0.224 4.224 29 H 0.083 0.917 30 H 0.134 0.866 31 H 0.081 0.919 32 H 0.155 0.845 33 H 0.151 0.849 34 H 0.102 0.898 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.032 0.968 42 H 0.246 0.754 43 H 0.242 0.758 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.074 0.926 49 H 0.155 0.845 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.179 -23.724 -17.470 29.543 hybrid contribution -0.461 1.836 0.603 1.987 sum -2.640 -21.888 -16.867 27.759 Atomic orbital electron populations 1.23310 0.76642 1.05417 1.02180 1.86039 1.23299 1.27036 1.88733 1.19228 0.92651 0.84639 0.96562 1.20535 0.91724 0.98782 1.06780 1.20771 1.00171 0.90500 0.95702 1.19484 0.93905 0.93343 1.04660 1.19355 0.95419 0.85218 0.88517 0.90766 1.22404 0.98746 0.93465 0.92806 1.61940 1.06321 1.53186 1.04717 1.22422 1.02802 0.99270 0.87689 1.22455 0.88156 0.99607 1.02293 1.45073 1.14714 1.27565 1.51175 1.16118 0.84399 0.80144 0.79300 1.90862 1.18700 1.74666 1.67303 1.45222 1.17781 1.30713 1.45016 1.21058 0.95078 0.85220 0.94913 1.19124 0.94480 0.94443 0.93294 1.21466 0.99790 1.12317 1.24820 0.92326 1.25862 0.95686 1.00758 0.96878 1.70057 1.12262 1.40290 1.34001 0.85455 0.78912 0.79062 0.77685 1.19758 1.20517 1.19108 1.20849 0.93519 0.97884 0.97376 1.21353 1.00957 0.91663 1.08428 0.91705 0.86552 0.91935 0.84535 0.84912 0.89808 0.96222 0.96260 0.89934 0.90775 0.91898 0.89513 0.96777 0.75380 0.75817 0.93893 0.93845 0.97253 0.97319 0.92556 0.84523 0.83540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -5.91 10.50 -92.36 -0.97 -6.87 16 3 C 0.11 2.13 6.69 22.51 0.15 2.28 16 4 C -0.16 -3.01 9.99 22.37 0.22 -2.78 16 5 C -0.05 -1.02 9.66 22.25 0.22 -0.80 16 6 C -0.11 -2.23 4.66 -19.85 -0.09 -2.32 16 7 C 0.22 5.16 2.21 44.25 0.10 5.25 16 8 H 0.07 2.07 6.00 -2.39 -0.01 2.05 16 9 C 0.06 1.26 4.64 86.30 0.40 1.66 16 10 N -0.54 -10.65 4.66 -948.85 -4.42 -15.07 16 11 C 0.03 0.42 9.54 127.69 1.22 1.64 16 12 C 0.02 0.46 9.40 127.69 1.20 1.66 16 13 N -0.73 -18.14 5.04 -461.41 -2.32 -20.47 16 14 C 0.70 24.20 8.51 179.06 1.52 25.72 16 15 O -0.63 -27.03 15.92 -3.99 -0.06 -27.10 16 16 N -0.73 -25.76 5.56 -478.55 -2.66 -28.42 16 17 C 0.16 7.05 5.61 86.38 0.48 7.54 16 18 C 0.02 1.22 5.09 29.85 0.15 1.37 16 19 C -0.55 -30.57 9.11 25.60 0.23 -30.34 16 20 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 21 C 0.01 0.39 5.46 84.65 0.46 0.85 16 22 N -0.93 -54.29 13.29 21.45 0.28 -54.01 16 23 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 27 C -0.08 -1.32 9.04 22.25 0.20 -1.11 16 28 C -0.21 -3.30 9.04 22.37 0.20 -3.10 16 29 H 0.06 0.48 7.66 -2.39 -0.02 0.47 16 30 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.51 7.66 -2.39 -0.02 0.49 16 32 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.13 2.34 8.03 -2.91 -0.02 2.32 16 34 H 0.08 1.69 7.95 -2.38 -0.02 1.68 16 35 H 0.02 0.57 7.89 -2.39 -0.02 0.55 16 36 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 39 H 0.06 1.34 6.58 -2.39 -0.02 1.32 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.01 0.31 8.13 -2.38 -0.02 0.29 16 42 H 0.41 7.79 6.88 -92.71 -0.64 7.16 16 43 H 0.41 12.07 8.49 -92.71 -0.79 11.28 16 44 H 0.04 1.96 8.14 -2.39 -0.02 1.95 16 45 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 48 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 49 H 0.14 1.80 6.92 -2.91 -0.02 1.78 16 50 H 0.15 1.66 6.30 -2.91 -0.02 1.65 16 Total: -1.00 -71.00 410.09 -0.83 -71.83 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: -0.48 Total: 25.56 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 7.78 Total: 8.79 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -9.12 Total: -117.96 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.03 Total: -33.97 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -71.00 -0.83 -71.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355081731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.040 kcal (2) G-P(sol) polarization free energy of solvation -71.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds