Wall clock time and date at job start Tue Mar 31 2020 18:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 110.99726 * 2 1 4 4 C 1.46890 * 111.00235 * 123.95486 * 2 1 3 5 5 C 1.53006 * 109.47306 * 66.04649 * 4 2 1 6 6 O 1.42896 * 109.46952 * 64.99746 * 5 4 2 7 7 C 1.35902 * 116.99832 * 179.97438 * 6 5 4 8 8 C 1.38802 * 120.01871 * 359.73367 * 7 6 5 9 9 C 1.38173 * 120.08012 * 179.69985 * 8 7 6 10 10 C 1.38161 * 120.12491 * 0.59040 * 9 8 7 11 11 C 1.38889 * 120.04002 * 359.68673 * 10 9 8 12 12 N 1.39921 * 120.04271 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99857 * 213.33494 * 12 11 10 14 14 O 1.21285 * 119.99926 * 5.27753 * 13 12 11 15 15 C 1.50698 * 119.99819 * 185.26771 * 13 12 11 16 16 H 1.09004 * 109.47506 * 40.00564 * 15 13 12 17 17 N 1.46907 * 109.47094 * 160.00174 * 15 13 12 18 18 C 1.52999 * 109.47756 * 280.00259 * 15 13 12 19 19 C 1.52995 * 109.47399 * 175.00045 * 18 15 13 20 20 C 1.50704 * 109.46992 * 179.97438 * 19 18 15 21 21 H 1.07997 * 119.99756 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99716 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00211 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99651 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47195 * 90.00053 * 24 22 20 26 26 H 1.48499 * 109.47075 * 209.99734 * 24 22 20 27 27 H 1.48497 * 109.47350 * 329.99967 * 24 22 20 28 28 C 1.38583 * 120.01710 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.47156 * 296.04377 * 1 2 3 30 30 H 1.09000 * 109.47485 * 56.04785 * 1 2 3 31 31 H 1.09006 * 109.47040 * 176.04258 * 1 2 3 32 32 H 1.08998 * 109.47459 * 183.95410 * 3 2 1 33 33 H 1.09000 * 109.47552 * 303.95668 * 3 2 1 34 34 H 1.09004 * 109.47514 * 63.95463 * 3 2 1 35 35 H 1.09000 * 109.47206 * 306.04703 * 4 2 1 36 36 H 1.08999 * 109.47347 * 186.05015 * 4 2 1 37 37 H 1.08997 * 109.46884 * 185.00289 * 5 4 2 38 38 H 1.09000 * 109.46894 * 304.99921 * 5 4 2 39 39 H 1.08002 * 119.96021 * 359.97438 * 8 7 6 40 40 H 1.07999 * 119.93811 * 180.27657 * 9 8 7 41 41 H 1.08002 * 119.98139 * 179.70234 * 10 9 8 42 42 H 0.96999 * 120.00376 * 33.33208 * 12 11 10 43 43 H 1.00900 * 110.99761 * 296.05351 * 17 15 13 44 44 H 1.00901 * 110.99444 * 60.00179 * 17 15 13 45 45 H 1.09001 * 109.46867 * 295.00384 * 18 15 13 46 46 H 1.09002 * 109.46854 * 54.99720 * 18 15 13 47 47 H 1.09001 * 109.47388 * 300.00021 * 19 18 15 48 48 H 1.08999 * 109.46757 * 60.00379 * 19 18 15 49 49 H 0.96997 * 120.00104 * 180.02562 * 23 22 20 50 50 H 1.08002 * 120.06635 * 0.02573 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 1.6315 -2.2426 0.9702 6 8 2.2956 -2.7695 -0.1801 7 6 2.0783 -4.0789 -0.4722 8 6 1.2469 -4.8419 0.3359 9 6 1.0201 -6.1717 0.0366 10 6 1.6296 -6.7491 -1.0607 11 6 2.4670 -5.9918 -1.8696 12 7 3.0838 -6.5764 -2.9811 13 6 4.3128 -6.1728 -3.3597 14 8 4.9235 -5.3727 -2.6830 15 6 4.9280 -6.7157 -4.6237 16 1 4.1643 -6.7866 -5.3982 17 7 5.9987 -5.8158 -5.0729 18 6 5.5096 -8.1046 -4.3523 19 6 6.0225 -8.7075 -5.6615 20 6 6.5959 -10.0753 -5.3940 21 1 6.5942 -10.4747 -4.3906 22 6 7.1226 -10.8168 -6.4303 23 7 7.1251 -10.3302 -7.6520 24 14 7.8327 -12.5124 -6.0987 25 1 6.7636 -13.5332 -6.2411 26 1 8.9182 -12.7935 -7.0723 27 1 8.3807 -12.5585 -4.7194 28 6 2.6914 -4.6545 -1.5737 29 1 -0.3633 0.4512 0.9233 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0827 1.3433 -0.0709 33 1 1.5897 1.9164 -0.8524 34 1 1.7043 1.8724 0.9233 35 1 1.5612 -0.3872 2.0627 36 1 3.0797 -0.6610 1.1756 37 1 1.9439 -2.7963 1.8556 38 1 0.5532 -2.3389 0.8432 39 1 0.7731 -4.3946 1.1973 40 1 0.3693 -6.7621 0.6644 41 1 1.4545 -7.7899 -1.2897 42 1 2.6270 -7.2722 -3.4792 43 1 5.6296 -4.9099 -5.3203 44 1 6.7196 -5.7333 -4.3717 45 1 6.3333 -8.0213 -3.6433 46 1 4.7347 -8.7477 -3.9350 47 1 5.1988 -8.7908 -6.3705 48 1 6.7974 -8.0644 -6.0786 49 1 7.4954 -10.8519 -8.3811 50 1 3.3427 -4.0636 -2.2007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424132952.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:07 Heat of formation + Delta-G solvation = -71.004875 kcal Electronic energy + Delta-G solvation = -28173.430387 eV Core-core repulsion = 24199.730745 eV Total energy + Delta-G solvation = -3973.699642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.83434 -40.76428 -38.97409 -37.86834 -36.82390 -35.59644 -34.82048 -32.08465 -31.94085 -30.76322 -30.12509 -28.52721 -28.11265 -25.93269 -25.31654 -23.91553 -23.20157 -22.36811 -21.64006 -21.10873 -19.62343 -18.69499 -18.13767 -17.41601 -17.38830 -17.13219 -16.90928 -16.74360 -16.45879 -16.07611 -15.88584 -15.71555 -15.62061 -15.16568 -15.06773 -14.50596 -14.27285 -14.23771 -13.88831 -13.71542 -13.42955 -13.42455 -13.28391 -12.88412 -12.78964 -12.73690 -12.64230 -12.55468 -12.44920 -12.28810 -12.02052 -11.85057 -11.69784 -11.54340 -11.27108 -11.19345 -10.99644 -10.47745 -9.69996 -9.43354 -9.29871 -9.02749 -8.12656 -6.22695 0.21165 0.47042 1.42184 1.43979 1.45373 1.54796 1.90198 2.32957 2.45716 2.81559 2.96572 3.20491 3.49503 3.72833 3.82477 3.93701 4.03417 4.07712 4.11345 4.21843 4.25154 4.28485 4.30471 4.37394 4.43971 4.50045 4.56615 4.60737 4.70032 4.75807 4.77841 4.81933 4.92805 4.99114 5.00368 5.24608 5.28182 5.29581 5.34166 5.48275 5.58698 5.83858 5.85929 5.99752 6.01929 6.05292 6.06500 6.31314 6.33403 6.48430 6.52696 6.95979 6.99831 7.45313 8.98459 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021501 B = 0.001907 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.925406 B =14675.826834 C =15534.199844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.569 5.569 3 C 0.026 3.974 4 C 0.055 3.945 5 C 0.057 3.943 6 O -0.321 6.321 7 C 0.138 3.862 8 C -0.226 4.226 9 C -0.054 4.054 10 C -0.187 4.187 11 C 0.172 3.828 12 N -0.661 5.661 13 C 0.489 3.511 14 O -0.557 6.557 15 C 0.090 3.910 16 H 0.117 0.883 17 N -0.816 5.816 18 C -0.083 4.083 19 C 0.039 3.961 20 C -0.543 4.543 21 H 0.056 0.944 22 C 0.001 3.999 23 N -0.929 5.929 24 Si 0.959 3.041 25 H -0.271 1.271 26 H -0.285 1.285 27 H -0.267 1.267 28 C -0.187 4.187 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.149 0.851 42 H 0.428 0.572 43 H 0.347 0.653 44 H 0.346 0.654 45 H 0.043 0.957 46 H 0.071 0.929 47 H -0.003 1.003 48 H 0.006 0.994 49 H 0.262 0.738 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.399 18.283 20.612 33.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.294 5.294 3 C -0.122 4.122 4 C -0.073 4.073 5 C -0.018 4.018 6 O -0.234 6.234 7 C 0.092 3.908 8 C -0.246 4.246 9 C -0.073 4.073 10 C -0.208 4.208 11 C 0.077 3.923 12 N -0.307 5.307 13 C 0.276 3.724 14 O -0.434 6.434 15 C -0.026 4.026 16 H 0.135 0.865 17 N -0.345 5.345 18 C -0.122 4.122 19 C 0.001 3.999 20 C -0.581 4.581 21 H 0.074 0.926 22 C -0.196 4.196 23 N -0.569 5.569 24 Si 0.784 3.216 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.192 1.192 28 C -0.208 4.208 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.171 0.829 40 H 0.181 0.819 41 H 0.167 0.833 42 H 0.267 0.733 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.061 0.939 46 H 0.090 0.910 47 H 0.015 0.985 48 H 0.024 0.976 49 H 0.070 0.930 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.464 18.213 19.715 32.578 hybrid contribution -0.062 -0.067 1.015 1.019 sum -18.526 18.146 20.730 33.200 Atomic orbital electron populations 1.22464 0.86531 1.02382 1.01287 1.61893 1.08945 1.14843 1.43683 1.22377 1.00717 0.87877 1.01193 1.22227 1.01448 0.90927 0.92660 1.23131 0.97519 0.94353 0.86803 1.86166 1.67919 1.21925 1.47427 1.18882 0.94343 0.83846 0.93778 1.21482 1.04052 0.96122 1.02901 1.21139 0.96889 0.94005 0.95230 1.21148 1.02114 1.00806 0.96713 1.17683 0.94739 0.90828 0.89057 1.43679 1.17314 1.40573 1.29171 1.22758 0.80752 0.80706 0.88218 1.90683 1.62081 1.35460 1.55184 1.21688 0.94656 0.94667 0.91607 0.86516 1.59000 1.12486 1.16596 1.46436 1.21428 0.99555 0.91840 0.99341 1.18834 0.95236 0.93727 0.92060 1.21734 1.39289 1.02864 0.94259 0.92568 1.25896 0.96528 1.02268 0.94958 1.70101 1.47093 1.39234 1.00503 0.85537 0.78184 0.79788 0.78045 1.19597 1.21037 1.19192 1.20190 1.05745 0.94394 1.00473 0.94224 0.91161 0.91543 0.91715 0.91004 0.94436 0.90185 0.90370 0.89985 0.90630 0.82930 0.81866 0.83296 0.73258 0.83962 0.84023 0.93867 0.91001 0.98490 0.97571 0.92963 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.33 127.69 1.19 1.44 16 2 N -0.57 -9.04 4.97 -948.86 -4.71 -13.75 16 3 C 0.03 0.33 9.57 127.69 1.22 1.55 16 4 C 0.06 0.73 5.34 86.31 0.46 1.20 16 5 C 0.06 0.84 4.79 71.98 0.35 1.19 16 6 O -0.32 -7.96 10.08 -92.45 -0.93 -8.90 16 7 C 0.14 3.51 6.68 22.49 0.15 3.66 16 8 C -0.23 -4.15 9.04 22.39 0.20 -3.95 16 9 C -0.05 -0.89 10.03 22.24 0.22 -0.67 16 10 C -0.19 -3.78 9.96 22.41 0.22 -3.56 16 11 C 0.17 4.56 6.28 38.14 0.24 4.80 16 12 N -0.66 -17.16 5.34 -303.55 -1.62 -18.78 16 13 C 0.49 15.60 6.81 87.66 0.60 16.20 16 14 O -0.56 -21.23 13.94 -3.04 -0.04 -21.27 16 15 C 0.09 2.97 3.15 44.17 0.14 3.11 16 16 H 0.12 3.51 8.14 -2.38 -0.02 3.49 16 17 N -0.82 -27.95 8.44 -171.79 -1.45 -29.40 16 18 C -0.08 -3.32 4.78 30.59 0.15 -3.17 16 19 C 0.04 1.99 4.86 29.85 0.15 2.14 16 20 C -0.54 -30.73 9.11 25.60 0.23 -30.50 16 21 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 22 C 0.00 0.08 5.46 84.66 0.46 0.54 16 23 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 24 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 28 C -0.19 -5.66 8.59 22.49 0.19 -5.47 16 29 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 31 H 0.07 0.81 6.37 -2.38 -0.02 0.80 16 32 H 0.06 0.87 8.12 -2.39 -0.02 0.85 16 33 H 0.07 0.85 8.12 -2.39 -0.02 0.83 16 34 H 0.04 0.36 8.14 -2.38 -0.02 0.34 16 35 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 36 H 0.08 1.18 8.06 -2.39 -0.02 1.16 16 37 H 0.08 0.92 7.65 -2.39 -0.02 0.90 16 38 H 0.08 0.91 5.87 -2.39 -0.01 0.89 16 39 H 0.15 1.82 6.29 -2.91 -0.02 1.80 16 40 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 42 H 0.43 8.55 8.82 -92.71 -0.82 7.73 16 43 H 0.35 10.34 9.06 -89.69 -0.81 9.52 16 44 H 0.35 12.17 8.58 -89.69 -0.77 11.40 16 45 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 48 H 0.01 0.34 7.75 -2.39 -0.02 0.32 16 49 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 50 H 0.11 3.91 6.41 -2.91 -0.02 3.89 16 Total: -1.00 -75.68 409.06 -1.71 -77.39 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: -1.44 Total: 36.06 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 6.17 Total: -11.49 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -7.50 Total: -118.26 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.97 Total: -30.17 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -75.68 -1.71 -77.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424132952.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.382 kcal (2) G-P(sol) polarization free energy of solvation -75.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds