Wall clock time and date at job start Tue Mar 31 2020 18:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00106 * 2 1 4 4 C 1.52997 * 109.46968 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47139 * 179.97438 * 4 3 2 6 6 N 1.46495 * 109.47450 * 179.97438 * 5 4 3 7 7 C 1.46494 * 120.00181 * 270.00569 * 6 5 4 8 8 C 1.50703 * 109.47426 * 275.12940 * 7 6 5 9 9 C 1.38644 * 120.78725 * 264.30161 * 8 7 6 10 10 C 1.38207 * 119.15939 * 179.79406 * 9 8 7 11 11 N 1.31861 * 120.76555 * 0.48490 * 10 9 8 12 12 C 1.31874 * 121.72678 * 359.74206 * 11 10 9 13 13 C 1.38198 * 120.76072 * 0.02562 * 12 11 10 14 14 C 1.34777 * 119.99737 * 90.00186 * 6 5 4 15 15 O 1.21279 * 120.00237 * 4.97395 * 14 6 5 16 16 C 1.50704 * 119.99893 * 184.97370 * 14 6 5 17 17 H 1.09009 * 109.46925 * 323.13938 * 16 14 6 18 18 N 1.46897 * 109.47042 * 203.14220 * 16 14 6 19 19 C 1.52991 * 109.47350 * 83.14085 * 16 14 6 20 20 C 1.53000 * 109.47325 * 185.00067 * 19 16 14 21 21 C 1.50697 * 109.47395 * 179.97438 * 20 19 16 22 22 H 1.08005 * 120.00046 * 0.02562 * 21 20 19 23 23 C 1.37881 * 120.00362 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99709 * 0.02562 * 23 21 20 25 25 Si 1.86791 * 120.00355 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47413 * 90.00190 * 25 23 21 27 27 H 1.48499 * 109.47418 * 210.00268 * 25 23 21 28 28 H 1.48509 * 109.47073 * 330.00312 * 25 23 21 29 29 H 1.08997 * 109.47284 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46932 * 300.00070 * 1 2 3 31 31 H 1.08995 * 109.47613 * 59.99816 * 1 2 3 32 32 H 1.09001 * 109.47099 * 60.00229 * 3 2 1 33 33 H 1.08999 * 109.46933 * 300.00061 * 3 2 1 34 34 H 1.09001 * 109.47154 * 60.00103 * 4 3 2 35 35 H 1.08992 * 109.47575 * 299.99837 * 4 3 2 36 36 H 1.09001 * 109.46647 * 60.00241 * 5 4 3 37 37 H 1.09006 * 109.47260 * 300.00580 * 5 4 3 38 38 H 1.09006 * 109.47362 * 35.13070 * 7 6 5 39 39 H 1.09003 * 109.47528 * 155.12442 * 7 6 5 40 40 H 1.08003 * 120.42104 * 359.97438 * 9 8 7 41 41 H 1.08005 * 119.61912 * 180.25292 * 10 9 8 42 42 H 1.08000 * 119.61955 * 179.97438 * 12 11 10 43 43 H 1.08009 * 120.41905 * 179.97438 * 13 12 11 44 44 H 1.00903 * 111.00128 * 176.04021 * 18 16 14 45 45 H 1.00898 * 110.99918 * 299.99649 * 18 16 14 46 46 H 1.09002 * 109.47284 * 304.99868 * 19 16 14 47 47 H 1.08999 * 109.47440 * 65.00080 * 19 16 14 48 48 H 1.09001 * 109.47249 * 299.99867 * 20 19 16 49 49 H 1.09000 * 109.47296 * 59.99944 * 20 19 16 50 50 H 0.96992 * 120.00063 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1579 2.5823 -0.0013 6 7 5.6182 2.4666 -0.0013 7 6 6.3485 2.4092 1.2674 8 6 6.6010 3.8089 1.7655 9 6 7.8029 4.4490 1.5046 10 6 7.9970 5.7344 1.9739 11 7 7.0595 6.3471 2.6699 12 6 5.9064 5.7675 2.9408 13 6 5.6392 4.4851 2.5004 14 6 6.2899 2.4129 -1.1685 15 8 5.6960 2.5509 -2.2169 16 6 7.7791 2.1815 -1.1710 17 1 8.2286 2.6992 -0.3235 18 7 8.3528 2.6980 -2.4207 19 6 8.0624 0.6820 -1.0612 20 6 9.5705 0.4556 -0.9382 21 6 9.8495 -1.0214 -0.8294 22 1 9.0328 -1.7279 -0.8467 23 6 11.1474 -1.4708 -0.7088 24 7 12.1419 -0.6105 -0.6882 25 14 11.4933 -3.3015 -0.5747 26 1 11.6858 -3.8698 -1.9331 27 1 12.7229 -3.5154 0.2301 28 1 10.3462 -3.9749 0.0856 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8567 0.6438 -0.8909 35 1 3.8575 0.6435 0.8890 36 1 3.8366 3.1233 0.8887 37 1 3.8358 3.1230 -0.8913 38 1 5.7574 1.8630 2.0025 39 1 7.3004 1.9001 1.1160 40 1 8.5764 3.9506 0.9393 41 1 8.9288 6.2415 1.7714 42 1 5.1626 6.3008 3.5142 43 1 4.6930 4.0154 2.7259 44 1 9.3583 2.6132 -2.4193 45 1 7.9519 2.2335 -3.2217 46 1 7.5617 0.2812 -0.1798 47 1 7.6905 0.1758 -1.9520 48 1 10.0712 0.8563 -1.8195 49 1 9.9425 0.9617 -0.0474 50 1 13.0549 -0.9265 -0.6030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424170441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:56 Heat of formation + Delta-G solvation = -57.675103 kcal Electronic energy + Delta-G solvation = -29484.865652 eV Core-core repulsion = 25511.744032 eV Total energy + Delta-G solvation = -3973.121620 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.67449 -39.68780 -38.18772 -36.31577 -35.65283 -33.62190 -32.85292 -31.87697 -31.33675 -29.95087 -27.93525 -27.03063 -26.50403 -25.09931 -23.63834 -23.40542 -22.39337 -21.79547 -20.49016 -18.95816 -17.69909 -17.05828 -16.63294 -16.46308 -16.36617 -16.14851 -15.97623 -15.80090 -15.26225 -14.86151 -14.59955 -14.47271 -14.11745 -14.09993 -13.79135 -13.75266 -13.41085 -13.08595 -12.77320 -12.50675 -12.46413 -12.35757 -12.17101 -12.02137 -11.80517 -11.46960 -11.33524 -11.10867 -11.01754 -10.93458 -10.70402 -10.04141 -9.98770 -9.92999 -9.81733 -9.68805 -9.32853 -9.27117 -9.24737 -8.77457 -8.47221 -8.25241 -6.11825 -4.14951 1.00654 1.03757 2.77099 2.89689 3.25632 3.32620 3.35583 3.57644 3.74276 4.32577 4.36935 4.43263 4.49467 4.58855 4.78950 4.83619 4.90093 4.94960 5.03388 5.04711 5.09709 5.11458 5.13099 5.19207 5.24642 5.24787 5.35525 5.38299 5.45885 5.47532 5.57928 5.66390 5.71406 5.84328 5.89627 6.01326 6.13112 6.21219 6.42643 6.48952 6.57094 6.80484 6.90078 7.24652 7.45672 7.50912 7.57063 7.83772 7.84088 7.85428 8.26826 8.31422 8.90794 9.50371 10.98994 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007040 B = 0.003713 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3976.546743 B = 7539.853554 C =10135.861381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.066 3.934 4 C -0.136 4.136 5 C 0.120 3.880 6 N -0.609 5.609 7 C 0.139 3.861 8 C -0.060 4.060 9 C -0.153 4.153 10 C 0.101 3.899 11 N -0.486 5.486 12 C 0.094 3.906 13 C -0.161 4.161 14 C 0.531 3.469 15 O -0.530 6.530 16 C 0.070 3.930 17 H 0.096 0.904 18 N -0.831 5.831 19 C -0.139 4.139 20 C 0.026 3.974 21 C -0.524 4.524 22 H 0.055 0.945 23 C 0.060 3.940 24 N -0.893 5.893 25 Si 0.892 3.108 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.141 0.859 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.132 0.868 44 H 0.355 0.645 45 H 0.346 0.654 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.018 0.982 49 H 0.018 0.982 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.030 9.243 6.957 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.011 4.011 4 C -0.175 4.175 5 C -0.003 4.003 6 N -0.343 5.343 7 C 0.016 3.984 8 C -0.069 4.069 9 C -0.173 4.173 10 C -0.055 4.055 11 N -0.195 5.195 12 C -0.063 4.063 13 C -0.182 4.182 14 C 0.320 3.680 15 O -0.405 6.405 16 C -0.045 4.045 17 H 0.113 0.887 18 N -0.363 5.363 19 C -0.179 4.179 20 C -0.011 4.011 21 C -0.562 4.562 22 H 0.073 0.927 23 C -0.142 4.142 24 N -0.531 5.531 25 Si 0.720 3.280 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.198 1.198 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.159 0.841 41 H 0.175 0.825 42 H 0.170 0.830 43 H 0.150 0.850 44 H 0.170 0.830 45 H 0.160 0.840 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.036 0.964 49 H 0.036 0.964 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.197 10.710 6.892 22.211 hybrid contribution 0.248 -2.679 -0.219 2.699 sum -17.949 8.032 6.673 20.765 Atomic orbital electron populations 1.22736 0.81082 1.02774 0.99879 1.87907 1.19640 1.27994 1.95399 1.22417 0.93822 0.84741 1.00142 1.21896 0.93000 0.98300 1.04301 1.21249 0.79724 0.96089 1.03271 1.47828 1.06203 1.74645 1.05631 1.20658 0.99618 0.92135 0.85953 1.20712 0.93846 0.97077 0.95287 1.22270 0.98022 0.96568 1.00465 1.22803 0.97851 0.91975 0.92900 1.67672 1.01757 1.37348 1.12757 1.22716 0.94249 0.92371 0.96983 1.22016 0.99985 0.96478 0.99703 1.20953 0.90140 0.74255 0.82677 1.90633 1.70282 1.48492 1.31081 1.21624 0.90097 0.97225 0.95535 0.88665 1.58772 1.11198 1.63274 1.03056 1.22417 1.02116 0.91727 1.01633 1.19091 0.87568 0.97210 0.97241 1.21163 0.92273 0.92122 1.50685 0.92694 1.25000 0.96342 0.97777 0.95104 1.69940 0.99231 1.33849 1.50113 0.86593 0.77821 0.85458 0.78156 1.20611 1.21141 1.19846 0.89635 0.94158 0.94074 0.93314 0.93107 0.90389 0.90749 0.90683 0.89601 0.88862 0.87472 0.84147 0.82501 0.82954 0.85030 0.83007 0.84039 0.92460 0.92467 0.96369 0.96398 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.41 10.70 -35.23 -0.38 -4.79 16 3 C 0.07 0.62 5.94 37.16 0.22 0.85 16 4 C -0.14 -1.48 5.91 -26.73 -0.16 -1.64 16 5 C 0.12 1.27 5.46 -4.04 -0.02 1.25 16 6 N -0.61 -7.67 2.46 -175.06 -0.43 -8.10 16 7 C 0.14 1.51 5.34 -5.20 -0.03 1.48 16 8 C -0.06 -0.64 5.50 -104.32 -0.57 -1.22 16 9 C -0.15 -1.77 9.46 -39.44 -0.37 -2.15 16 10 C 0.10 1.16 11.18 -17.55 -0.20 0.97 16 11 N -0.49 -5.87 10.36 -13.25 -0.14 -6.00 16 12 C 0.09 0.93 11.18 -17.55 -0.20 0.73 16 13 C -0.16 -1.50 9.45 -39.44 -0.37 -1.87 16 14 C 0.53 8.57 6.89 -10.98 -0.08 8.49 16 15 O -0.53 -10.11 15.83 5.56 0.09 -10.03 16 16 C 0.07 1.15 2.35 -68.87 -0.16 0.98 16 17 H 0.10 1.44 4.32 -51.92 -0.22 1.22 16 18 N -0.83 -13.88 8.97 -5.66 -0.05 -13.93 16 19 C -0.14 -2.64 4.50 -26.74 -0.12 -2.76 16 20 C 0.03 0.61 4.74 -27.88 -0.13 0.47 16 21 C -0.52 -14.03 9.11 -34.44 -0.31 -14.34 16 22 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 23 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 24 N -0.89 -25.44 13.29 55.43 0.74 -24.71 16 25 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.60 7.06 -51.93 -0.37 0.23 16 37 H 0.09 1.04 7.36 -51.93 -0.38 0.66 16 38 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.11 1.29 5.05 -51.93 -0.26 1.03 16 40 H 0.14 1.62 6.12 -52.48 -0.32 1.30 16 41 H 0.16 1.48 8.06 -52.48 -0.42 1.05 16 42 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.13 0.88 7.46 -52.48 -0.39 0.48 16 44 H 0.35 5.89 7.55 -39.29 -0.30 5.59 16 45 H 0.35 5.93 8.56 -39.29 -0.34 5.59 16 46 H 0.06 1.04 7.30 -51.93 -0.38 0.66 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 407.15 15.07 6.14 6.14 Total: -1.00 -32.88 407.15 -8.47 -41.35 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -7.93 Total: 9.95 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -1.49 Total: -5.85 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.12 Total: -52.75 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.29 Total: -14.82 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.88 -8.47 -41.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424170441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.322 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds