Wall clock time and date at job start Tue Mar 31 2020 18:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00114 * 2 1 4 4 C 1.46900 * 110.99760 * 123.95188 * 2 1 3 5 5 C 1.53002 * 109.47299 * 75.50403 * 4 2 1 6 6 O 1.42898 * 109.47239 * 65.31110 * 5 4 2 7 7 C 1.35963 * 117.00170 * 180.02562 * 6 5 4 8 8 C 1.38727 * 119.98495 * 0.29941 * 7 6 5 9 9 C 1.38087 * 120.01617 * 180.25734 * 8 7 6 10 10 C 1.38847 * 119.98125 * 359.44345 * 9 8 7 11 11 N 1.40116 * 120.01472 * 180.25731 * 10 9 8 12 12 C 1.34775 * 120.00137 * 144.78371 * 11 10 9 13 13 O 1.21287 * 120.00001 * 4.67741 * 12 11 10 14 14 C 1.50704 * 119.99729 * 184.68479 * 12 11 10 15 15 H 1.09001 * 109.46820 * 319.99676 * 14 12 11 16 16 N 1.46896 * 109.46755 * 199.99872 * 14 12 11 17 17 C 1.52998 * 109.47024 * 79.99773 * 14 12 11 18 18 C 1.53000 * 109.46806 * 184.99737 * 17 14 12 19 19 C 1.50702 * 109.47164 * 179.97438 * 18 17 14 20 20 H 1.07996 * 120.00000 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99907 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00065 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99775 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47385 * 60.00640 * 23 21 19 25 25 H 1.48501 * 109.47232 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47242 * 300.00325 * 23 21 19 27 27 C 1.38851 * 119.97415 * 0.28123 * 10 9 8 28 28 C 1.38086 * 119.98105 * 359.97438 * 27 10 9 29 29 H 1.09000 * 109.47300 * 296.04632 * 1 2 3 30 30 H 1.08999 * 109.46675 * 56.05113 * 1 2 3 31 31 H 1.09004 * 109.46903 * 176.04296 * 1 2 3 32 32 H 1.09001 * 109.47382 * 178.98543 * 3 2 1 33 33 H 1.08997 * 109.46853 * 298.98616 * 3 2 1 34 34 H 1.09002 * 109.47148 * 58.98469 * 3 2 1 35 35 H 1.08999 * 109.47313 * 315.49961 * 4 2 1 36 36 H 1.09002 * 109.47068 * 195.50128 * 4 2 1 37 37 H 1.09006 * 109.46704 * 305.31391 * 5 4 2 38 38 H 1.09001 * 109.47438 * 185.31476 * 5 4 2 39 39 H 1.08003 * 119.99248 * 0.02562 * 8 7 6 40 40 H 1.07994 * 120.01149 * 179.71873 * 9 8 7 41 41 H 0.97003 * 119.99765 * 324.77974 * 11 10 9 42 42 H 1.00903 * 111.00134 * 299.99946 * 16 14 12 43 43 H 1.00897 * 111.00415 * 63.95027 * 16 14 12 44 44 H 1.08994 * 109.47198 * 304.99673 * 17 14 12 45 45 H 1.08995 * 109.47466 * 65.00241 * 17 14 12 46 46 H 1.09001 * 109.47504 * 300.00017 * 18 17 14 47 47 H 1.09000 * 109.47372 * 60.00174 * 18 17 14 48 48 H 0.97001 * 119.99766 * 179.97438 * 22 21 19 49 49 H 1.07993 * 120.00665 * 180.02562 * 27 10 9 50 50 H 1.07997 * 119.99056 * 180.02562 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.8411 -2.2626 0.8600 6 8 2.6655 -2.6290 -0.2482 7 6 2.6445 -3.9343 -0.6283 8 6 1.8415 -4.8407 0.0487 9 6 1.8238 -6.1675 -0.3334 10 6 2.6010 -6.5921 -1.4028 11 7 2.5794 -7.9372 -1.7944 12 6 2.6857 -8.2612 -3.0983 13 8 2.8850 -7.3955 -3.9240 14 6 2.5566 -9.6993 -3.5303 15 1 3.0665 -10.3415 -2.8122 16 7 3.1647 -9.8684 -4.8567 17 6 1.0765 -10.0814 -3.5953 18 6 0.9483 -11.5727 -3.9121 19 6 -0.5095 -11.9493 -3.9755 20 1 -1.2686 -11.1998 -3.8071 21 6 -0.8741 -13.2504 -4.2495 22 7 0.0504 -14.1630 -4.4551 23 14 -2.6811 -13.7173 -4.3274 24 1 -3.3516 -12.9257 -5.3899 25 1 -2.8056 -15.1648 -4.6350 26 1 -3.3227 -13.4329 -3.0187 27 6 3.4001 -5.6833 -2.0835 28 6 3.4209 -4.3578 -1.6970 29 1 -0.3634 0.4512 0.9233 30 1 -0.3632 0.5739 -0.8525 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0850 1.3425 0.0182 33 1 1.6608 1.8891 -0.8989 34 1 1.6313 1.9004 0.8808 35 1 1.4413 -0.5046 2.0392 36 1 3.0501 -0.5294 1.2780 37 1 0.7994 -2.4833 0.6265 38 1 2.1438 -2.8288 1.7409 39 1 1.2330 -4.5092 0.8771 40 1 1.2021 -6.8739 0.1965 41 1 2.4879 -8.6353 -1.1271 42 1 2.7092 -9.2830 -5.5408 43 1 4.1563 -9.6842 -4.8262 44 1 0.6048 -9.8720 -2.6353 45 1 0.5852 -9.5006 -4.3759 46 1 1.4201 -11.7821 -4.8721 47 1 1.4396 -12.1536 -3.1315 48 1 -0.2062 -15.0785 -4.6475 49 1 4.0045 -6.0129 -2.9156 50 1 4.0421 -3.6507 -2.2267 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424131256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:04 Heat of formation + Delta-G solvation = -70.624715 kcal Electronic energy + Delta-G solvation = -27871.801226 eV Core-core repulsion = 23898.118069 eV Total energy + Delta-G solvation = -3973.683157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.76315 -40.74842 -38.91745 -37.84959 -36.77205 -35.42247 -34.80596 -32.17805 -31.92043 -31.30206 -29.71658 -28.49920 -27.94531 -25.79391 -25.38495 -23.85590 -23.21880 -22.31507 -21.76847 -21.05175 -19.29204 -18.82337 -18.37951 -18.07368 -17.29381 -16.98692 -16.82143 -16.51264 -16.14726 -16.03390 -15.77027 -15.61668 -15.49991 -15.13990 -15.02958 -14.39115 -14.27260 -14.15715 -13.88064 -13.82262 -13.62204 -13.41634 -13.33348 -13.23452 -12.77427 -12.70724 -12.62825 -12.52378 -12.34896 -12.28110 -12.01560 -11.75637 -11.66120 -11.54392 -11.23891 -11.01130 -10.82288 -10.47071 -10.01095 -9.65819 -9.29112 -8.70327 -8.12443 -6.22477 0.30440 0.33931 1.42409 1.45222 1.46845 1.53108 2.05165 2.31344 2.45691 2.78623 2.98316 3.20617 3.52812 3.75139 3.82256 3.90603 3.98882 4.08724 4.10460 4.23987 4.27402 4.30725 4.38308 4.41490 4.45303 4.51101 4.59744 4.63963 4.73029 4.78751 4.81133 4.92926 4.94946 5.01465 5.01641 5.02147 5.25699 5.31255 5.34269 5.45215 5.58612 5.83823 5.86491 6.00278 6.04726 6.07061 6.09104 6.31852 6.39088 6.52564 6.53136 6.96019 7.06323 7.45449 8.98349 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016986 B = 0.001833 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.984627 B =15274.443719 C =16258.923491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.567 5.567 3 C 0.027 3.973 4 C 0.055 3.945 5 C 0.058 3.942 6 O -0.314 6.314 7 C 0.112 3.888 8 C -0.188 4.188 9 C -0.100 4.100 10 C 0.088 3.912 11 N -0.658 5.658 12 C 0.488 3.512 13 O -0.561 6.561 14 C 0.090 3.910 15 H 0.117 0.883 16 N -0.818 5.818 17 C -0.082 4.082 18 C 0.039 3.961 19 C -0.545 4.545 20 H 0.055 0.945 21 C 0.003 3.997 22 N -0.928 5.928 23 Si 0.958 3.042 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.266 1.266 27 C -0.096 4.096 28 C -0.148 4.148 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.425 0.575 42 H 0.346 0.654 43 H 0.348 0.652 44 H 0.069 0.931 45 H 0.041 0.959 46 H 0.006 0.994 47 H -0.003 1.003 48 H 0.262 0.738 49 H 0.126 0.874 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 28.173 16.541 33.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.292 5.292 3 C -0.121 4.121 4 C -0.073 4.073 5 C -0.018 4.018 6 O -0.228 6.228 7 C 0.066 3.934 8 C -0.207 4.207 9 C -0.120 4.120 10 C -0.005 4.005 11 N -0.304 5.304 12 C 0.275 3.725 13 O -0.440 6.440 14 C -0.026 4.026 15 H 0.134 0.866 16 N -0.347 5.347 17 C -0.121 4.121 18 C 0.001 3.999 19 C -0.583 4.583 20 H 0.073 0.927 21 C -0.195 4.195 22 N -0.568 5.568 23 Si 0.783 3.217 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.191 1.191 27 C -0.116 4.116 28 C -0.167 4.167 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.174 0.826 40 H 0.170 0.830 41 H 0.264 0.736 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.025 0.975 47 H 0.015 0.985 48 H 0.070 0.930 49 H 0.144 0.856 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.499 27.721 15.428 32.198 hybrid contribution -0.952 0.431 0.730 1.275 sum 4.547 28.152 16.158 32.776 Atomic orbital electron populations 1.22461 0.86724 1.02310 1.01170 1.61895 1.08669 1.14911 1.43695 1.22392 1.00702 0.87845 1.01181 1.22244 1.01882 0.90949 0.92203 1.23081 0.94514 0.96277 0.87887 1.86153 1.64429 1.22156 1.50069 1.19086 0.95921 0.83863 0.94499 1.21286 1.02966 0.92972 1.03510 1.21008 0.97561 0.96469 0.97011 1.17928 0.99334 0.84772 0.98504 1.43562 1.71766 1.06532 1.08525 1.22665 0.74371 0.93427 0.82028 1.90640 1.49145 1.51408 1.52780 1.21649 0.98505 0.89164 0.93264 0.86566 1.58977 1.08283 1.62066 1.05341 1.21400 0.91396 0.98301 1.00958 1.18835 0.94628 0.90403 0.95987 1.21709 0.94024 0.94611 1.47967 0.92663 1.25879 1.01847 0.96746 0.95050 1.70096 1.34706 1.02675 1.49366 0.85614 0.80125 0.76990 0.78966 1.19747 1.20968 1.19062 1.21033 0.98114 0.92643 0.99784 1.20389 1.02715 0.95634 0.97998 0.94370 0.91301 0.91688 0.91227 0.91294 0.94670 0.90332 0.89658 0.91656 0.89759 0.82609 0.82991 0.73622 0.84051 0.83862 0.91236 0.94024 0.97540 0.98463 0.92964 0.85615 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.40 127.69 1.20 1.44 16 2 N -0.57 -7.84 4.90 -948.83 -4.65 -12.49 16 3 C 0.03 0.28 9.56 127.69 1.22 1.50 16 4 C 0.05 0.58 5.38 86.30 0.46 1.05 16 5 C 0.06 0.73 4.93 71.98 0.35 1.08 16 6 O -0.31 -6.44 10.09 -93.13 -0.94 -7.38 16 7 C 0.11 2.49 6.69 22.50 0.15 2.64 16 8 C -0.19 -3.50 9.03 22.35 0.20 -3.30 16 9 C -0.10 -2.02 9.96 22.38 0.22 -1.80 16 10 C 0.09 2.23 6.30 38.11 0.24 2.47 16 11 N -0.66 -16.07 5.34 -303.39 -1.62 -17.69 16 12 C 0.49 14.77 6.91 87.66 0.61 15.37 16 13 O -0.56 -20.06 13.69 -3.05 -0.04 -20.11 16 14 C 0.09 2.88 3.15 44.17 0.14 3.02 16 15 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 16 N -0.82 -26.96 8.44 -171.80 -1.45 -28.41 16 17 C -0.08 -3.24 4.78 30.59 0.15 -3.09 16 18 C 0.04 1.98 4.86 29.85 0.15 2.12 16 19 C -0.54 -30.70 9.11 25.60 0.23 -30.47 16 20 H 0.06 3.00 7.74 -2.91 -0.02 2.97 16 21 C 0.00 0.16 5.46 84.65 0.46 0.62 16 22 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 23 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 C -0.10 -2.63 8.69 22.38 0.19 -2.44 16 28 C -0.15 -3.71 9.98 22.35 0.22 -3.49 16 29 H 0.04 0.33 8.09 -2.39 -0.02 0.31 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.77 6.78 -2.38 -0.02 0.75 16 32 H 0.07 0.72 7.96 -2.39 -0.02 0.70 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.08 0.51 7.96 -2.39 -0.02 0.49 16 36 H 0.08 0.90 7.82 -2.39 -0.02 0.88 16 37 H 0.07 0.78 6.26 -2.38 -0.01 0.77 16 38 H 0.08 0.73 7.67 -2.39 -0.02 0.71 16 39 H 0.16 1.94 6.29 -2.91 -0.02 1.92 16 40 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 41 H 0.43 7.90 8.82 -92.71 -0.82 7.09 16 42 H 0.35 11.76 8.58 -89.69 -0.77 10.99 16 43 H 0.35 9.75 9.06 -89.70 -0.81 8.94 16 44 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.01 0.35 7.75 -2.39 -0.02 0.33 16 47 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 48 H 0.26 14.99 8.31 -92.71 -0.77 14.21 16 49 H 0.13 3.85 6.23 -2.91 -0.02 3.83 16 50 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -72.76 409.25 -1.62 -74.39 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -1.44 Total: 34.66 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 6.21 Total: -13.27 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -7.44 Total: -114.54 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.98 Total: -27.48 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -72.76 -1.62 -74.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424131256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.762 kcal (2) G-P(sol) polarization free energy of solvation -72.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds