Wall clock time and date at job start Tue Mar 31 2020 18:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 N 1.46505 * 109.46967 * 270.02099 * 8 7 6 10 10 C 1.46494 * 120.00109 * 269.99636 * 9 8 7 11 11 C 1.53004 * 109.46866 * 90.00119 * 10 9 8 12 12 N 1.46896 * 109.47252 * 179.97438 * 11 10 9 13 13 C 1.46899 * 111.00040 * 66.04690 * 12 11 10 14 14 C 1.46904 * 111.00428 * 190.00293 * 12 11 10 15 15 C 1.34779 * 119.99466 * 90.00339 * 9 8 7 16 16 O 1.21582 * 120.00408 * 359.97438 * 15 9 8 17 17 N 1.34784 * 119.99180 * 179.97438 * 15 9 8 18 18 C 1.46504 * 119.99178 * 180.02562 * 17 15 9 19 19 C 1.50708 * 109.46590 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99895 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99989 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99738 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00078 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47060 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47271 * 120.00555 * 23 21 19 26 26 H 1.48500 * 109.47117 * 240.00468 * 23 21 19 27 27 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 28 28 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 29 29 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 30 30 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 32 32 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 33 33 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 34 34 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 35 35 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 36 36 H 1.08992 * 109.47463 * 210.00204 * 10 9 8 37 37 H 1.08992 * 109.47237 * 330.00773 * 10 9 8 38 38 H 1.09002 * 109.47645 * 300.00294 * 11 10 9 39 39 H 1.09004 * 109.47003 * 60.00285 * 11 10 9 40 40 H 1.09001 * 109.46819 * 60.00231 * 13 12 11 41 41 H 1.08998 * 109.47234 * 179.97438 * 13 12 11 42 42 H 1.08992 * 109.47322 * 300.00122 * 13 12 11 43 43 H 1.09004 * 109.46806 * 59.99605 * 14 12 11 44 44 H 1.08989 * 109.47672 * 179.97438 * 14 12 11 45 45 H 1.09001 * 109.46784 * 300.00631 * 14 12 11 46 46 H 0.96991 * 120.00579 * 359.97438 * 17 15 9 47 47 H 1.08997 * 109.47373 * 299.99266 * 18 17 15 48 48 H 1.08993 * 109.47571 * 59.99747 * 18 17 15 49 49 H 0.97001 * 120.00010 * 179.97438 * 22 21 19 50 50 H 1.08006 * 120.02917 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 7 6.0473 2.6245 -1.3826 10 6 6.3590 1.3708 -2.0734 11 6 5.1091 0.8611 -2.7937 12 7 5.4216 -0.3957 -3.4869 13 6 5.7315 -1.4635 -2.5268 14 6 4.3238 -0.7921 -4.3790 15 6 6.2084 3.8022 -2.0180 16 8 5.9494 4.8427 -1.4448 17 7 6.6566 3.8263 -3.2889 18 6 6.8321 5.1064 -3.9794 19 6 7.3402 4.8580 -5.3763 20 1 7.5151 3.8477 -5.7156 21 6 7.5816 5.9205 -6.2212 22 7 7.3689 7.1508 -5.8078 23 14 8.2106 5.6127 -7.9529 24 1 8.3658 4.1519 -8.1708 25 1 7.2411 6.1591 -8.9362 26 1 9.5244 6.2822 -8.1287 27 6 3.4311 1.2849 -0.0001 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2128 2.3203 -0.0106 32 1 1.3339 4.5114 0.0011 33 1 3.7922 4.6381 0.0002 34 1 5.8760 3.5065 0.5126 35 1 5.9718 1.7291 0.5125 36 1 7.1521 1.5441 -2.8006 37 1 6.6880 0.6278 -1.3470 38 1 4.3158 0.6878 -2.0665 39 1 4.7800 1.6042 -3.5202 40 1 4.8725 -1.6275 -1.8762 41 1 5.9587 -2.3828 -3.0666 42 1 6.5926 -1.1726 -1.9253 43 1 4.1617 -0.0131 -5.1239 44 1 4.5815 -1.7252 -4.8798 45 1 3.4139 -0.9318 -3.7953 46 1 6.8635 2.9963 -3.7461 47 1 5.8760 5.6275 -4.0275 48 1 7.5518 5.7174 -3.4347 49 1 7.5391 7.8984 -6.4020 50 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426418341.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:40 Heat of formation + Delta-G solvation = -48.859973 kcal Electronic energy + Delta-G solvation = -30112.138398 eV Core-core repulsion = 26139.399031 eV Total energy + Delta-G solvation = -3972.739367 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.54227 -40.81404 -38.75052 -38.40009 -36.43087 -36.06589 -34.36881 -32.68089 -31.51483 -30.25876 -29.33222 -28.42423 -28.20819 -26.81099 -25.35248 -24.33285 -23.56098 -22.33751 -22.08726 -20.85144 -19.51061 -18.83745 -18.03208 -17.50058 -17.19117 -16.93075 -16.77050 -16.67161 -16.54902 -16.12502 -16.05289 -15.57170 -15.23380 -14.96581 -14.86632 -14.54995 -14.40428 -14.28122 -13.94669 -13.87368 -13.55098 -13.30656 -13.04557 -12.96656 -12.84641 -12.79113 -12.73637 -12.56853 -12.47052 -12.46801 -12.20251 -12.01560 -11.90106 -11.78073 -11.42442 -11.10443 -10.79185 -10.06116 -9.89510 -9.48949 -9.25581 -9.14959 -8.26887 -6.42615 0.22581 0.44915 1.43612 1.44889 1.58488 1.80641 2.24260 2.34907 2.39398 2.79494 2.97890 3.07991 3.38291 3.77180 3.81243 3.90732 4.06470 4.07248 4.22240 4.30972 4.31141 4.37119 4.39115 4.46976 4.49653 4.54046 4.62189 4.66667 4.71814 4.72462 4.75229 4.84073 4.98033 5.01955 5.03609 5.09164 5.12874 5.26456 5.30103 5.44427 5.48443 5.56790 5.67342 5.71427 5.75995 5.87821 5.99867 6.08330 6.18663 6.42213 6.68982 7.20658 7.27353 7.73684 8.85602 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011440 B = 0.003368 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.041598 B = 8310.834131 C = 9377.305573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.113 3.887 4 C -0.206 4.206 5 C -0.091 4.091 6 C -0.151 4.151 7 C -0.068 4.068 8 C 0.171 3.829 9 N -0.617 5.617 10 C 0.116 3.884 11 C 0.040 3.960 12 N -0.553 5.553 13 C 0.019 3.981 14 C 0.027 3.973 15 C 0.694 3.306 16 O -0.636 6.636 17 N -0.724 5.724 18 C 0.289 3.711 19 C -0.551 4.551 20 H 0.078 0.922 21 C 0.006 3.994 22 N -0.930 5.930 23 Si 0.983 3.017 24 H -0.255 1.255 25 H -0.278 1.278 26 H -0.277 1.277 27 C -0.138 4.138 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.120 0.880 31 H 0.149 0.851 32 H 0.136 0.864 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.050 0.950 39 H 0.045 0.955 40 H 0.029 0.971 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.085 0.915 45 H 0.024 0.976 46 H 0.401 0.599 47 H -0.017 1.017 48 H -0.014 1.014 49 H 0.268 0.732 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.332 -21.671 11.676 27.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.068 3.932 4 C -0.224 4.224 5 C -0.109 4.109 6 C -0.170 4.170 7 C -0.070 4.070 8 C 0.048 3.952 9 N -0.353 5.353 10 C -0.007 4.007 11 C -0.089 4.089 12 N -0.278 5.278 13 C -0.129 4.129 14 C -0.121 4.121 15 C 0.396 3.604 16 O -0.518 6.518 17 N -0.379 5.379 18 C 0.166 3.834 19 C -0.589 4.589 20 H 0.096 0.904 21 C -0.194 4.194 22 N -0.568 5.568 23 Si 0.806 3.194 24 H -0.178 1.178 25 H -0.204 1.204 26 H -0.203 1.203 27 C -0.157 4.157 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.167 0.833 32 H 0.153 0.847 33 H 0.123 0.877 34 H 0.096 0.904 35 H 0.141 0.859 36 H 0.096 0.904 37 H 0.132 0.868 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.103 0.897 45 H 0.043 0.957 46 H 0.237 0.763 47 H 0.001 0.999 48 H 0.004 0.996 49 H 0.077 0.923 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.981 -20.853 11.731 26.326 hybrid contribution -0.798 0.553 -0.626 1.155 sum -11.779 -20.300 11.105 25.964 Atomic orbital electron populations 1.23318 0.76640 1.05534 1.02059 1.86035 1.23260 1.26379 1.88796 1.19091 0.92481 0.84670 0.96982 1.21456 1.01079 0.91804 1.08103 1.21163 0.94212 0.98177 0.97385 1.21188 0.94619 0.98492 1.02744 1.20117 0.96578 0.92305 0.97993 1.20377 0.88644 1.04751 0.81427 1.47085 1.69704 1.04186 1.14303 1.21642 0.96620 0.85043 0.97370 1.22556 0.97550 0.91793 0.97030 1.61908 1.41076 1.03557 1.21235 1.22541 1.00870 0.94341 0.95101 1.22367 0.91617 1.01861 0.96274 1.16251 0.78271 0.84068 0.81847 1.90812 1.60057 1.33194 1.67702 1.45507 1.69296 1.10964 1.12096 1.18361 0.93685 0.80436 0.90960 1.21590 1.45619 0.94325 0.97409 0.90351 1.26018 0.95159 0.94329 1.03867 1.70148 1.48755 0.99519 1.38421 0.85141 0.77732 0.79159 0.77380 1.17815 1.20408 1.20262 1.20306 0.91600 0.97749 1.06040 0.91615 0.92355 0.86158 0.83340 0.84658 0.87667 0.90436 0.85868 0.90444 0.86842 0.93223 0.93652 0.95264 0.90263 0.90105 0.92569 0.89659 0.95700 0.76279 0.99931 0.99580 0.92274 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.54 10.50 -92.48 -0.97 -7.51 16 3 C 0.11 2.57 6.69 22.50 0.15 2.72 16 4 C -0.21 -4.54 9.04 22.37 0.20 -4.34 16 5 C -0.09 -2.35 10.04 22.26 0.22 -2.13 16 6 C -0.15 -4.63 9.70 22.28 0.22 -4.41 16 7 C -0.07 -1.84 5.39 -19.88 -0.11 -1.94 16 8 C 0.17 4.46 5.57 85.63 0.48 4.94 16 9 N -0.62 -19.11 2.46 -844.20 -2.07 -21.18 16 10 C 0.12 2.81 5.14 86.38 0.44 3.25 16 11 C 0.04 1.00 5.28 86.31 0.46 1.45 16 12 N -0.55 -11.81 5.02 -948.85 -4.76 -16.58 16 13 C 0.02 0.29 9.32 127.69 1.19 1.48 16 14 C 0.03 0.54 9.57 127.69 1.22 1.76 16 15 C 0.69 30.10 8.28 179.05 1.48 31.58 16 16 O -0.64 -32.82 15.44 -3.97 -0.06 -32.88 16 17 N -0.72 -33.22 5.42 -482.28 -2.61 -35.83 16 18 C 0.29 16.56 5.43 85.63 0.46 17.03 16 19 C -0.55 -31.11 9.28 25.60 0.24 -30.87 16 20 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 21 C 0.01 0.33 5.46 84.65 0.46 0.79 16 22 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 23 Si 0.98 43.43 29.54 68.60 2.03 45.45 16 24 H -0.25 -10.49 7.11 99.48 0.71 -9.79 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 27 C -0.14 -3.18 7.48 22.36 0.17 -3.02 16 28 H 0.07 0.63 7.67 -2.39 -0.02 0.61 16 29 H 0.06 0.65 7.65 -2.39 -0.02 0.63 16 30 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.15 2.42 6.30 -2.91 -0.02 2.40 16 32 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 33 H 0.11 3.79 7.57 -2.91 -0.02 3.76 16 34 H 0.08 2.34 7.36 -2.39 -0.02 2.32 16 35 H 0.12 2.15 7.84 -2.39 -0.02 2.13 16 36 H 0.08 2.04 6.36 -2.39 -0.02 2.03 16 37 H 0.11 1.93 6.31 -2.39 -0.02 1.91 16 38 H 0.05 1.22 5.24 -2.39 -0.01 1.21 16 39 H 0.04 1.43 8.06 -2.38 -0.02 1.41 16 40 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.08 1.03 8.12 -2.39 -0.02 1.01 16 42 H 0.08 1.05 6.47 -2.39 -0.02 1.04 16 43 H 0.06 1.26 8.12 -2.38 -0.02 1.25 16 44 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 45 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.40 16.18 6.05 -92.71 -0.56 15.61 16 47 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 48 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 49 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 50 H 0.14 2.71 7.73 -2.91 -0.02 2.69 16 Total: -1.00 -76.05 404.08 0.61 -75.44 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.38 Total: 30.27 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 8.40 Total: 19.63 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -9.16 Total: -130.40 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -1.03 Total: -40.40 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -76.05 0.61 -75.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418341.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.577 kcal (2) G-P(sol) polarization free energy of solvation -76.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds