Wall clock time and date at job start Tue Mar 31 2020 18:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 N 1.46505 * 109.46967 * 270.02099 * 8 7 6 10 10 C 1.46494 * 120.00109 * 269.99636 * 9 8 7 11 11 C 1.53004 * 109.46866 * 90.00119 * 10 9 8 12 12 N 1.46896 * 109.47252 * 179.97438 * 11 10 9 13 13 C 1.46899 * 111.00040 * 66.04690 * 12 11 10 14 14 C 1.46904 * 111.00428 * 190.00293 * 12 11 10 15 15 C 1.34779 * 119.99466 * 90.00339 * 9 8 7 16 16 O 1.21582 * 120.00408 * 359.97438 * 15 9 8 17 17 N 1.34784 * 119.99180 * 179.97438 * 15 9 8 18 18 C 1.46504 * 119.99178 * 180.02562 * 17 15 9 19 19 C 1.50708 * 109.46590 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99895 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99989 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99738 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00078 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47060 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47271 * 120.00555 * 23 21 19 26 26 H 1.48500 * 109.47117 * 240.00468 * 23 21 19 27 27 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 28 28 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 29 29 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 30 30 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 32 32 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 33 33 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 34 34 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 35 35 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 36 36 H 1.08992 * 109.47463 * 210.00204 * 10 9 8 37 37 H 1.08992 * 109.47237 * 330.00773 * 10 9 8 38 38 H 1.09002 * 109.47645 * 300.00294 * 11 10 9 39 39 H 1.09004 * 109.47003 * 60.00285 * 11 10 9 40 40 H 1.09001 * 109.46819 * 60.00231 * 13 12 11 41 41 H 1.08998 * 109.47234 * 179.97438 * 13 12 11 42 42 H 1.08992 * 109.47322 * 300.00122 * 13 12 11 43 43 H 1.09004 * 109.46806 * 59.99605 * 14 12 11 44 44 H 1.08989 * 109.47672 * 179.97438 * 14 12 11 45 45 H 1.09001 * 109.46784 * 300.00631 * 14 12 11 46 46 H 0.96991 * 120.00579 * 359.97438 * 17 15 9 47 47 H 1.08997 * 109.47373 * 299.99266 * 18 17 15 48 48 H 1.08993 * 109.47571 * 59.99747 * 18 17 15 49 49 H 0.97001 * 120.00010 * 179.97438 * 22 21 19 50 50 H 1.08006 * 120.02917 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 7 6.0473 2.6245 -1.3826 10 6 6.3590 1.3708 -2.0734 11 6 5.1091 0.8611 -2.7937 12 7 5.4216 -0.3957 -3.4869 13 6 5.7315 -1.4635 -2.5268 14 6 4.3238 -0.7921 -4.3790 15 6 6.2084 3.8022 -2.0180 16 8 5.9494 4.8427 -1.4448 17 7 6.6566 3.8263 -3.2889 18 6 6.8321 5.1064 -3.9794 19 6 7.3402 4.8580 -5.3763 20 1 7.5151 3.8477 -5.7156 21 6 7.5816 5.9205 -6.2212 22 7 7.3689 7.1508 -5.8078 23 14 8.2106 5.6127 -7.9529 24 1 8.3658 4.1519 -8.1708 25 1 7.2411 6.1591 -8.9362 26 1 9.5244 6.2822 -8.1287 27 6 3.4311 1.2849 -0.0001 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2128 2.3203 -0.0106 32 1 1.3339 4.5114 0.0011 33 1 3.7922 4.6381 0.0002 34 1 5.8760 3.5065 0.5126 35 1 5.9718 1.7291 0.5125 36 1 7.1521 1.5441 -2.8006 37 1 6.6880 0.6278 -1.3470 38 1 4.3158 0.6878 -2.0665 39 1 4.7800 1.6042 -3.5202 40 1 4.8725 -1.6275 -1.8762 41 1 5.9587 -2.3828 -3.0666 42 1 6.5926 -1.1726 -1.9253 43 1 4.1617 -0.0131 -5.1239 44 1 4.5815 -1.7252 -4.8798 45 1 3.4139 -0.9318 -3.7953 46 1 6.8635 2.9963 -3.7461 47 1 5.8760 5.6275 -4.0275 48 1 7.5518 5.7174 -3.4347 49 1 7.5391 7.8984 -6.4020 50 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426418341.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:41 Heat of formation + Delta-G solvation = -26.231292 kcal Electronic energy + Delta-G solvation = -30111.157145 eV Core-core repulsion = 26139.399031 eV Total energy + Delta-G solvation = -3971.758114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.39566 -39.55437 -37.62271 -37.47144 -35.07091 -34.15794 -32.43635 -31.47840 -30.56077 -29.14790 -27.68620 -27.59808 -27.25600 -25.54436 -24.16225 -22.63260 -22.39196 -21.20828 -21.11704 -19.19691 -18.03382 -17.86005 -16.34397 -16.16107 -16.01415 -15.91618 -15.86260 -15.54647 -15.17511 -14.87002 -14.58249 -14.43826 -14.09672 -13.80367 -13.45327 -13.35039 -13.21399 -13.00866 -12.67201 -12.51325 -12.31829 -12.02954 -11.94855 -11.89521 -11.76734 -11.60222 -11.52487 -11.42056 -11.18669 -10.92936 -10.87282 -10.85610 -10.81527 -10.23118 -9.38856 -9.28948 -8.90044 -8.68014 -8.53731 -8.29696 -8.19612 -7.68160 -6.10378 -4.16026 1.22697 1.46059 3.08448 3.15306 3.27905 3.35250 3.39266 3.81608 3.91465 4.06708 4.37541 4.67415 4.73517 4.77720 4.88437 4.90412 4.97666 5.04328 5.10777 5.11586 5.19151 5.25346 5.26366 5.30619 5.43482 5.45633 5.47118 5.52674 5.57550 5.64966 5.78430 5.80192 5.84079 5.86336 6.03222 6.10061 6.23084 6.48644 6.64573 6.72068 6.78783 6.94760 6.97075 7.17910 7.28893 7.58285 7.59507 7.62977 7.90556 8.07675 8.82431 8.96305 9.37619 9.53456 10.99937 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011440 B = 0.003368 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.041598 B = 8310.834131 C = 9377.305573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.115 3.885 4 C -0.207 4.207 5 C -0.084 4.084 6 C -0.123 4.123 7 C -0.062 4.062 8 C 0.174 3.826 9 N -0.631 5.631 10 C 0.118 3.882 11 C 0.028 3.972 12 N -0.543 5.543 13 C 0.020 3.980 14 C 0.027 3.973 15 C 0.697 3.303 16 O -0.595 6.595 17 N -0.727 5.727 18 C 0.267 3.733 19 C -0.538 4.538 20 H 0.063 0.937 21 C 0.063 3.937 22 N -0.886 5.886 23 Si 0.902 3.098 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.139 4.139 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.135 0.865 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.024 0.976 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.023 0.977 46 H 0.388 0.612 47 H 0.023 0.977 48 H 0.024 0.976 49 H 0.264 0.736 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.997 -17.945 12.051 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.070 3.930 4 C -0.226 4.226 5 C -0.102 4.102 6 C -0.142 4.142 7 C -0.064 4.064 8 C 0.050 3.950 9 N -0.369 5.369 10 C -0.007 4.007 11 C -0.101 4.101 12 N -0.267 5.267 13 C -0.128 4.128 14 C -0.122 4.122 15 C 0.399 3.601 16 O -0.474 6.474 17 N -0.380 5.380 18 C 0.146 3.854 19 C -0.577 4.577 20 H 0.081 0.919 21 C -0.140 4.140 22 N -0.524 5.524 23 Si 0.729 3.271 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.158 4.158 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.153 0.847 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.223 0.777 47 H 0.041 0.959 48 H 0.042 0.958 49 H 0.074 0.926 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.631 -17.039 12.073 23.432 hybrid contribution -0.782 -0.531 -0.836 1.262 sum -11.413 -17.570 11.237 23.774 Atomic orbital electron populations 1.23003 0.78686 1.03626 1.01294 1.86043 1.21143 1.27175 1.89129 1.18936 0.92252 0.83988 0.97802 1.21196 0.99704 0.92538 1.09185 1.20987 0.94817 0.96873 0.97558 1.21243 0.93453 0.99124 1.00392 1.20181 0.96771 0.92103 0.97360 1.20145 0.88261 1.03694 0.82922 1.47148 1.71047 1.05020 1.13677 1.21431 0.96819 0.85804 0.96626 1.22791 0.97763 0.91635 0.97938 1.61905 1.40800 1.03417 1.20565 1.22453 1.00347 0.94728 0.95271 1.22356 0.91651 1.01582 0.96582 1.16078 0.78768 0.82945 0.82356 1.90838 1.58653 1.30983 1.66949 1.45890 1.68459 1.12245 1.11422 1.18966 0.96966 0.78989 0.90485 1.21274 1.45586 0.93421 0.97369 0.91905 1.24930 0.95328 0.94844 0.98896 1.69992 1.47767 0.98250 1.36402 0.86387 0.78476 0.78435 0.83785 1.19572 1.20892 1.20857 1.20195 0.91104 0.97899 1.06616 0.92778 0.92779 0.88488 0.85895 0.85835 0.84715 0.88562 0.90173 0.89646 0.90699 0.93374 0.90302 0.95698 0.91540 0.91188 0.91117 0.91458 0.95841 0.77729 0.95851 0.95799 0.92615 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.62 10.50 -19.44 -0.20 -3.83 16 3 C 0.11 1.42 6.69 -39.22 -0.26 1.16 16 4 C -0.21 -2.43 9.04 -39.43 -0.36 -2.79 16 5 C -0.08 -1.07 10.04 -39.60 -0.40 -1.47 16 6 C -0.12 -1.79 9.70 -39.56 -0.38 -2.18 16 7 C -0.06 -0.84 5.39 -104.65 -0.56 -1.41 16 8 C 0.17 2.31 5.57 -5.19 -0.03 2.28 16 9 N -0.63 -9.80 2.46 -180.80 -0.44 -10.24 16 10 C 0.12 1.52 5.14 -4.04 -0.02 1.50 16 11 C 0.03 0.36 5.28 -3.82 -0.02 0.34 16 12 N -0.54 -6.40 5.02 -251.26 -1.26 -7.66 16 13 C 0.02 0.19 9.32 60.06 0.56 0.75 16 14 C 0.03 0.29 9.57 60.07 0.57 0.86 16 15 C 0.70 14.45 8.28 -86.91 -0.72 13.73 16 16 O -0.60 -14.36 15.44 5.29 0.08 -14.27 16 17 N -0.73 -15.98 5.42 -66.41 -0.36 -16.34 16 18 C 0.27 7.23 5.43 -5.19 -0.03 7.20 16 19 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 20 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 23 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 27 C -0.14 -1.73 7.48 -39.44 -0.29 -2.02 16 28 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 29 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.12 1.15 6.30 -52.49 -0.33 0.82 16 32 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.13 2.18 7.57 -52.49 -0.40 1.78 16 34 H 0.10 1.40 7.36 -51.93 -0.38 1.01 16 35 H 0.08 0.82 7.84 -51.93 -0.41 0.41 16 36 H 0.09 1.19 6.36 -51.93 -0.33 0.86 16 37 H 0.07 0.78 6.31 -51.93 -0.33 0.45 16 38 H 0.05 0.64 5.24 -51.93 -0.27 0.36 16 39 H 0.08 1.24 8.06 -51.93 -0.42 0.82 16 40 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 42 H 0.07 0.60 6.47 -51.93 -0.34 0.27 16 43 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 44 H 0.07 0.63 8.12 -51.94 -0.42 0.21 16 45 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.39 7.69 6.05 -40.82 -0.25 7.45 16 47 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 50 H 0.12 1.39 7.73 -52.48 -0.41 0.98 16 LS Contribution 404.08 15.07 6.09 6.09 Total: -1.00 -33.15 404.08 -9.73 -42.88 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.99 Total: 7.18 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -1.37 Total: 5.67 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -1.33 Total: -59.89 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.12 Total: -18.10 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.15 -9.73 -42.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418341.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.653 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds