Wall clock time and date at job start Tue Mar 31 2020 18:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99902 * 2 1 4 4 C 1.46903 * 111.00382 * 123.95607 * 2 1 3 5 5 C 1.52995 * 109.47015 * 66.64190 * 4 2 1 6 6 O 1.42902 * 109.47326 * 63.90284 * 5 4 2 7 7 C 1.35972 * 117.00464 * 180.02562 * 6 5 4 8 8 C 1.38716 * 119.98729 * 179.97438 * 7 6 5 9 9 C 1.38092 * 120.01456 * 180.02562 * 8 7 6 10 10 C 1.38839 * 119.98273 * 0.02562 * 9 8 7 11 11 N 1.40114 * 120.01622 * 179.97438 * 10 9 8 12 12 C 1.34780 * 119.99779 * 35.25647 * 11 10 9 13 13 O 1.21295 * 119.99754 * 355.16419 * 12 11 10 14 14 C 1.50697 * 120.00171 * 175.16113 * 12 11 10 15 15 H 1.09004 * 109.47248 * 40.00301 * 14 12 11 16 16 N 1.46897 * 109.47315 * 159.99960 * 14 12 11 17 17 C 1.53001 * 109.47134 * 280.00273 * 14 12 11 18 18 C 1.53001 * 109.47087 * 174.99662 * 17 14 12 19 19 C 1.50705 * 109.47204 * 179.97438 * 18 17 14 20 20 H 1.07998 * 119.99467 * 0.02562 * 19 18 17 21 21 C 1.37871 * 119.99601 * 179.72729 * 19 18 17 22 22 N 1.31513 * 120.00780 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 119.99431 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46932 * 90.00176 * 23 21 19 25 25 H 1.48500 * 109.46811 * 209.99944 * 23 21 19 26 26 H 1.48495 * 109.47317 * 329.99858 * 23 21 19 27 27 C 1.38847 * 119.97161 * 0.27127 * 10 9 8 28 28 C 1.38079 * 119.98450 * 359.44820 * 27 10 9 29 29 H 1.09002 * 109.46648 * 296.04056 * 1 2 3 30 30 H 1.08990 * 109.47345 * 56.04533 * 1 2 3 31 31 H 1.09001 * 109.46777 * 176.04828 * 1 2 3 32 32 H 1.08994 * 109.47302 * 188.89870 * 3 2 1 33 33 H 1.09005 * 109.46880 * 308.89598 * 3 2 1 34 34 H 1.08995 * 109.47447 * 68.89235 * 3 2 1 35 35 H 1.09002 * 109.46765 * 306.64258 * 4 2 1 36 36 H 1.09002 * 109.46798 * 186.64361 * 4 2 1 37 37 H 1.09001 * 109.47323 * 303.89990 * 5 4 2 38 38 H 1.08999 * 109.46785 * 183.89901 * 5 4 2 39 39 H 1.07997 * 119.99614 * 0.02562 * 8 7 6 40 40 H 1.08000 * 120.00375 * 179.97438 * 9 8 7 41 41 H 0.96997 * 120.00326 * 215.26535 * 11 10 9 42 42 H 1.00899 * 110.99816 * 60.00123 * 16 14 12 43 43 H 1.00897 * 111.00471 * 183.95520 * 16 14 12 44 44 H 1.09004 * 109.46837 * 55.00183 * 17 14 12 45 45 H 1.08994 * 109.46976 * 294.99784 * 17 14 12 46 46 H 1.09007 * 109.47012 * 60.00018 * 18 17 14 47 47 H 1.09002 * 109.47362 * 300.00237 * 18 17 14 48 48 H 0.97000 * 119.99982 * 180.02562 * 22 21 19 49 49 H 1.08007 * 120.00644 * 179.69459 * 27 10 9 50 50 H 1.08006 * 119.99450 * 180.27376 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9956 -0.7660 1.1375 5 6 1.6445 -2.2448 0.9628 6 8 2.2987 -2.7556 -0.2005 7 6 2.0899 -4.0650 -0.5014 8 6 2.6944 -4.6249 -1.6174 9 6 2.4823 -5.9545 -1.9239 10 6 1.6634 -6.7309 -1.1150 11 7 1.4473 -8.0800 -1.4256 12 6 2.4407 -8.8151 -1.9635 13 8 3.4925 -8.2887 -2.2600 14 6 2.2447 -10.2910 -2.1966 15 1 1.2345 -10.4697 -2.5651 16 7 3.2186 -10.7636 -3.1896 17 6 2.4491 -11.0465 -0.8820 18 6 2.1286 -12.5280 -1.0900 19 6 2.3306 -13.2724 0.2048 20 1 2.6546 -12.7416 1.0877 21 6 2.0956 -14.6296 0.2634 22 7 1.6958 -15.2750 -0.8105 23 14 2.3453 -15.5521 1.8686 24 1 1.0780 -15.5507 2.6425 25 1 2.7461 -16.9521 1.5777 26 1 3.4103 -14.8869 2.6613 27 6 1.0537 -6.1683 -0.0016 28 6 1.2713 -4.8401 0.3069 29 1 -0.3633 0.4512 0.9234 30 1 -0.3633 0.5739 -0.8523 31 1 -0.3633 -1.0253 -0.0708 32 1 3.0735 1.3468 -0.1590 33 1 1.5232 1.9419 -0.7999 34 1 1.7802 1.8433 0.9586 35 1 1.5532 -0.3943 2.0618 36 1 3.0788 -0.6525 1.1818 37 1 0.5656 -2.3512 0.8491 38 1 1.9742 -2.8025 1.8393 39 1 3.3310 -4.0207 -2.2467 40 1 2.9527 -6.3901 -2.7930 41 1 0.5828 -8.4849 -1.2536 42 1 4.1635 -10.6090 -2.8712 43 1 3.0663 -11.7360 -3.4112 44 1 1.7872 -10.6352 -0.1198 45 1 3.4848 -10.9406 -0.5594 46 1 2.7905 -12.9394 -1.8522 47 1 1.0928 -12.6339 -1.4127 48 1 1.5302 -16.2298 -0.7690 49 1 0.4127 -6.7705 0.6252 50 1 0.8006 -4.4035 1.1755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424131255.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:02 Heat of formation + Delta-G solvation = -46.383999 kcal Electronic energy + Delta-G solvation = -27852.095115 eV Core-core repulsion = 23879.463115 eV Total energy + Delta-G solvation = -3972.632001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.64000 -39.73735 -38.13525 -37.05658 -35.50263 -34.27341 -32.88037 -31.29233 -30.58242 -29.92931 -28.74672 -28.04676 -26.39583 -25.04230 -24.05607 -22.99764 -22.11541 -21.33013 -20.54298 -19.78987 -18.41393 -17.59780 -17.28839 -16.76101 -16.29437 -16.00842 -15.55552 -15.09260 -15.04983 -14.94067 -14.72784 -14.47456 -14.40220 -14.04368 -13.55086 -13.43096 -13.20862 -13.06213 -12.97308 -12.83952 -12.74806 -12.54702 -12.21075 -12.18986 -12.04015 -11.76222 -11.70322 -11.16485 -11.10141 -10.96215 -10.90619 -10.69697 -10.03341 -9.95233 -9.78474 -9.33869 -9.25496 -9.01015 -8.80516 -8.46377 -8.24588 -7.71101 -6.10796 -4.14056 1.28605 1.33367 2.81206 2.99730 3.17976 3.25443 3.32493 3.35881 3.45574 3.77088 4.37541 4.41423 4.55087 4.69043 4.73360 4.80847 4.88240 4.89183 4.91875 4.97276 5.07866 5.12778 5.17563 5.24706 5.25515 5.32360 5.41312 5.44665 5.49667 5.51240 5.58271 5.70473 5.90264 5.94563 6.23616 6.23842 6.33498 6.48302 6.48820 6.50940 6.53719 6.83239 6.88934 7.34645 7.37380 7.48365 7.56041 7.61742 7.85383 7.86801 8.28049 8.33251 8.91826 9.51099 11.00031 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021684 B = 0.001752 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.949737 B =15976.057935 C =16813.776724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.540 5.540 3 C 0.025 3.975 4 C 0.055 3.945 5 C 0.063 3.937 6 O -0.299 6.299 7 C 0.111 3.889 8 C -0.133 4.133 9 C -0.081 4.081 10 C 0.115 3.885 11 N -0.675 5.675 12 C 0.525 3.475 13 O -0.520 6.520 14 C 0.077 3.923 15 H 0.099 0.901 16 N -0.830 5.830 17 C -0.138 4.138 18 C 0.024 3.976 19 C -0.525 4.525 20 H 0.055 0.945 21 C 0.059 3.941 22 N -0.893 5.893 23 Si 0.892 3.108 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 C -0.107 4.107 28 C -0.194 4.194 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.132 0.868 40 H 0.147 0.853 41 H 0.411 0.589 42 H 0.346 0.654 43 H 0.356 0.644 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.018 0.982 47 H 0.019 0.981 48 H 0.262 0.738 49 H 0.128 0.872 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.090 29.583 2.295 29.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.264 5.264 3 C -0.123 4.123 4 C -0.073 4.073 5 C -0.013 4.013 6 O -0.212 6.212 7 C 0.065 3.935 8 C -0.152 4.152 9 C -0.101 4.101 10 C 0.021 3.979 11 N -0.322 5.322 12 C 0.313 3.687 13 O -0.394 6.394 14 C -0.038 4.038 15 H 0.117 0.883 16 N -0.363 5.363 17 C -0.177 4.177 18 C -0.013 4.013 19 C -0.563 4.563 20 H 0.073 0.927 21 C -0.142 4.142 22 N -0.531 5.531 23 Si 0.720 3.280 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 C -0.128 4.128 28 C -0.213 4.213 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.150 0.850 40 H 0.164 0.836 41 H 0.247 0.753 42 H 0.160 0.840 43 H 0.171 0.829 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.037 0.963 47 H 0.038 0.962 48 H 0.071 0.929 49 H 0.146 0.854 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.398 30.168 0.974 30.375 hybrid contribution -0.572 -1.204 2.815 3.114 sum -3.970 28.964 3.789 29.479 Atomic orbital electron populations 1.22479 0.87351 1.02522 1.00531 1.61926 1.07929 1.13840 1.42728 1.22391 1.01219 0.88474 1.00251 1.22199 1.01754 0.91512 0.91858 1.22809 0.97175 0.93926 0.87400 1.86174 1.68117 1.22214 1.44725 1.18991 0.96041 0.83338 0.95092 1.20328 1.02888 0.94849 0.97146 1.21177 0.97699 0.91780 0.99454 1.17699 1.00927 0.84025 0.95234 1.43573 1.16146 1.08637 1.63800 1.21108 0.82909 0.89369 0.75285 1.90630 1.26900 1.72972 1.48885 1.21465 0.98811 0.89005 0.94560 0.88296 1.58745 1.07058 1.26186 1.44283 1.22395 1.01500 0.99600 0.94251 1.19111 0.97046 0.87684 0.97459 1.21177 1.45882 0.93120 0.96141 0.92705 1.25003 0.95058 0.97753 0.96431 1.69944 1.46054 1.09084 1.28055 0.86585 0.78497 0.79147 0.83747 1.20619 1.21115 1.19891 1.20714 1.01608 0.95142 0.95310 1.20950 1.03638 0.94858 1.01856 0.95682 0.91125 0.91155 0.91106 0.91240 0.95725 0.92678 0.89444 0.92001 0.91654 0.85022 0.83577 0.75304 0.84041 0.82851 0.92471 0.92566 0.96333 0.96250 0.92859 0.85421 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.33 60.07 0.56 0.68 16 2 N -0.54 -4.06 4.95 -251.26 -1.24 -5.30 16 3 C 0.02 0.14 9.60 60.06 0.58 0.72 16 4 C 0.05 0.36 5.34 -3.83 -0.02 0.34 16 5 C 0.06 0.48 4.79 37.15 0.18 0.66 16 6 O -0.30 -3.32 10.07 -19.65 -0.20 -3.52 16 7 C 0.11 1.33 6.69 -39.23 -0.26 1.06 16 8 C -0.13 -1.71 9.98 -39.46 -0.39 -2.10 16 9 C -0.08 -1.14 8.69 -39.41 -0.34 -1.49 16 10 C 0.12 1.56 6.30 -83.62 -0.53 1.03 16 11 N -0.68 -9.00 5.34 -9.83 -0.05 -9.05 16 12 C 0.53 8.53 6.92 -10.99 -0.08 8.45 16 13 O -0.52 -9.79 13.69 5.54 0.08 -9.71 16 14 C 0.08 1.26 3.21 -68.87 -0.22 1.04 16 15 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 16 N -0.83 -13.90 8.94 -5.66 -0.05 -13.95 16 17 C -0.14 -2.64 4.78 -26.73 -0.13 -2.77 16 18 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 19 C -0.53 -14.27 9.11 -34.44 -0.31 -14.59 16 20 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 23 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 27 C -0.11 -1.23 9.96 -39.41 -0.39 -1.62 16 28 C -0.19 -2.08 9.03 -39.46 -0.36 -2.44 16 29 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.40 8.06 -51.93 -0.42 -0.02 16 31 H 0.07 0.45 6.41 -51.93 -0.33 0.12 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.36 8.04 -51.93 -0.42 -0.06 16 34 H 0.02 0.12 8.13 -51.93 -0.42 -0.30 16 35 H 0.06 0.27 8.12 -51.93 -0.42 -0.15 16 36 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 37 H 0.06 0.43 5.92 -51.93 -0.31 0.12 16 38 H 0.07 0.43 7.66 -51.93 -0.40 0.03 16 39 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.15 2.26 6.23 -52.49 -0.33 1.93 16 41 H 0.41 4.37 8.82 -40.82 -0.36 4.01 16 42 H 0.35 5.89 8.58 -39.29 -0.34 5.56 16 43 H 0.36 5.97 7.55 -39.29 -0.30 5.68 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 50 H 0.13 1.04 6.29 -52.48 -0.33 0.71 16 LS Contribution 406.83 15.07 6.13 6.13 Total: -1.00 -32.34 406.83 -9.64 -41.98 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -8.07 Total: 11.38 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.95 Total: -9.03 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.61 Total: -53.34 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.12 Total: -13.24 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.34 -9.64 -41.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424131255.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.407 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds