Wall clock time and date at job start Tue Mar 31 2020 18:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 110.99726 * 2 1 4 4 C 1.46890 * 111.00235 * 123.95486 * 2 1 3 5 5 C 1.53006 * 109.47306 * 66.04649 * 4 2 1 6 6 O 1.42896 * 109.46952 * 64.99746 * 5 4 2 7 7 C 1.35902 * 116.99832 * 179.97438 * 6 5 4 8 8 C 1.38802 * 120.01871 * 359.73367 * 7 6 5 9 9 C 1.38173 * 120.08012 * 179.69985 * 8 7 6 10 10 C 1.38161 * 120.12491 * 0.59040 * 9 8 7 11 11 C 1.38889 * 120.04002 * 359.68673 * 10 9 8 12 12 N 1.39921 * 120.04271 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99857 * 213.33494 * 12 11 10 14 14 O 1.21285 * 119.99926 * 5.27753 * 13 12 11 15 15 C 1.50698 * 119.99819 * 185.26771 * 13 12 11 16 16 H 1.09004 * 109.47506 * 40.00564 * 15 13 12 17 17 N 1.46907 * 109.47094 * 160.00174 * 15 13 12 18 18 C 1.52999 * 109.47756 * 280.00259 * 15 13 12 19 19 C 1.52995 * 109.47399 * 175.00045 * 18 15 13 20 20 C 1.50704 * 109.46992 * 179.97438 * 19 18 15 21 21 H 1.07997 * 119.99756 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99716 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00211 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99651 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47195 * 90.00053 * 24 22 20 26 26 H 1.48499 * 109.47075 * 209.99734 * 24 22 20 27 27 H 1.48497 * 109.47350 * 329.99967 * 24 22 20 28 28 C 1.38583 * 120.01710 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.47156 * 296.04377 * 1 2 3 30 30 H 1.09000 * 109.47485 * 56.04785 * 1 2 3 31 31 H 1.09006 * 109.47040 * 176.04258 * 1 2 3 32 32 H 1.08998 * 109.47459 * 183.95410 * 3 2 1 33 33 H 1.09000 * 109.47552 * 303.95668 * 3 2 1 34 34 H 1.09004 * 109.47514 * 63.95463 * 3 2 1 35 35 H 1.09000 * 109.47206 * 306.04703 * 4 2 1 36 36 H 1.08999 * 109.47347 * 186.05015 * 4 2 1 37 37 H 1.08997 * 109.46884 * 185.00289 * 5 4 2 38 38 H 1.09000 * 109.46894 * 304.99921 * 5 4 2 39 39 H 1.08002 * 119.96021 * 359.97438 * 8 7 6 40 40 H 1.07999 * 119.93811 * 180.27657 * 9 8 7 41 41 H 1.08002 * 119.98139 * 179.70234 * 10 9 8 42 42 H 0.96999 * 120.00376 * 33.33208 * 12 11 10 43 43 H 1.00900 * 110.99761 * 296.05351 * 17 15 13 44 44 H 1.00901 * 110.99444 * 60.00179 * 17 15 13 45 45 H 1.09001 * 109.46867 * 295.00384 * 18 15 13 46 46 H 1.09002 * 109.46854 * 54.99720 * 18 15 13 47 47 H 1.09001 * 109.47388 * 300.00021 * 19 18 15 48 48 H 1.08999 * 109.46757 * 60.00379 * 19 18 15 49 49 H 0.96997 * 120.00104 * 180.02562 * 23 22 20 50 50 H 1.08002 * 120.06635 * 0.02573 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 1.6315 -2.2426 0.9702 6 8 2.2956 -2.7695 -0.1801 7 6 2.0783 -4.0789 -0.4722 8 6 1.2469 -4.8419 0.3359 9 6 1.0201 -6.1717 0.0366 10 6 1.6296 -6.7491 -1.0607 11 6 2.4670 -5.9918 -1.8696 12 7 3.0838 -6.5764 -2.9811 13 6 4.3128 -6.1728 -3.3597 14 8 4.9235 -5.3727 -2.6830 15 6 4.9280 -6.7157 -4.6237 16 1 4.1643 -6.7866 -5.3982 17 7 5.9987 -5.8158 -5.0729 18 6 5.5096 -8.1046 -4.3523 19 6 6.0225 -8.7075 -5.6615 20 6 6.5959 -10.0753 -5.3940 21 1 6.5942 -10.4747 -4.3906 22 6 7.1226 -10.8168 -6.4303 23 7 7.1251 -10.3302 -7.6520 24 14 7.8327 -12.5124 -6.0987 25 1 6.7636 -13.5332 -6.2411 26 1 8.9182 -12.7935 -7.0723 27 1 8.3807 -12.5585 -4.7194 28 6 2.6914 -4.6545 -1.5737 29 1 -0.3633 0.4512 0.9233 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0827 1.3433 -0.0709 33 1 1.5897 1.9164 -0.8524 34 1 1.7043 1.8724 0.9233 35 1 1.5612 -0.3872 2.0627 36 1 3.0797 -0.6610 1.1756 37 1 1.9439 -2.7963 1.8556 38 1 0.5532 -2.3389 0.8432 39 1 0.7731 -4.3946 1.1973 40 1 0.3693 -6.7621 0.6644 41 1 1.4545 -7.7899 -1.2897 42 1 2.6270 -7.2722 -3.4792 43 1 5.6296 -4.9099 -5.3203 44 1 6.7196 -5.7333 -4.3717 45 1 6.3333 -8.0213 -3.6433 46 1 4.7347 -8.7477 -3.9350 47 1 5.1988 -8.7908 -6.3705 48 1 6.7974 -8.0644 -6.0786 49 1 7.4954 -10.8519 -8.3811 50 1 3.3427 -4.0636 -2.2007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424132952.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:08 Heat of formation + Delta-G solvation = -45.517136 kcal Electronic energy + Delta-G solvation = -28172.325155 eV Core-core repulsion = 24199.730745 eV Total energy + Delta-G solvation = -3972.594411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.76489 -39.79066 -38.17851 -37.10216 -35.27870 -34.52370 -32.81324 -31.34246 -30.15729 -29.82745 -29.28111 -28.03049 -26.45909 -24.96622 -24.01749 -22.86044 -22.30530 -21.16472 -20.48754 -19.81628 -18.70005 -17.29581 -16.76508 -16.47928 -16.30856 -16.13234 -15.84614 -15.52249 -15.41869 -15.08455 -14.88734 -14.67086 -14.34530 -14.11716 -13.61766 -13.49490 -13.38569 -13.00945 -12.87243 -12.73928 -12.34429 -12.22227 -12.11404 -12.05591 -11.98300 -11.71464 -11.57237 -11.29217 -11.03268 -10.89643 -10.67799 -10.56344 -10.29804 -10.09223 -9.81195 -9.39347 -9.00776 -8.78234 -8.47476 -8.37955 -8.23161 -8.11942 -5.93953 -3.96168 1.16177 1.36340 2.66096 2.84473 3.23776 3.34765 3.41445 3.44930 3.47456 3.72950 4.41123 4.49987 4.56014 4.70050 4.72220 4.78368 4.87288 4.89278 4.90328 4.97481 5.03657 5.09732 5.12353 5.18116 5.24384 5.36769 5.41523 5.44486 5.48114 5.49096 5.49993 5.76891 5.77515 6.13416 6.16877 6.28862 6.34586 6.39438 6.52883 6.55949 6.62355 6.80096 7.06187 7.28722 7.34693 7.48870 7.74970 7.76905 7.95296 8.12183 8.16408 8.47795 9.11723 9.67052 11.16888 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021501 B = 0.001907 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.925406 B =14675.826834 C =15534.199844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.540 5.540 3 C 0.025 3.975 4 C 0.054 3.946 5 C 0.063 3.937 6 O -0.295 6.295 7 C 0.150 3.850 8 C -0.234 4.234 9 C -0.061 4.061 10 C -0.187 4.187 11 C 0.193 3.807 12 N -0.674 5.674 13 C 0.483 3.517 14 O -0.527 6.527 15 C 0.081 3.919 16 H 0.103 0.897 17 N -0.805 5.805 18 C -0.097 4.097 19 C 0.031 3.969 20 C -0.523 4.523 21 H 0.052 0.948 22 C 0.058 3.942 23 N -0.892 5.892 24 Si 0.889 3.111 25 H -0.282 1.282 26 H -0.287 1.287 27 H -0.275 1.275 28 C -0.157 4.157 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.024 0.976 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.416 0.584 43 H 0.335 0.665 44 H 0.349 0.651 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.014 0.986 48 H 0.036 0.964 49 H 0.259 0.741 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.391 19.241 18.197 31.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.265 5.265 3 C -0.123 4.123 4 C -0.074 4.074 5 C -0.013 4.013 6 O -0.208 6.208 7 C 0.103 3.897 8 C -0.254 4.254 9 C -0.080 4.080 10 C -0.208 4.208 11 C 0.097 3.903 12 N -0.320 5.320 13 C 0.270 3.730 14 O -0.402 6.402 15 C -0.035 4.035 16 H 0.120 0.880 17 N -0.333 5.333 18 C -0.135 4.135 19 C -0.006 4.006 20 C -0.561 4.561 21 H 0.070 0.930 22 C -0.143 4.143 23 N -0.531 5.531 24 Si 0.717 3.283 25 H -0.208 1.208 26 H -0.213 1.213 27 H -0.200 1.200 28 C -0.178 4.178 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.253 0.747 43 H 0.147 0.853 44 H 0.163 0.837 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.032 0.968 48 H 0.054 0.946 49 H 0.069 0.931 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.411 19.170 17.287 30.588 hybrid contribution -0.623 -0.448 1.723 1.886 sum -17.034 18.722 19.010 31.655 Atomic orbital electron populations 1.22476 0.87387 1.02446 1.00550 1.61907 1.07894 1.13947 1.42706 1.22391 1.01132 0.88336 1.00447 1.22199 1.01878 0.91401 0.91887 1.22841 0.97001 0.93856 0.87566 1.86188 1.67025 1.21966 1.45647 1.18741 0.93890 0.83251 0.93782 1.21132 1.05361 0.95996 1.02861 1.20662 0.97550 0.94023 0.95728 1.20843 1.03086 0.99956 0.96920 1.17492 0.93526 0.90848 0.88390 1.43883 1.18192 1.40827 1.29075 1.23116 0.80046 0.80983 0.88890 1.90687 1.61001 1.34038 1.54490 1.21897 0.94541 0.96470 0.90641 0.87962 1.59004 1.12177 1.15712 1.46391 1.21696 0.99435 0.89807 1.02589 1.19021 0.96789 0.94820 0.89977 1.21274 1.39254 1.01596 0.94024 0.92964 1.24990 0.96123 0.98014 0.95205 1.69969 1.46110 1.37505 0.99531 0.86646 0.78832 0.84786 0.78013 1.20786 1.21258 1.19989 1.20249 1.04616 0.93636 0.99297 0.95683 0.91095 0.91221 0.91065 0.91144 0.95760 0.92650 0.89337 0.91605 0.91906 0.85869 0.85575 0.85438 0.74740 0.85263 0.83673 0.92678 0.92748 0.96797 0.94582 0.93088 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.33 60.07 0.56 0.69 16 2 N -0.54 -4.48 4.97 -251.26 -1.25 -5.72 16 3 C 0.03 0.16 9.57 60.06 0.57 0.74 16 4 C 0.05 0.39 5.34 -3.83 -0.02 0.37 16 5 C 0.06 0.52 4.79 37.16 0.18 0.70 16 6 O -0.30 -3.67 10.08 -19.43 -0.20 -3.86 16 7 C 0.15 1.94 6.68 -39.25 -0.26 1.67 16 8 C -0.23 -2.46 9.04 -39.40 -0.36 -2.82 16 9 C -0.06 -0.61 10.03 -39.63 -0.40 -1.01 16 10 C -0.19 -2.12 9.96 -39.37 -0.39 -2.51 16 11 C 0.19 2.62 6.28 -83.72 -0.53 2.09 16 12 N -0.67 -8.91 5.34 -9.88 -0.05 -8.96 16 13 C 0.48 7.61 6.81 -10.98 -0.07 7.54 16 14 O -0.53 -9.71 13.94 5.55 0.08 -9.63 16 15 C 0.08 1.32 3.15 -68.86 -0.22 1.10 16 16 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 17 N -0.80 -13.37 8.44 -5.65 -0.05 -13.42 16 18 C -0.10 -1.92 4.78 -26.73 -0.13 -2.05 16 19 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 20 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 21 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 23 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 24 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 28 C -0.16 -2.31 8.59 -39.25 -0.34 -2.65 16 29 H 0.02 0.14 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.07 0.47 6.37 -51.93 -0.33 0.14 16 32 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 34 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 35 H 0.06 0.29 8.12 -51.93 -0.42 -0.13 16 36 H 0.09 0.67 8.06 -51.93 -0.42 0.25 16 37 H 0.07 0.45 7.65 -51.93 -0.40 0.05 16 38 H 0.06 0.45 5.87 -51.93 -0.30 0.14 16 39 H 0.12 0.98 6.29 -52.49 -0.33 0.65 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.42 4.40 8.82 -40.82 -0.36 4.04 16 43 H 0.34 4.84 9.06 -39.29 -0.36 4.48 16 44 H 0.35 5.90 8.58 -39.29 -0.34 5.56 16 45 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.04 0.99 7.75 -51.93 -0.40 0.59 16 49 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.14 2.34 6.41 -52.49 -0.34 2.01 16 LS Contribution 409.06 15.07 6.16 6.16 Total: -1.00 -34.16 409.06 -9.71 -43.88 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -8.18 Total: 9.86 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -1.94 Total: -8.95 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.61 Total: -54.16 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.12 Total: -13.49 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.16 -9.71 -43.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424132952.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.640 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds