Wall clock time and date at job start Tue Mar 31 2020 18:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00211 * 2 1 4 4 C 1.46892 * 111.00241 * 123.96020 * 2 1 3 5 5 C 1.52994 * 109.47281 * 66.04193 * 4 2 1 6 6 C 1.53003 * 109.47213 * 180.02562 * 5 4 2 7 7 O 1.42899 * 109.47433 * 179.97438 * 6 5 4 8 8 C 1.35893 * 117.00392 * 179.97438 * 7 6 5 9 9 C 1.38736 * 120.05957 * 180.02562 * 8 7 6 10 10 C 1.38138 * 119.94337 * 180.30421 * 9 8 7 11 11 C 1.38271 * 120.05803 * 359.41293 * 10 9 8 12 12 C 1.50698 * 119.94467 * 180.30180 * 11 10 9 13 13 N 1.46501 * 109.47469 * 270.30588 * 12 11 10 14 14 C 1.34773 * 120.00321 * 180.02562 * 13 12 11 15 15 O 1.21592 * 119.99689 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00512 * 179.97438 * 14 13 12 17 17 C 1.46494 * 120.00049 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.46812 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00112 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00003 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99914 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00228 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46990 * 90.00191 * 22 20 18 24 24 H 1.48496 * 109.47147 * 210.00364 * 22 20 18 25 25 H 1.48498 * 109.47108 * 330.00267 * 22 20 18 26 26 C 1.38259 * 120.10889 * 0.60974 * 11 10 9 27 27 C 1.38146 * 120.05909 * 359.67363 * 26 11 10 28 28 H 1.09000 * 109.47382 * 296.04392 * 1 2 3 29 29 H 1.09003 * 109.47558 * 56.03820 * 1 2 3 30 30 H 1.09001 * 109.47656 * 176.04329 * 1 2 3 31 31 H 1.08995 * 109.47297 * 183.95345 * 3 2 1 32 32 H 1.09002 * 109.47166 * 303.95819 * 3 2 1 33 33 H 1.09008 * 109.46905 * 63.95402 * 3 2 1 34 34 H 1.09007 * 109.47081 * 306.04195 * 4 2 1 35 35 H 1.08998 * 109.47619 * 186.04997 * 4 2 1 36 36 H 1.08994 * 109.47469 * 60.00372 * 5 4 2 37 37 H 1.09001 * 109.47551 * 299.99960 * 5 4 2 38 38 H 1.09002 * 109.47184 * 60.00229 * 6 5 4 39 39 H 1.09001 * 109.46987 * 299.99936 * 6 5 4 40 40 H 1.08002 * 120.02291 * 0.02562 * 9 8 7 41 41 H 1.08004 * 119.96766 * 179.69880 * 10 9 8 42 42 H 1.09000 * 109.47353 * 30.30435 * 12 11 10 43 43 H 1.09002 * 109.47057 * 150.30403 * 12 11 10 44 44 H 0.97002 * 120.00028 * 359.97438 * 13 12 11 45 45 H 0.96995 * 119.99458 * 359.97438 * 16 14 13 46 46 H 1.09000 * 109.47428 * 299.99296 * 17 16 14 47 47 H 1.08996 * 109.47404 * 60.00070 * 17 16 14 48 48 H 0.97002 * 119.99732 * 180.02562 * 21 20 18 49 49 H 1.08006 * 119.97147 * 179.69573 * 26 11 10 50 50 H 1.07993 * 120.03340 * 180.02562 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1374 5 6 1.6314 -2.2426 0.9701 6 6 2.1792 -3.0404 2.1552 7 8 1.8387 -4.4195 1.9993 8 6 2.2540 -5.2715 2.9731 9 6 1.9587 -6.6242 2.8852 10 6 2.3766 -7.4871 3.8797 11 6 3.0991 -7.0058 4.9558 12 6 3.5596 -7.9506 6.0358 13 7 2.5302 -8.0446 7.0740 14 6 2.7252 -8.8371 8.1465 15 8 3.7553 -9.4744 8.2522 16 7 1.7784 -8.9232 9.1019 17 6 1.9902 -9.7851 10.2674 18 6 0.7919 -9.7024 11.1776 19 1 -0.0435 -9.0706 10.9145 20 6 0.7623 -10.4332 12.3464 21 7 1.7799 -11.2022 12.6671 22 14 -0.7226 -10.3301 13.4750 23 1 -1.7095 -11.3712 13.0910 24 1 -0.2930 -10.5493 14.8795 25 1 -1.3458 -8.9878 13.3518 26 6 3.3943 -5.6581 5.0460 27 6 2.9737 -4.7899 4.0571 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5741 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0827 1.3432 -0.0708 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8723 0.9234 34 1 1.5611 -0.3873 2.0627 35 1 3.0797 -0.6611 1.1755 36 1 2.0657 -2.6214 0.0450 37 1 0.5471 -2.3476 0.9322 38 1 1.7446 -2.6616 3.0802 39 1 3.2635 -2.9356 2.1936 40 1 1.3987 -7.0014 2.0423 41 1 2.1428 -8.5395 3.8141 42 1 3.7331 -8.9370 5.6059 43 1 4.4851 -7.5776 6.4745 44 1 1.7086 -7.5359 6.9898 45 1 0.9569 -8.4145 9.0177 46 1 2.1259 -10.8152 9.9377 47 1 2.8787 -9.4559 10.8061 48 1 1.7589 -11.7166 13.4892 49 1 3.9546 -5.2837 5.8900 50 1 3.2048 -3.7374 4.1277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426409689.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:11 Heat of formation + Delta-G solvation = -71.635390 kcal Electronic energy + Delta-G solvation = -26864.598849 eV Core-core repulsion = 22890.871866 eV Total energy + Delta-G solvation = -3973.726983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.30041 -40.74916 -39.08582 -38.37552 -36.24871 -35.57720 -34.32225 -33.61589 -31.99051 -31.49946 -29.18973 -28.51456 -27.68576 -26.36394 -24.50371 -24.41122 -23.09947 -22.06946 -21.84650 -21.74361 -19.83878 -19.16316 -18.11314 -17.45704 -17.37560 -17.24681 -16.55349 -16.45639 -16.20902 -16.17832 -16.01625 -15.70573 -15.30562 -14.99826 -14.87295 -14.63989 -14.55315 -14.38616 -14.08748 -14.00274 -13.40685 -13.35375 -13.32669 -12.94805 -12.87542 -12.71466 -12.69043 -12.51955 -12.39241 -12.31400 -12.20891 -12.12928 -11.69989 -11.50297 -11.45600 -11.24515 -10.78652 -10.25817 -9.98047 -9.55694 -9.36274 -9.17645 -8.26606 -6.42924 0.28079 0.37709 1.44545 1.47294 1.58242 1.97631 2.10039 2.27351 2.41079 2.80697 3.05394 3.08384 3.64622 3.73259 3.79738 3.85581 3.93003 4.05803 4.07598 4.23188 4.31651 4.36762 4.37361 4.41202 4.47243 4.60135 4.62175 4.70464 4.72243 4.73687 4.78902 4.97959 5.01293 5.07950 5.08585 5.11061 5.16491 5.26355 5.29891 5.34682 5.50500 5.53267 5.64209 5.70268 5.76940 5.87411 6.02437 6.04416 6.28992 6.42926 6.68945 7.26410 7.33615 7.74898 8.85771 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017446 B = 0.001469 C = 0.001396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.531274 B =19057.653145 C =20045.672497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.564 5.564 3 C 0.023 3.977 4 C 0.060 3.940 5 C -0.108 4.108 6 C 0.057 3.943 7 O -0.327 6.327 8 C 0.129 3.871 9 C -0.162 4.162 10 C -0.060 4.060 11 C -0.146 4.146 12 C 0.188 3.812 13 N -0.728 5.728 14 C 0.691 3.309 15 O -0.649 6.649 16 N -0.723 5.723 17 C 0.285 3.715 18 C -0.555 4.555 19 H 0.083 0.917 20 C 0.005 3.995 21 N -0.931 5.931 22 Si 0.986 3.014 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.256 1.256 26 C -0.061 4.061 27 C -0.210 4.210 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.028 0.972 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.408 0.592 45 H 0.404 0.596 46 H -0.014 1.014 47 H -0.014 1.014 48 H 0.269 0.731 49 H 0.137 0.863 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.593 25.533 -27.657 37.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.288 5.288 3 C -0.125 4.125 4 C -0.068 4.068 5 C -0.146 4.146 6 C -0.018 4.018 7 O -0.241 6.241 8 C 0.083 3.917 9 C -0.180 4.180 10 C -0.078 4.078 11 C -0.146 4.146 12 C 0.064 3.936 13 N -0.386 5.386 14 C 0.391 3.609 15 O -0.532 6.532 16 N -0.377 5.377 17 C 0.161 3.839 18 C -0.593 4.593 19 H 0.101 0.899 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.809 3.191 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.180 1.180 26 C -0.079 4.079 27 C -0.229 4.229 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.244 0.756 45 H 0.239 0.761 46 H 0.004 0.996 47 H 0.004 0.996 48 H 0.077 0.923 49 H 0.154 0.846 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.537 24.588 -28.034 37.321 hybrid contribution -1.108 0.507 1.548 1.970 sum -2.644 25.095 -26.486 36.583 Atomic orbital electron populations 1.22494 0.86847 1.02725 1.00952 1.61935 1.08765 1.14814 1.43278 1.22428 1.01179 0.87867 1.01010 1.21983 1.01006 0.92135 0.91717 1.21423 1.02002 0.93609 0.97603 1.22907 1.00948 0.78044 0.99918 1.86028 1.74122 1.19439 1.44532 1.19200 0.93926 0.90408 0.88134 1.20595 1.05342 0.90443 1.01667 1.21050 0.94463 1.00325 0.91996 1.19655 1.03683 0.94359 0.96948 1.19896 0.90032 0.98197 0.85469 1.45034 1.23109 1.49152 1.21261 1.16325 0.83452 0.80477 0.80686 1.90841 1.30039 1.51762 1.80555 1.45299 1.20290 1.49733 1.22370 1.18413 0.95967 0.87731 0.81750 1.21607 1.03333 1.28416 1.05928 0.89890 1.26051 0.99895 0.94103 0.99451 1.70149 1.32749 1.28574 1.25464 0.85146 0.77811 0.79287 0.76879 1.19622 1.20926 1.18005 1.21060 0.96884 0.92006 0.97976 1.21416 1.04222 1.01584 0.95638 0.95368 0.90737 0.91046 0.90751 0.90700 0.95323 0.94010 0.89629 0.90729 0.91093 0.91050 0.90695 0.84097 0.84217 0.91812 0.91818 0.75590 0.76081 0.99627 0.99592 0.92255 0.84565 0.83397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.32 127.69 1.19 1.34 16 2 N -0.56 -5.72 5.02 -948.87 -4.76 -10.48 16 3 C 0.02 0.17 9.57 127.69 1.22 1.39 16 4 C 0.06 0.50 4.96 86.30 0.43 0.93 16 5 C -0.11 -1.08 5.51 30.59 0.17 -0.91 16 6 C 0.06 0.61 4.74 71.98 0.34 0.95 16 7 O -0.33 -5.54 10.14 -92.34 -0.94 -6.48 16 8 C 0.13 2.30 6.69 22.51 0.15 2.46 16 9 C -0.16 -2.91 9.99 22.37 0.22 -2.68 16 10 C -0.06 -1.12 9.69 22.25 0.22 -0.90 16 11 C -0.15 -2.96 5.25 -19.85 -0.10 -3.06 16 12 C 0.19 4.91 5.79 85.63 0.50 5.41 16 13 N -0.73 -21.76 5.55 -482.29 -2.68 -24.44 16 14 C 0.69 29.41 8.57 179.06 1.53 30.94 16 15 O -0.65 -34.13 16.34 -4.01 -0.07 -34.19 16 16 N -0.72 -31.81 5.55 -482.30 -2.68 -34.49 16 17 C 0.28 16.03 5.43 85.64 0.46 16.50 16 18 C -0.55 -30.58 9.28 25.60 0.24 -30.35 16 19 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 20 C 0.00 0.25 5.46 84.65 0.46 0.72 16 21 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 22 Si 0.99 42.57 29.54 68.60 2.03 44.59 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 25 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 26 C -0.06 -1.09 9.69 22.25 0.22 -0.87 16 27 C -0.21 -3.36 9.04 22.37 0.20 -3.15 16 28 H 0.03 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.07 0.55 8.12 -2.39 -0.02 0.53 16 30 H 0.07 0.63 6.47 -2.39 -0.02 0.61 16 31 H 0.07 0.47 8.12 -2.39 -0.02 0.45 16 32 H 0.07 0.47 8.12 -2.39 -0.02 0.45 16 33 H 0.03 0.20 8.14 -2.38 -0.02 0.18 16 34 H 0.04 0.33 8.12 -2.38 -0.02 0.31 16 35 H 0.09 0.60 8.06 -2.39 -0.02 0.58 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.77 6.55 -2.39 -0.02 0.75 16 38 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 39 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 40 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 42 H 0.06 1.77 8.09 -2.39 -0.02 1.76 16 43 H 0.06 1.76 8.08 -2.39 -0.02 1.74 16 44 H 0.41 9.73 8.48 -92.71 -0.79 8.95 16 45 H 0.40 14.69 8.33 -92.71 -0.77 13.92 16 46 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 47 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 48 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 49 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 50 H 0.15 1.66 6.30 -2.91 -0.02 1.64 16 Total: -1.00 -75.19 414.69 -1.98 -77.17 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: -0.62 Total: 25.95 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 7.45 Total: 18.71 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -9.83 Total: -125.75 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -1.00 Total: -40.67 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -75.19 -1.98 -77.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426409689.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.538 kcal (2) G-P(sol) polarization free energy of solvation -75.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds